Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000449.1:561373-568136[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.037 3.3 8.9 0.5 1 21 175 195 175 196 0.95

2 14 1.2 1.1e+02 4.1 4.1 2 23 217 238 216 239 0.93

3 14 0.33 29 5.9 2.2 1 19 276 294 276 296 0.94

4 14 0.017 1.5 10.0 1.8 3 23 334 354 332 354 0.97

5 14 0.29 25 6.1 0.4 2 23 801 823 800 823 0.94

6 14 0.0016 0.14 13.2 0.9 2 23 826 847 825 847 0.96

7 14 0.41 36 5.6 0.4 1 23 866 887 866 887 0.91

8 14 0.0015 0.13 13.3 0.5 2 23 930 951 929 951 0.95

9 14 3.8 3.4e+02 2.5 1.2 2 23 968 989 967 989 0.94

10 14 5.7e-07 5e-05 24.0 3.2 1 23 995 1017 995 1017 0.99

11 14 0.39 34 5.7 0.1 1 23 1022 1044 1022 1044 0.95

12 14 0.001 0.087 13.8 1.9 3 23 1051 1072 1049 1072 0.95

13 14 0.045 3.9 8.6 0.3 1 20 1077 1096 1077 1097 0.94

14 14 0.00024 0.021 15.8 0.5 3 23 1109 1130 1108 1130 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.037	3.3	8.9	0.5	1	21	175	195	175	196	0.95
2	14	1.2	1.1e+02	4.1	4.1	2	23	217	238	216	239	0.93
3	14	0.33	29	5.9	2.2	1	19	276	294	276	296	0.94
4	14	0.017	1.5	10.0	1.8	3	23	334	354	332	354	0.97
5	14	0.29	25	6.1	0.4	2	23	801	823	800	823	0.94
6	14	0.0016	0.14	13.2	0.9	2	23	826	847	825	847	0.96
7	14	0.41	36	5.6	0.4	1	23	866	887	866	887	0.91
8	14	0.0015	0.13	13.3	0.5	2	23	930	951	929	951	0.95
9	14	3.8	3.4e+02	2.5	1.2	2	23	968	989	967	989	0.94
10	14	5.7e-07	5e-05	24.0	3.2	1	23	995	1017	995	1017	0.99
11	14	0.39	34	5.7	0.1	1	23	1022	1044	1022	1044	0.95
12	14	0.001	0.087	13.8	1.9	3	23	1051	1072	1049	1072	0.95
13	14	0.045	3.9	8.6	0.3	1	20	1077	1096	1077	1097	0.94
14	14	0.00024	0.021	15.8	0.5	3	23	1109	1130	1108	1130	0.95

Sequence Information

Coding Sequence: ATGTTTGAACACCAGTTCTACTTGAGGATATTGCAGCCGTCCACCAAAGGGTCACATATCCGCAGGGTGAAGGAGTACGTATTCACGAAGAGCAGCTTACGCAAAGGTCTGGAGGCGCAAGCCAAGCTGAACACCAGCGCCGTCGACAGGTACATCCAGATCAAGCTGAACAACGTCCACTGCGAGATCCTGACACCAGCTAGATCGCGACAGGAGGAGCTCATACAGAAATGTCTGCAGGAGTGGCTGAGCTGGTACGAGTCCTGGGCCGAGGTCAGGGAGACGCCGCTGCTTTACAAATGTTACCTGTGCAGCAAGGGCTGGTGGAGACTCCATCCGTTCAGAGAGCACATCAAGGAGCACGACGAGCCCCACCTCGAGGTCAGAGCGGAACAGTCCTCGTACCAGTTCAACGTGGTCGCTTCCGTCGACAAGAGTGACCTGATGAAGGTCGTCGACGTGGACGGCGTCTGCCACAGGTGCGACGAACCGATGAAGTACCACGCCCGTAAGAACCCCAGTTACCGctgcgcgggctgcaagctaggGGTCACCAGCTGCTCCAAGCTGAGGTCCCATCAGGCAATGTGCGTCAAGTACATCGAACTGAAGTTCAAGAAGCAGATCCAGTCGTCCAGGGCTGTGATGGTGTGCTACCTGTGCGGCGCCCACTGCGTCACGGAGCAACACCTGCTGGAGCACCTCGTCAGCCACCACTCGCCCAGGAGTGACGAGCTGACAGCGATACAGTACGCGCAGTGCAAGTACTGCAGCATGAACTTCGTCAGCGACACCTACCACGACTGCCCGAAGAAGTGCAAGTATTACAAGTGTTCGCACTGCTGCAGGAAGTTCACGTCGCCAGCGCTCCTCGACCTGCACAACGCGGTGTCCAGCAGGCGCACGGTCAAGTGCGACGTGTGCGCGCACTCGATGAAGGAGTGCATGATGCTTGAGCACATGCTCAGCCACACGAGGAACTACGGCGCGGTGTACTGGTGCCGGAAGTGCGACTACCTGTTCACCAAGTACCAGATGCTGCTGAACCACATGAGGTTTCACAACAAATATACGCAGAAGCGGAGGTTCACGTACAAGATGCTGCTCCCGACGAGATGCATCAACGGCGAATTCGCAGCATCCATGCGGACCATAGACATCCCGCAATCCAGCGTCATGGACTTCCTGTTGGGCGAACATTTGGAGTTTGGCAAACTTAAGTCCTATCATCCAATCGATAGTTCCAGCAGCGTTGGGGACATAGATAAAGTGCCGGATATCCTCATCGTGAACGATGGCGCCAAGCGTGCGACGGCATCAGCGGCCGCCGCGACGTCCGACGACCCGGATCACCTGGCGCTGCAGTTGGACGCGGAGATACAGCAGGACCTCGAAATGGAGGAGGCGATATCGAAAGTCTTCAAGGCGTCCAATTGCTACAAGAAATTCATGGAGAAGGAGTTAGCTGAACCAACACAAGAATATCTCTATGATGATGACCTCATTATTCTAGAAAACCAGGACGATATCCTGATAGTCATAGATTCAGATACAGACGATAGGAACGGAGATGAGGATGAtgacggtagaaataaaaaGGGCGGTGCCAATGACAAAGACTCCACCGAGGCTGTTGAACCTGATCATGATCGTATAGATGAAACGAATTTAGATCGAAATGTCGTGAAGGAGGAATATGCTGATACACATTTTGAAGGATATGAATATTTAGAGGATCTAGAGAGTGTGACGGTCGATGGTGAAGAGTATGAGACGAATTATGGTATCAATGTTGACATCAAATACGAACCGGTGAGCTCTTATGTTGAAGAAGTGTTCGAAGCTGATGCTGCAGCTGATAAGAGTCAATCTGCTGACGGCAGCACCGGCGAAGTGAAAGCAGCGGACTTGAATCCCGATGCTGACATTAATAGGGTATCTGCGAAAAAGCGCGCGAAACCTTCCAGGGCTAACACAGATCTTAAGGTGAAGAAAGCTAAAGTGAAGGAATACGTTCGCTTCAAAGCGGAAACCGGATGTAGCTATGGTGGTGACAAGGCCAGCTCGGGCTTCAACCCTGAACAAGGATACTCCAGCATTTCCGATGGTAACAATATGGGCGTGAAGGAGGAATTCGACGATCAGACGGAACATTTGGAAACAGAGGAACTCGATATCGAGGTGGGGTGGGTCATGCATCTGCAGGAAGAAACCAGCGACAGTGTTGCCATTGAGAGCGAAAAGCAATCAATTCAAGATGGCGGCGGGAAGCCGCAGAAACGCGCGAAAGCAGCCACCAGCAAGAATTCGAACTTCTTGACGTGCGCCAAATGCGCGTTCACCGGCAAATACAGAAGGTACACCGAGCACGTGATCAGCGGCTGCTCGAACAACTCCTGGAGCTGCACACGCTGCGCGAAGAAGTACAATAGCCTCATCCTGTACGTCAAGCATCTGAAGGAAGAGCACGGCTCCTCGTGCCCCGAATGCCGCGAGGTGATCAAGGTGCCGAGCCACCTGCACCGGCATATCTCGATCCACGTGCGGAGCCTGTTCCTGAACGACAGCAGGTACCTGACGGACCTGTCGTGGGCGTACGAGTGCCGGAAGTGCGGCAAGGTGCAGAGCTTGGACGATCTGTTCACCCACTGGGAGTCCCACCTGAGCGTGGTCGAGGAAGCGGCGCCCGACGACAAACCGGACATGAATCCGTTGAGCCCGGAAATGGTGCGATGTGTTATAGAGAGGTTGTTCCTGAAAACGAAGCAGAACAAGGGTGAGCTGGTCCGGTGCGTGGTGTGCCCGAAGAGGTTCGACCGGAAGAACGACACGAAGCGGCACCTGATAGAGCACCTCCTCAGCAAGGCGCTCTGCGACAAAGTGGCCACGAACAACTGCCTCCGCTGCCAGATCTGCAGCAGCGACCTGCACGACGTGTACACCTGGAAGCAGCACATGCGCGACCACGCCGACCTGCCGGAGTACCAGTGCAAGACCTGCAAGAAGCGCTTCAGCGACTCCAGCAACCTCGCGAAGCACAAGAAGGTGCACAACTTCTACTCGTACGTGTGCGACCTGTGCGGCAGCAAGTTCCAAGCGGAGGCCAGCATCGTCAAGCACCTGATGCTCCATGAACAGCCGCCGGTCCACTGCAAGGTGTGCAAGGCGACGTTCTACTCCCCGTCGCGGCTGAACGTCCACATGAAGCAGCGCCACCAGCTCAGCACGTTCCCCTGCATGATATGCAAGAAGCGCTTCAACAGCCTGAAGGACAAGTGGGACCACATGTGGGAGGAGCACAAGCAGCGCAGCGTGGAGGCCGACTGCCCTATATGCGCCAAGTCGTTCCGCAAGAGGAGCGACGTCAAGACCCACCTGAAGGAGGATCACGGCATGCCCACGCGTGGGCTACCGAGCGAAGGCCACATCGAGAAGAACGAAAAGGATACTTCAAATTAA
Protein Sequence: MFEHQFYLRILQPSTKGSHIRRVKEYVFTKSSLRKGLEAQAKLNTSAVDRYIQIKLNNVHCEILTPARSRQEELIQKCLQEWLSWYESWAEVRETPLLYKCYLCSKGWWRLHPFREHIKEHDEPHLEVRAEQSSYQFNVVASVDKSDLMKVVDVDGVCHRCDEPMKYHARKNPSYRCAGCKLGVTSCSKLRSHQAMCVKYIELKFKKQIQSSRAVMVCYLCGAHCVTEQHLLEHLVSHHSPRSDELTAIQYAQCKYCSMNFVSDTYHDCPKKCKYYKCSHCCRKFTSPALLDLHNAVSSRRTVKCDVCAHSMKECMMLEHMLSHTRNYGAVYWCRKCDYLFTKYQMLLNHMRFHNKYTQKRRFTYKMLLPTRCINGEFAASMRTIDIPQSSVMDFLLGEHLEFGKLKSYHPIDSSSSVGDIDKVPDILIVNDGAKRATASAAAATSDDPDHLALQLDAEIQQDLEMEEAISKVFKASNCYKKFMEKELAEPTQEYLYDDDLIILENQDDILIVIDSDTDDRNGDEDDDGRNKKGGANDKDSTEAVEPDHDRIDETNLDRNVVKEEYADTHFEGYEYLEDLESVTVDGEEYETNYGINVDIKYEPVSSYVEEVFEADAAADKSQSADGSTGEVKAADLNPDADINRVSAKKRAKPSRANTDLKVKKAKVKEYVRFKAETGCSYGGDKASSGFNPEQGYSSISDGNNMGVKEEFDDQTEHLETEELDIEVGWVMHLQEETSDSVAIESEKQSIQDGGGKPQKRAKAATSKNSNFLTCAKCAFTGKYRRYTEHVISGCSNNSWSCTRCAKKYNSLILYVKHLKEEHGSSCPECREVIKVPSHLHRHISIHVRSLFLNDSRYLTDLSWAYECRKCGKVQSLDDLFTHWESHLSVVEEAAPDDKPDMNPLSPEMVRCVIERLFLKTKQNKGELVRCVVCPKRFDRKNDTKRHLIEHLLSKALCDKVATNNCLRCQICSSDLHDVYTWKQHMRDHADLPEYQCKTCKKRFSDSSNLAKHKKVHNFYSYVCDLCGSKFQAEASIVKHLMLHEQPPVHCKVCKATFYSPSRLNVHMKQRHQLSTFPCMICKKRFNSLKDKWDHMWEEHKQRSVEADCPICAKSFRKRSDVKTHLKEDHGMPTRGLPSEGHIEKNEKDTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01494681;
90% Identity: iTF_01494681;
80% Identity: -