Taea024037.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067296.1:3360935-3371950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.04 3.8 8.8 0.6 1 21 285 305 285 306 0.95 2 15 0.39 37 5.7 3.0 2 23 327 348 326 349 0.93 3 15 1.6 1.5e+02 3.7 0.3 2 11 363 372 363 375 0.88 4 15 0.19 18 6.7 2.4 1 19 386 404 386 406 0.94 5 15 0.019 1.8 9.8 1.8 3 23 444 464 442 464 0.97 6 15 2 1.9e+02 3.4 0.3 2 23 911 933 910 933 0.93 7 15 0.0018 0.17 13.0 0.9 2 23 936 957 935 957 0.96 8 15 0.47 45 5.4 0.4 1 23 976 997 976 997 0.91 9 15 0.0017 0.16 13.1 0.5 2 23 1040 1061 1039 1061 0.95 10 15 4.4 4.2e+02 2.4 1.2 2 23 1078 1099 1077 1099 0.94 11 15 6.5e-07 6.2e-05 23.8 3.2 1 23 1105 1127 1105 1127 0.99 12 15 0.44 43 5.5 0.1 1 23 1132 1154 1132 1154 0.95 13 15 0.0088 0.84 10.8 2.7 3 23 1161 1182 1159 1182 0.95 14 15 0.051 4.9 8.4 0.3 1 20 1187 1206 1187 1207 0.94 15 15 0.00027 0.026 15.6 0.5 3 23 1219 1240 1218 1240 0.95
Sequence Information
- Coding Sequence
- atgaatgAGAACTCCAAACGTAAATCTCGGAAGTCCAAGCTAGAGCTGCGCGAATGCTCCGATGACGAGGATGAAAACATCATCGCACTACAGGCCGGCATAGAGAAGCTGGTAAATCTCAAGAAGCAATTACTGAACAGGGGCGAGGATGATGTGGCTGAAGGAACCGCTCCAGCTGACCCGATCAACTTCCAAGTGCAAGTCAAAGTGGAGAAGTgcgtcgatgatgatgatgaacaaaatgTTACCGTTGTCGCTGACGATTCAGCGGCCGgcggtggtggtgatggtgaagTGGAATGCGAATACAGTTCTACAAGTGTTGATAAAATGTTTGAACACCAGTTCTACTTGAGGATATTGCAGCCGTCCACCAAAGGGACACTTATCCGCAGGGTCAAGGAGTACGTATTCACGAAGAGCAGCTTACGCAAAGGTCTGGAGGCGCAAGCCAAGCTGAACACCAGCGCCGTCGACAGGTACATCCAGATCAAGCTGAACAACGTCCACTGCGAGATCCTGACACCAGCTAGATCGCGACACGAGGAGCTCATACAGAAATGTCTGCAGGACTGGCTGAGCTGGTACGAGTCCTGGCCCGAGGTCAGGGAGACGCCGCTGCTTTACAAATGTTACCTGTGCAGCAAGGGCTGGTGGAGACTCCATCCGTTCAGAGAGCACATCAAGGAGCACGACGAGCCCCGCCTCGAGGTCAGAGCGGAACAGTCCTCGCACCAGTTCAATGTGGTCGCTTCCGTCGACAAGAGTGACCTGATGAAGGTCGTCGGCGTGGACGGCGTCTGCCACAGGTGCGACGAACCGATGAAGTACCACGTCCGTAAGAACCCCAGTTACCGCTGCGCGGGCTGCAAGCTGGAGGTCACCAGCTGCTCCAAGCTGAGGTCCCATCAGGCAATGTGCGTCAAGTACACCGAACTGAAGTTCAAGAAGCAGATCCAGTCGTCCAGGGCTGTGATGGTGTGCTACCTGTGCGGCACCCACTGCGTCACGGAGCAACAACTGCTGGAGCACCTCGTCAGCCACCACTCGCCCAGGAGTGACGAGCCGACAGCGATACAGTACGCGCAGTGCAAGTACTGCGGCATGAACTTCGTCAGCGACACCTACCACGACTGCCCGAAGAAGTGCAAGTATTACAAGTGCTCGCACTGCTGCAAGAAGTTCACGTCGCCGGCGCTCCTCGACCTGCACAACGCGGTGTCCAGCAGGCGCACGGTCAAGTGCGACGTGTGCGCGCACTCGATGAAGGAGTGCATGATGCTGGAGCACATGCTCAGCCACACGAGGAACTACGGCGCGGTGTACTGGTGCCGGAAGTGCGACTACCTGTTCACCAAGTACCAGATGCTGCTGAACCACATGAGGTTTCATAACAAATATACGCAGAAGCGGAGGTTCACGTACAAGATGCTGCTCCCGACGAGATGCATCAACGGCGAATTCGCAGCATCCATGCGGACCATAGACATGCCGCAATCCAGCGTCATGGACTTCCTGTTGGGCGAACATTTGGAGTTTAGCAAACTTAAGTCCTATCATCCAAACGATAGCTCCAGCAGCGTTGGGGACATAGATAAAGTGCCGGATATCCGCATCGTGAACGATGGTGCCAAGCGTGCGACGGCATCGGCGGCCGCCGCGACGTCCGACGACCCGGATCACCTGGCGCTGCAGTTGGACGCGGAGATACAGCAGGACCTCGAAATGGAGGAGGCGATATCGAAAGTCTTCAAGTCGTCCAATTGCTACAAGAAATTCATGGAGAAGGAGTTAGCTGAACCAACAGAAGAATATCTCTATGATGATGACCTCATTATTCTAGAAAACCAGGACGATATCCTGATAGTCATAGATTCAGATACAGACGATAGGAACGGAGATGAGGATGCTGCGGATGAtgacggtagaaataaaaaGGGCGGTGCCAATGACAAAGACTCCACCGAGGCTGTTGAACCTGATCATGATCGTATAGATGAAACGAATTTGGATCGAAATGTCGTGAAGGAGGAATATGCTGATACAAATTTTGAAGGATATGAATATTTAGAGGATCTAGAGAGTGTGACGGTCGATGGTGAAGAGTATGAGACGAATTATGGTATCAATGTTGACATCAAATACGAACCGGTGAGCTCTTATGTTGAAGAAGTGTTCGAAGCTGATGCTGCAGCTAATAAGAGCCAATCTGCTGACGGCAGCACCGGCGGAGTGAAAGCAGCGGACTTGAATCCCGATGCTGACATTAGGGTATCTGCGAAAAAGCGCGCGAAACCGGCCAGGGCTAACACAGATCTTAAGGTGAAGAAAGCTAAAGTGAAGCAATACGTTCGCGTCAAAGCGGAAACCGGATGTAGCTATGGTGGTGGCAAGGCCAGCTCGGGCTTCAACCCTGAACAAGGATACTCCAGCATTTCCGATGGTAACAATATGGGTGTGAAGGAGGAATTCGAGGATCAGACGGAACATTTGGAAACAGAGGAACTTGATATCGACGTGGGGTGGGTCATGCATGTGCAGGAAGAAACCAGCGACAGTGTTGCCATTGAGAGCGAAAAGCAATCAATTCAAGATGGCGGCGGGAAGCCGCAGAGACGCGCGAGAGCAGCCAGCAAGAGCAACTTCTTGACGTGCGCCAAGTGCGCGTTCACCGGCAAATACAGAAGGTACACCGAGCACGTGATCAGCGCCTGCTCGACTAGCTCCTGGAGCTGCACACGCTGCGCGAAGAAGTACAATGGCCTCATCTTGTACGTCAAGCATCTGAAGGAAGAGCACGGCTCCTCGTGCCCCGAATGCCGCGAGGTGATCAAGGTGCCGAGCCACCTGCACCGGCACATCTCGATCCACGTGCGGAGCCTGTTCCTGAACGACAGCAGGTACCTGACGGACCTGTCGTGGGCGTACGAGTGCCGGAAGTGCGGCAAGGTGCAGAGCTTGGACGATCTGTTCACCCACTGGGAGTCCCACCTGAGCGTGGTCGAGGAAGCGGCGCCCGACGACAAACCGGACATGAATCCGTTGAGCCCGGAAATGGTGCGACGTGTTATAGAGAGGTTGTTCCTGAAAACGAAGCAGAACAAGGGTGAGCTGGTCCGGTGCGTGGTGTGCCCGAAGAGGTTCGACCGGAAGAACGACACGAAGCGGCACCTGATAGAGCACCTCCTCAGCAAGGCGCTCTGCGACAAAGTGACCACGAACAACTGCCTCCGCTGCCAGATCTGCAGCAGCGACCTGCACGACGTGTACACCTGGAAGCAGCACATGCGCGACCACGCCGACCTGCCGGAGTACCAGTGCAAGACCTGCAAGAAGCGCTTCAGCGACTCCAGCAACCTCGCGAAGCACAAGAAGGTGCACAACTTCTACTCGTACGTGTGCGACCTGTGCGGCAGCAAGTTCCAAGCGGAGGCCAGCATCGTCAAGCACCTGATGCTCCATGAACAGCCGCCGGTCCACTGCAAGGTGTGCAAGGCGACGTTCTACTCCACGTCGCGGCTGAACGTCCACATGAAGCAGCGCCACCAGCTCAGCACGTTCCCCTGCATGATATGCAAGAAGCGCTTCAACAGCCTGAAGGACAAGTGGGACCACATGTGGGAGGAGCACAAGCAGCGCAGCGTGGAGGCCGACTGCCCCATATGCGCCAAGTCGTTCCGCAAGAGGAGCGACGTCAAGACCCACCTGAAGGAGGATCACGGCGTGGCGGGGAATAACCTAAATCTCTCCCATATAGCAGCCCCTAATGCTCAGACGCAATGCTCTGTATGCAAACCTTTGGGGGACTCCCCTGAACTGATGACTGATGAAGCGTCATCATATCTGTTAAAGCCCACCGCTGGACAGTCCTCCAAAAATCGTGGGCATCAGTCAGCTGTTCCATCATTAGCTTGA
- Protein Sequence
- MNENSKRKSRKSKLELRECSDDEDENIIALQAGIEKLVNLKKQLLNRGEDDVAEGTAPADPINFQVQVKVEKCVDDDDEQNVTVVADDSAAGGGGDGEVECEYSSTSVDKMFEHQFYLRILQPSTKGTLIRRVKEYVFTKSSLRKGLEAQAKLNTSAVDRYIQIKLNNVHCEILTPARSRHEELIQKCLQDWLSWYESWPEVRETPLLYKCYLCSKGWWRLHPFREHIKEHDEPRLEVRAEQSSHQFNVVASVDKSDLMKVVGVDGVCHRCDEPMKYHVRKNPSYRCAGCKLEVTSCSKLRSHQAMCVKYTELKFKKQIQSSRAVMVCYLCGTHCVTEQQLLEHLVSHHSPRSDEPTAIQYAQCKYCGMNFVSDTYHDCPKKCKYYKCSHCCKKFTSPALLDLHNAVSSRRTVKCDVCAHSMKECMMLEHMLSHTRNYGAVYWCRKCDYLFTKYQMLLNHMRFHNKYTQKRRFTYKMLLPTRCINGEFAASMRTIDMPQSSVMDFLLGEHLEFSKLKSYHPNDSSSSVGDIDKVPDIRIVNDGAKRATASAAAATSDDPDHLALQLDAEIQQDLEMEEAISKVFKSSNCYKKFMEKELAEPTEEYLYDDDLIILENQDDILIVIDSDTDDRNGDEDAADDDGRNKKGGANDKDSTEAVEPDHDRIDETNLDRNVVKEEYADTNFEGYEYLEDLESVTVDGEEYETNYGINVDIKYEPVSSYVEEVFEADAAANKSQSADGSTGGVKAADLNPDADIRVSAKKRAKPARANTDLKVKKAKVKQYVRVKAETGCSYGGGKASSGFNPEQGYSSISDGNNMGVKEEFEDQTEHLETEELDIDVGWVMHVQEETSDSVAIESEKQSIQDGGGKPQRRARAASKSNFLTCAKCAFTGKYRRYTEHVISACSTSSWSCTRCAKKYNGLILYVKHLKEEHGSSCPECREVIKVPSHLHRHISIHVRSLFLNDSRYLTDLSWAYECRKCGKVQSLDDLFTHWESHLSVVEEAAPDDKPDMNPLSPEMVRRVIERLFLKTKQNKGELVRCVVCPKRFDRKNDTKRHLIEHLLSKALCDKVTTNNCLRCQICSSDLHDVYTWKQHMRDHADLPEYQCKTCKKRFSDSSNLAKHKKVHNFYSYVCDLCGSKFQAEASIVKHLMLHEQPPVHCKVCKATFYSTSRLNVHMKQRHQLSTFPCMICKKRFNSLKDKWDHMWEEHKQRSVEADCPICAKSFRKRSDVKTHLKEDHGVAGNNLNLSHIAAPNAQTQCSVCKPLGDSPELMTDEASSYLLKPTAGQSSKNRGHQSAVPSLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496119;
- 90% Identity
- iTF_01496119;
- 80% Identity
- -