Tobl023481.2
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000456.1:503945-507641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0036 0.32 12.1 0.1 1 23 96 119 96 119 0.91 2 21 0.0014 0.12 13.4 2.6 1 23 190 212 190 212 0.98 3 21 0.00011 0.0098 16.8 0.5 1 23 216 238 216 238 0.97 4 21 0.0063 0.55 11.3 0.8 1 23 272 295 272 295 0.91 5 21 0.057 5 8.3 1.9 1 23 302 325 302 325 0.93 6 21 0.56 49 5.2 0.0 1 15 332 346 332 349 0.89 7 21 0.036 3.2 8.9 0.1 1 20 392 411 392 414 0.86 8 21 0.047 4.1 8.6 0.1 2 23 440 462 439 462 0.92 9 21 0.044 3.8 8.7 1.1 1 23 484 506 484 506 0.98 10 21 0.0093 0.81 10.8 4.1 1 21 510 530 510 532 0.94 11 21 0.14 12 7.1 0.1 1 23 537 560 537 560 0.95 12 21 0.034 3 9.0 3.0 1 23 566 589 566 589 0.96 13 21 0.017 1.5 9.9 0.1 1 23 647 669 647 669 0.95 14 21 0.016 1.4 10.1 5.7 1 23 737 759 737 759 0.98 15 21 5.2e-06 0.00045 21.0 2.5 2 23 764 785 764 785 0.97 16 21 0.63 55 5.0 4.4 1 21 792 812 792 815 0.95 17 21 0.0085 0.74 10.9 3.0 1 23 821 844 821 844 0.98 18 21 0.0089 0.78 10.8 3.0 1 23 850 873 850 873 0.97 19 21 6.9e-05 0.0061 17.5 1.6 1 23 879 901 879 901 0.98 20 21 0.0011 0.093 13.8 3.5 1 23 907 929 907 929 0.99 21 21 0.2 17 6.6 8.1 1 23 935 958 935 958 0.96
Sequence Information
- Coding Sequence
- ATGCGCATACACATGAAGGATGGGAATGTTCCTTTTAGATTTAGTAACACAGAATCGTTTTGTTTTTTAGGTTCCGCTAAAGCGGAAGCGGTGGAAAAAGTAATTAAACGAGTTAGGAAGTTAAAGGAAAACGTGAGCGCGCGCCAAATGCGGAGACGCCGGCGCGCGAACAATGAGCTGCCGGAGGAATCGGAAAAGCGGATTTCCAAAACAATGATGAGAAGGAACGCGTTGACCATTCTGGAGTGTTCAACCGCGTGGGCGTTCCGCTGGTTTCACAGCGCGTTTTACTGCTCCTATTGCGACGAAAAGTTCGTTGATACCGCACCCCTGCGGGAACACGTAATCGCATCACACATCTCGAATAATCCCACTGGACGCGTATTCTCAAAATTAACCGAAAACAACATGCTTAAAATCGACATCACCAATTTAAGTTGCAGGCTCTGCAGCTGCAGCTGCAGCAgcataaatatacttaaagatCACTTGACAACAGcacataaaaagaaaatttcgaACGAGCACAGCGATGGTGTGTTACCGTTCAAACTCGACCAGAACGGGTTCTACTGtcaaatatgttttgaatatttCACCAGCTTTACAAAGTTAAACGAGCATATGAATTCGcattatcaaaattatatatgtgaCGCTTGCGGAAAAGCTTTCGTCTCGAAATCTAGATTCAGAACTCATGTACAGTCGCACGAAATCGGAAGTTTCCCTTGCGGTGAATGCGATGAGGTGTTACACACGCGGGCTGCTCGCATGTGTCATAGGTTGAAAGTGCACAAGAAAGGTGTTAGGTACACATGCCCGCGTTGTTCAGAAGTTTTCACAACTTATTACACGAGAGCGAAACACTTGGTCGAGAGGCACGCGCAGCAGAGGAGGGACTATGAGTGCACTGCTTGCGGGAAAGCCTTCGAGACGAGTTGCAAGCGGGCAACGCACTTTCGCGCAACCCACAAACCTGTCGAGAAACGATACGAGTGTCTGTATTGCCCTTGGTACTTTGTCAGAAACGAAGAAATCATTGCATCCGAGCAAAAAGAAAAGGTTAAAGTTAAATGGAACAGGAAACGTAAGCTAGCCGAGGATAAATCCAATGCAGCAATTATCTTGCAATGTTCAAACGCCGTCACATTTAGATGGAAACGTGGAAGGTTCATGTGTAGCTACTGTCCCCGCGTGTTCCCCAGCGTCGCCGACATCCGTCTCCACTCTGTCGAGCATAAAAATAAACTGGCTGTCTTCGAAAATTCCAAAGTGCGAAATTCTTTCCCTCTACGAGTAGACATTGCTGATCTGACTTGTAATTTGTGTAGGCAAAAATTTGACAATTTGGATAATATCGTAGTCCATCTGTCGGAAGTACACGAGAAAAGTTTCCATATGAATCATGGCAATGGTTTGTTGCCGTTTATGCTGACTGATGGGGAATACAGATGCGTTGATTGCCACAATCAGTACGAGAGTTTCATGGGTCTTTTGGCTCACATGAACCAACATTATGCTACTTTCATCTGTTATATCTGTGGCAAGGGTTACTCAGGGAAACATAAACTGCAGTCCCACCTAAAGTGCCACGAGTCGGGGAAATTCGAGTGCCCCAAGTGCGACAGTGTGCTGCCGAGTAGGACTGCTAAGAGTAGACATCTGTCGGTTGCTCATGGACCTAGAGAACGTTATCGATGTCCGCTCTGCGAAGAACACTTCATCTCTTATCATTCTCGATTACGGCATCTAGACAAAGTTCACGGAAGAAAGTCTGAGTATAGATGCAATATGTGTACTTCTATATTTGCTAGTGgAACCGCGGATAACAATGTTAGATGGAAACCGAATCGCAAGTACAACGATCAAAGAGATAACGCCGGTGTTATTATTGAGTTTTCCAACATTTGCCCGTTTAGATGGAAAAGAGGTGAATTCGCTTGTGCCTATTGTCCAATCACATTTGGGGATTTCACGGATGTCAGGAGGCACACAGCGAACCACCTCCACAGGGTCGAGGCACTGCGCTATGTGCGACCAGTCAATTCAATCAAAGCCGATATCTCAAATTTGCAATGCGTCCTCTGTTTTAAAGGCATGGAAGATCTAAACGGGCTTGCCGACCATTTGTTCACCGACCACAACAAACCAATCGATAAACAATTCGGTTTCGGCATAACCCCATTCTTTTTGAATAGCAAAAAGTACGTTTGCTACCATTGCAAAAAGCATTACGACTTATTTACAAATCTAAACATTCACATGAATCAGCACGATAGGAATAACGTATGCTTCAAATGCGGCAAAACTTTCTCCTCCTCCCATCGGCTACAGGCTCACATGATCACCCACGAGGGTGCTGATGATATGTTTAGATGCACCAAATGCAGCGATACCTTTGCCACACGGAAGCTCATGAGCAGCCACATGAACTGCAAACACGGTACACCGTACAGATACAAGTGTCCTTACTgcaaagataaatttaaaacctACGGCGATAGATCGAAGCATCTTAAAAAAGACCACAATAGAAATGTTGAATATCCTTGTCATCTGTGCACTGCTGTGTTCGCTCAATGTAACCAAAGGACGAAACACATCCAGCGTGTTCACTTTAAATTTGAACCTTACAAATGTCAGTATTGCGATTACAAATCCTCAACGTCATCCAAGTTGCAGAATCATGCGCTGATACACTTGTCTTCGAAGCAGTTTAAGTGCGACGCTTGCGATCAAGTCTGCAACAGGTTGAAAACATACCGTCAGCACATACGTACGCACAATGTGGACAAACTGTACATCTGCGAATGCTGCAATAGAGAATTTGCACACAAGCACTGTCTGGAGAGCCACTTGAAGACCATCCATTCAGAAATCCAAaagtaa
- Protein Sequence
- MRIHMKDGNVPFRFSNTESFCFLGSAKAEAVEKVIKRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNALTILECSTAWAFRWFHSAFYCSYCDEKFVDTAPLREHVIASHISNNPTGRVFSKLTENNMLKIDITNLSCRLCSCSCSSINILKDHLTTAHKKKISNEHSDGVLPFKLDQNGFYCQICFEYFTSFTKLNEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGECDEVLHTRAARMCHRLKVHKKGVRYTCPRCSEVFTTYYTRAKHLVERHAQQRRDYECTACGKAFETSCKRATHFRATHKPVEKRYECLYCPWYFVRNEEIIASEQKEKVKVKWNRKRKLAEDKSNAAIILQCSNAVTFRWKRGRFMCSYCPRVFPSVADIRLHSVEHKNKLAVFENSKVRNSFPLRVDIADLTCNLCRQKFDNLDNIVVHLSEVHEKSFHMNHGNGLLPFMLTDGEYRCVDCHNQYESFMGLLAHMNQHYATFICYICGKGYSGKHKLQSHLKCHESGKFECPKCDSVLPSRTAKSRHLSVAHGPRERYRCPLCEEHFISYHSRLRHLDKVHGRKSEYRCNMCTSIFASGTADNNVRWKPNRKYNDQRDNAGVIIEFSNICPFRWKRGEFACAYCPITFGDFTDVRRHTANHLHRVEALRYVRPVNSIKADISNLQCVLCFKGMEDLNGLADHLFTDHNKPIDKQFGFGITPFFLNSKKYVCYHCKKHYDLFTNLNIHMNQHDRNNVCFKCGKTFSSSHRLQAHMITHEGADDMFRCTKCSDTFATRKLMSSHMNCKHGTPYRYKCPYCKDKFKTYGDRSKHLKKDHNRNVEYPCHLCTAVFAQCNQRTKHIQRVHFKFEPYKCQYCDYKSSTSSKLQNHALIHLSSKQFKCDACDQVCNRLKTYRQHIRTHNVDKLYICECCNREFAHKHCLESHLKTIHSEIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01494498;
- 90% Identity
- iTF_01494498;
- 80% Identity
- -