Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067297.1:6100083-6103765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0036 0.35 12.1 0.1 1 23 92 115 92 115 0.91

2 22 0.0014 0.14 13.3 2.6 1 23 186 208 186 208 0.98

3 22 0.00011 0.011 16.8 0.5 1 23 212 234 212 234 0.97

4 22 0.0063 0.6 11.3 0.8 1 23 268 291 268 291 0.91

5 22 0.057 5.5 8.3 1.9 1 23 298 321 298 321 0.93

6 22 2.9e-05 0.0027 18.7 0.5 1 23 328 350 328 350 0.97

7 22 0.036 3.5 8.9 0.1 1 20 404 423 404 426 0.86

8 22 0.0073 0.7 11.1 0.3 2 23 452 474 451 474 0.93

9 22 0.15 14 7.0 1.4 1 23 496 518 496 518 0.98

10 22 0.0093 0.89 10.8 4.1 1 21 522 542 522 544 0.94

11 22 0.14 14 7.0 0.1 1 23 549 572 549 572 0.95

12 22 0.066 6.3 8.1 2.7 1 23 578 601 578 601 0.95

13 22 0.017 1.6 9.9 0.1 1 23 659 681 659 681 0.95

14 22 2.5 2.4e+02 3.1 0.3 2 23 705 727 704 727 0.95

15 22 0.016 1.5 10.1 5.7 1 23 749 771 749 771 0.98

16 22 5.2e-06 0.00049 21.0 2.5 2 23 776 797 776 797 0.97

17 22 0.63 60 5.0 4.4 1 21 804 824 804 827 0.95

18 22 0.0085 0.81 10.9 3.0 1 23 833 856 833 856 0.98

19 22 0.0089 0.85 10.8 3.0 1 23 862 885 862 885 0.97

20 22 7e-05 0.0067 17.5 1.6 1 23 891 913 891 913 0.98

21 22 0.006 0.58 11.4 2.3 1 23 919 941 919 941 0.99

22 22 0.2 19 6.6 8.1 1 23 947 970 947 970 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0036	0.35	12.1	0.1	1	23	92	115	92	115	0.91
2	22	0.0014	0.14	13.3	2.6	1	23	186	208	186	208	0.98
3	22	0.00011	0.011	16.8	0.5	1	23	212	234	212	234	0.97
4	22	0.0063	0.6	11.3	0.8	1	23	268	291	268	291	0.91
5	22	0.057	5.5	8.3	1.9	1	23	298	321	298	321	0.93
6	22	2.9e-05	0.0027	18.7	0.5	1	23	328	350	328	350	0.97
7	22	0.036	3.5	8.9	0.1	1	20	404	423	404	426	0.86
8	22	0.0073	0.7	11.1	0.3	2	23	452	474	451	474	0.93
9	22	0.15	14	7.0	1.4	1	23	496	518	496	518	0.98
10	22	0.0093	0.89	10.8	4.1	1	21	522	542	522	544	0.94
11	22	0.14	14	7.0	0.1	1	23	549	572	549	572	0.95
12	22	0.066	6.3	8.1	2.7	1	23	578	601	578	601	0.95
13	22	0.017	1.6	9.9	0.1	1	23	659	681	659	681	0.95
14	22	2.5	2.4e+02	3.1	0.3	2	23	705	727	704	727	0.95
15	22	0.016	1.5	10.1	5.7	1	23	749	771	749	771	0.98
16	22	5.2e-06	0.00049	21.0	2.5	2	23	776	797	776	797	0.97
17	22	0.63	60	5.0	4.4	1	21	804	824	804	827	0.95
18	22	0.0085	0.81	10.9	3.0	1	23	833	856	833	856	0.98
19	22	0.0089	0.85	10.8	3.0	1	23	862	885	862	885	0.97
20	22	7e-05	0.0067	17.5	1.6	1	23	891	913	891	913	0.98
21	22	0.006	0.58	11.4	2.3	1	23	919	941	919	941	0.99
22	22	0.2	19	6.6	8.1	1	23	947	970	947	970	0.96

Sequence Information

Coding Sequence: ATGAAGGATGGGAATGTTCCTTTTCGATTTAGTAACACAGAATCGTTTTGTTTTTTAGGTTCCGCTAAAGCGGAAGCGGTGGAAAATGTAGTTAAGCGAGTTAGGAAGTTAAAGGAAAACGTGAGCGCGCGCCAAATGCGGAGACGCCGGCGCGCGAACAATGAGCTGCCGGAGGAATCGGAAAAGCGGATTTCCAAAACAATGATGAGAAGGAACGCGTTGACCATTCTGGAGTGTTCAACCGCGTGGGCGTTCCGCTGGTTTCACAGCGCGTTTTACTGCTCCTATTGCGACGAAAAATTCGTTGATACCGCACCCCTGCGGGAACACGTAATCGCATCACACATCTCGAATAATCCCACTGGACGCGTATTCTCAAAATTAACCGAAAACAACATGCTTAAAATCGACATCACCAATTTAAGTTGTAGGCTCTGCAGCTGCAGCTGCAGCAGCATAAATATACTTAAAGATCACTTGATAACAGcacataaaaagaaaatttcgGACGAGCACAGCGATGGTGTGTTACCGTTCAAACTTGACCAGAACGGGTTCTACTGTCAAATATGTTTCGAATATTTCACCAGTTTTACAAAGTTAAACGAGCATATGAATTCGcattatcaaaattatatatgtgACGCTTGCGGAAAAGCTTTCGTCTCGAAATCTAGATTCAGAACTCATGTTCAGTCGCACGAAATCGGAAGTTTCCCCTGCGGTGAATGCGATGAGGTGTTACACACGCGGGCTGCTCGCATGTGTCATAGGTTAAAAGTGCACAAGAAAGGTGTTAGGTACACATGCCCGCGTTGTTCAGAAGTTTTTACAACTTATTACACGAGAGCGAAACACCTGGTCGAGAGGCACGCGCAGCAGAGGAGGGACTATGAGTGCACTGCTTGCGGGAAAGCCTTCGAGACGAGTTGCAAGCGGGCAACGCACTTTCGCGCAACCCACAAACCTGTCGAGAAACGATACGAGTGTCTGTATTGCCCTTGGTACTTTGTCAGTCGGTCAAAACTGAATCGACATCTACAGGCCCACGACGGCGAAGACCGAGCGCAAGAAATCATTGCATCCGAACAAAAAGAAAAGGTTAAAGTTAAATGGAACAGGAAACGTAAGCTAGCCGAGGATAAATCCAATGCAGCAATTATCTTGCAATGCTCAAACGCCGTCACATTCAGATGGAAACGTGGAAGGTTCATGTGTAGCTACTGTCCCCGCGTGTTCCCCAGCGTCGCTGACATCCGTCTCCACTCTGTCGAGCATAAAAATAAACTGGCTGTCTTCGATAATTCCAAAGTGCGAAATTCTTTCCCTTTACGAGTAGACATTGCTGATCTGACTTGTAATTTGTGTAGGCAAAAATTTGACAATTTGGATAATTTCGTAGTCCATCTGTCGGAAGTACACGAGAAAAGTTTCCATATGAATCATGGCAATGGTTTGTTGCCGTTTATGCTGACTGATGGGGAATACAGATGCGTTAATTGCCACAATCAGTACGAGAGTTTCATGGGTCTTTTGGCTCACATGAACCAACATTATGCTACTTTCATCTGTTATATCTGTGGCAAGGGTTACTCAGGGAAACATAAACTGCAGTCCCACCTAAAGTGCCACGAGTCGGGGAAATTCGAGTGCCCCAAGTGCGACAGTGTGCTGCCGAGTAGGACTGCTAAAAGTAGACATCTGTCGGTTGCTCATGGACCTAGAGAACGCTATCGATGTCCGCTCTGCGAAGAACACTTCGTCTCTTATCATTCTCGATTACAACACCTAGACAAAGTTCACGGAAGAAAGTCTGAGTATAGATGCAATATGTGTACTTCTATATTTGCTAGTGgAACCGCGGATAACAATGTTAGATGGAAACCGAATCGCAAGTACAACGATCAAAGAGATAACGCCGGTGTTATTATTGAGTTTTCGAACATTTGCCCGTTTAGATGGAAAAGAGGTGAATTCGCTTGTGCCTATTGTCCGATCACATTTGGGGATTTCACGGATGTCAGGCGGCACACAGCGAACCACCTCCACAGGGTCGAGGCACTGCGCTATGTGCGACCAGTCAATTCGATCAAAGCCGATATCTCAAATTTGCAATGCGTCCTCTGTTTTAAAGGCATGGAAGATCTAAACGAGCTTGCCGACCATTTGTGCACCGACCACAACAAACCAATCGATAAACAAATCGGTTTCGGCATAACCCCATTCTTTTTGAATAGCAAAAAGTACGTTTGCTACCATTGCAAAAAGCATTACGACTTATTTACAAATCTAAACATTCACATGAATCAGCACGATAGGAATAACGTATGCTTCAAATGCGGCAAAACTTTCTCCTCCTCCCATCGGCTACAGGCTCACATGATCACCCACGAGGGTGCTGATGACATGTTTAGATGCACCAAATGCAGCGATACCTTTGCCACACGGAAGCTCATGAGCAGCCACATGAACTGCAAACACGGTACACCGTACAGATACAAGTGTCCTTACTgcaaagataaatttaaaacctACGGCGATAGATCGAAGCATCTTAAAAAAGACCACAATAGAAATGTTGAATATCCTTGTCATCTGTGCACCGCTGTGTTCGCTCAATGTAACCAAAGGACGAAACACATCCAGCGTGTTCACTTTAAATTTGAACCTTACAAATGTCAGTATTGCGATTACAAATCCTCAACGTCATCCAAGTTGCAGAATCATGCGCTGATACACTTGTCTTCGAAGCAGTTTAAGTGCGACGCTTGCGATCAAGTCTGCAACGGGTTGAAAACATACCGTCAGCACATACGTACGCACAATGTGGACAAACTGTACATCTGCGAATGCTGCAACAGAGAATTTGCACACAAGCACTGTCTGGAGAGCCACTTGAAGACCATCCATTCAGAAATTCAAAAgtga
Protein Sequence: MKDGNVPFRFSNTESFCFLGSAKAEAVENVVKRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNALTILECSTAWAFRWFHSAFYCSYCDEKFVDTAPLREHVIASHISNNPTGRVFSKLTENNMLKIDITNLSCRLCSCSCSSINILKDHLITAHKKKISDEHSDGVLPFKLDQNGFYCQICFEYFTSFTKLNEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGECDEVLHTRAARMCHRLKVHKKGVRYTCPRCSEVFTTYYTRAKHLVERHAQQRRDYECTACGKAFETSCKRATHFRATHKPVEKRYECLYCPWYFVSRSKLNRHLQAHDGEDRAQEIIASEQKEKVKVKWNRKRKLAEDKSNAAIILQCSNAVTFRWKRGRFMCSYCPRVFPSVADIRLHSVEHKNKLAVFDNSKVRNSFPLRVDIADLTCNLCRQKFDNLDNFVVHLSEVHEKSFHMNHGNGLLPFMLTDGEYRCVNCHNQYESFMGLLAHMNQHYATFICYICGKGYSGKHKLQSHLKCHESGKFECPKCDSVLPSRTAKSRHLSVAHGPRERYRCPLCEEHFVSYHSRLQHLDKVHGRKSEYRCNMCTSIFASGTADNNVRWKPNRKYNDQRDNAGVIIEFSNICPFRWKRGEFACAYCPITFGDFTDVRRHTANHLHRVEALRYVRPVNSIKADISNLQCVLCFKGMEDLNELADHLCTDHNKPIDKQIGFGITPFFLNSKKYVCYHCKKHYDLFTNLNIHMNQHDRNNVCFKCGKTFSSSHRLQAHMITHEGADDMFRCTKCSDTFATRKLMSSHMNCKHGTPYRYKCPYCKDKFKTYGDRSKHLKKDHNRNVEYPCHLCTAVFAQCNQRTKHIQRVHFKFEPYKCQYCDYKSSTSSKLQNHALIHLSSKQFKCDACDQVCNGLKTYRQHIRTHNVDKLYICECCNREFAHKHCLESHLKTIHSEIQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01495956;
90% Identity: iTF_01495956;
80% Identity: -