Tobl023478.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000456.1:495010-498071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0063 0.56 11.3 2.0 1 23 84 107 84 107 0.94 2 17 0.021 1.8 9.7 0.1 1 23 179 201 179 201 0.98 3 17 0.00028 0.024 15.6 0.2 1 23 205 227 205 227 0.98 4 17 7.4e-05 0.0065 17.4 1.3 1 23 232 255 232 255 0.96 5 17 0.0079 0.69 11.0 0.8 2 23 262 284 262 284 0.93 6 17 0.05 4.4 8.5 7.3 1 23 291 314 291 314 0.96 7 17 0.00032 0.028 15.4 5.4 1 23 320 342 320 342 0.97 8 17 0.028 2.5 9.3 0.5 1 23 477 500 477 500 0.91 9 17 0.0081 0.71 11.0 0.4 2 23 526 547 525 547 0.96 10 17 0.00011 0.0095 16.9 0.2 1 23 569 591 569 591 0.97 11 17 3.5e-06 0.00031 21.6 0.7 1 23 595 617 595 617 0.98 12 17 3.6e-06 0.00032 21.5 0.7 1 23 622 645 622 645 0.97 13 17 0.0008 0.07 14.1 0.8 2 23 652 674 652 674 0.96 14 17 7.7e-05 0.0068 17.3 1.3 1 23 680 703 680 703 0.98 15 17 0.047 4.2 8.6 7.1 1 23 709 731 709 731 0.97 16 17 0.0019 0.17 12.9 1.0 1 23 737 759 737 759 0.98 17 17 0.0013 0.11 13.5 1.9 2 23 765 787 764 787 0.95
Sequence Information
- Coding Sequence
- ATGGTTACGATGGCAAAGCTGCCCCACAGGGTTGCCATACCCTCACCGGCTCCAAACTTTATTCCTTCTCGTAGCTCTTCGCCTCTATCGATGGGTGGCAGGACGCCACCATCAGACGTAGTCATTGACGACACAATAGAAATACCACTACCATCACAAGCCGCAAATAAACAGGCGGACAATCGTCAAAACGCACTGACTCTGTTCGAATTCTCCACGGTGTACCCGTTCATCTACGGAAACAATAAGTTCAAATGCTTCATATGCTCGCAGCCGTTTCTACAATCAGCTCTGCTTAGGCGTCACATGCACGACACGCACACATTTGCGCCACTAAAACGTCTAGTTAACAACCGCAGGGAGAACGTAATAAAAGTTGATGTAAGCGAAATGACATGCAAGCTGTGCTCTGATAAACCTGATGATTTACAACAACTCAAGTTACATTTAAAGCAGGATCACCAAAAACTCATTGATCCGGAACTCAAGGATAATATAATTCCGTTCAGGCTCGAAGGTGACGAAGAGGAAGGCTTCAAATGTGTAATGTGCGATGGAATCTTCATTAAAGTTAGAACGCTCGTCATCCACATGAGCGTACACTTCAACAACTACAGCTGTGAGATCTGCGGTTCTGGTTTCATGACTTTGCGATTGTTGAAGAAGCATCTAGAAGTCCACGAGAGCGGGAACTTCCCCTGCGACCGTTGTAGTAAAGTCTTCAACACTTCGCACAAATTGTCCCTGCACATCAGAGGTGTGCACCTGAAGCAGTATCCTCGTCGTTGTCCCATGTGCCCCGAGAGATTCAATTCGAACTACCGTCGCACTAAACATTTGCAGGACGTCCACAATCAGTCGACTCGTGTGCATAAATGTAAGACGTGCGGTCGTGCTTTCAACTTGAAGTATCACCTGGTGTGTCACACCCGTTCGGTCCATCTCCAGGAGAGGAACCACCAATGCAAAGTCTGCTTGCAGAGATTTTGCAATAAGGAAACGTTGAAAAGGCATATGGTGATTCACACGGGGGCCATCCATGTAACAAATTCGTCTATAATACTGAAGGATGATGACGGCTCtgatattaaattatcaatCCTCAAGAAGCCAATATGTATCGATAATCTGATTTGCGAAAATGAAGAGGACAATGAGAAAGGGTTTGATGAAATACCCCAGGTTAAAGAGATTGATTTACATTCTGACGATAATCCTGTAGTAAAGTTTTTGAAGGAACCGATATCTTTAGATAAGATTGGAAATGGTACCAAGATGTCCTTTCAAAGCTCATCGCATAACTTGGTCATTAGAAATTTTACAAAACCATTTAAAAGGAATATTACTGATGAGTTGACGTGGAAACAAAATGCCCTAACAATTTTTGAGTTTTCTTATGTCTATCCATTCGTACACACAAAGAATAAATACAAATGTTACGTCTGCTCTAAACCGTTCATAGACGGTGACACGATGAGAGAACATTTCATAAACCGTCACACCTTCGAGGAAGTCAGaagagagataaaaaaaaatatccgggACAAAGTTATAAAAGTTGACATTGCACGACTTCAATGTAAAGTTTGTAACATAATACTAACgaacttaaataaacttaaaattcaTCTTAAAGATCACCGGAAAAACATCAATCCGGAATACCAAGATAATATAATACCGTTTAAGTTGGTCGATGACGTTTTCGATTGCCAAATCTGCGGCGAAGGTTTCCAAAGGCTTCGATTGCTCATCATCCACATGAGCAAACATTTCAATAACTTCAGCTGTGAAACCTGTGGCAgagtttttatatctataaatttattgaagAGACACCAACAGACCCACGCAACAGGAAGCTATCCGTGTGATAAATGCGACAAGGTTTTCACCAATCAATCGAAGAGGATCAATCACATCAAAAGCGTTCATTTGAAACAGTGCATGCGGTCGTGTCCTTATTGCTCCGAGAGATTTAACTCCTATTATCAACGGAGCAAGCACCTAAGAGTCGCACACAATCAATTAAGTCTGTACAGTTGCGAAACTTGCGGCAAGCGGTACGACCTGAAGTACCAGCTCTATCTTCACCAGAGGTCTGTTCACATGCAGGAAAGGAACCATGAATGTGGCGTATGCCACTCCCGTTTCTTTTCAAAATATTGTCTCTTAAGACACATGACGATACACACCGGTTATAAAAAATTCAAGTGCGAAACCTGTGGCAAGATTTACTTAAGAAGAAAGGATCTTCTAGAACATGCAAAGAAACATGAAGCAGTGGAATGCACATGTTCAATCTGTAATCAAACTTTTATTGATCATGCAGCTATGATGACTCACATGGGAACTATGCACAACgtcatatag
- Protein Sequence
- MVTMAKLPHRVAIPSPAPNFIPSRSSSPLSMGGRTPPSDVVIDDTIEIPLPSQAANKQADNRQNALTLFEFSTVYPFIYGNNKFKCFICSQPFLQSALLRRHMHDTHTFAPLKRLVNNRRENVIKVDVSEMTCKLCSDKPDDLQQLKLHLKQDHQKLIDPELKDNIIPFRLEGDEEEGFKCVMCDGIFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCDRCSKVFNTSHKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCKTCGRAFNLKYHLVCHTRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGAIHVTNSSIILKDDDGSDIKLSILKKPICIDNLICENEEDNEKGFDEIPQVKEIDLHSDDNPVVKFLKEPISLDKIGNGTKMSFQSSSHNLVIRNFTKPFKRNITDELTWKQNALTIFEFSYVYPFVHTKNKYKCYVCSKPFIDGDTMREHFINRHTFEEVRREIKKNIRDKVIKVDIARLQCKVCNIILTNLNKLKIHLKDHRKNINPEYQDNIIPFKLVDDVFDCQICGEGFQRLRLLIIHMSKHFNNFSCETCGRVFISINLLKRHQQTHATGSYPCDKCDKVFTNQSKRINHIKSVHLKQCMRSCPYCSERFNSYYQRSKHLRVAHNQLSLYSCETCGKRYDLKYQLYLHQRSVHMQERNHECGVCHSRFFSKYCLLRHMTIHTGYKKFKCETCGKIYLRRKDLLEHAKKHEAVECTCSICNQTFIDHAAMMTHMGTMHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01130189;
- 90% Identity
- -
- 80% Identity
- -