Pkot000315.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01000070.1:8516-11911[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0081 0.73 11.1 2.0 1 23 160 183 160 183 0.94 2 17 0.026 2.4 9.5 0.1 1 23 255 277 255 277 0.98 3 17 0.00035 0.032 15.4 0.2 1 23 281 303 281 303 0.98 4 17 9.5e-05 0.0086 17.2 1.3 1 23 308 331 308 331 0.96 5 17 0.01 0.9 10.8 0.8 2 23 338 360 338 360 0.93 6 17 0.064 5.8 8.3 7.3 1 23 367 390 367 390 0.96 7 17 0.0004 0.037 15.2 5.4 1 23 396 418 396 418 0.97 8 17 0.0054 0.49 11.7 2.5 1 23 563 585 563 586 0.95 9 17 0.79 72 4.9 1.0 2 23 612 633 611 633 0.95 10 17 0.00012 0.01 16.9 0.3 1 23 655 677 655 677 0.97 11 17 1e-06 9.4e-05 23.4 0.3 1 23 681 703 681 703 0.99 12 17 3.6e-06 0.00033 21.7 0.8 1 23 708 731 708 731 0.98 13 17 0.00027 0.025 15.8 1.4 2 23 738 760 738 760 0.96 14 17 0.00074 0.067 14.4 1.5 1 23 766 789 766 789 0.98 15 17 0.011 1 10.7 4.6 2 23 796 817 795 817 0.97 16 17 1.2e-05 0.0011 20.1 1.1 1 23 823 845 823 845 0.97 17 17 0.006 0.54 11.5 0.6 2 22 851 871 850 874 0.90
Sequence Information
- Coding Sequence
- ATGGCTCACGAAGCGGTGATGGCTAGGTCTGTAAAAGCAGTCTTACCTGCTTCATTTTCtgtgaaagaaaacatcgtGAAGGAATCATGTTTCATGAACAACTGTTTTTATAGATCGGACAATTCGGATATACAGGCGCCATCAACAAAAAAGATCGTGCCGTTGTTTCAAGTGGATTACGATCGCAGCCTGTGTAGACCACTGGGGACTGTAACCAACTTTAAAAAGATGGTTACGATGGTAAAGCTGCCCCACAGGGTCGCTATAGCCTCACCGGCTCAAAACTATTTTCCTTCTCGCAGCCCTTCGCCTCTATCAGTGGGTCTCAGGTCATCACCATCAGACGACGCTATTGACGATGCAATTGAAACACAATTACCAACACAAGGCGTAAATAAACAAGCGGATAATCGTCAAAACGCACTGGCTCTCTTCGAATTCTCTACCGTGTACCCGTTTATCTACGGGAACAACAAGTTCAAATGCTTCATATGCTCACAGCCGTTTCTACAATCAGCTCTGCTTAGGCGTCACATGCACGACACACACACATTCGCGCCGCTAAAACGTTTAGTTAACAATCGCAGGGAGAATGTAATTAAAGTTGATGTCAGCGAAATGACATGCAAGCTATGCTCTGATAAACCTGATGATTTACACCAActcaaattacatttaaagcaGGATCACCAAAAGCTGATTGATCCGGAACTCAAGGATAATATTATTCCGTTCAGGCTTGAAGGCGACGAAGAGCAAGGATTCAAATGTGTAATGTGCGATGGAATCTTCATCAAAGTGCGAACGCTCGTCATACACATGAGTGTACACTTCAACAATTACAGCTGTGAGATCTGCGGCTCTGGTTTTATGACTTTACGATTATTGAAGAAACATCTAGAAGTCCACGAAAGCGGGAACTTCCCCTGCGATCGTTGCAGTAAAGTTTTCAACACTTCACATAAATTGTCCCTACACATTAGAGGTGTGCACCTGAAGCAGTACCCTCGCCGCTGTCCCATGTGCCCGGAGAGGTTTAATTCGAACTACCGTCGCACTAAACATTTGCAGGACGTCCACAACCAGTCGACTCGTGTACACAAATGCAAGACATGCGGCAGAGCTTTCAACTTGAAGTATCACCTGGTGTGTCATACGCGTTCGGTCCACCTCCAGGAGAGGAACCACCAATGCAAAGTGTGCTTACAGAGATTCTGCAATAAAGAAACACTGAAAAGGCATATGGTTATTCATACGGGGGTCATCCACGTAACAAATTCATCCATAATACTGAAGGATGATGACGGCTccgatattaaattatcagtTCTCAAGAAACCTATATGTATTGATAACCTAATTTGCGAAAACGAAGATGTCGACGATAAAAAACCTAAAGAAAAAGATGAAAAGAAATGGTTTTATGAAATACCCAAGAATGAAAAgattgatttttgttttgacgataaacctttaataaaatttttgagggAACCAATATCTTTAGACAAAATTGGGAATGGTGCGAAGATGTCCTTCGATAATTCAACACAAAAAGTAGCTATAAGAAATGTAACAAAAGCTCcgagaaaaaatattactcatGAGCAATCAACGTGGAAACAAAATGCCCTCACAATCTTTGAGTTTTCATACGTCTATCCATTCATACACACAagcaataaatacaaatgttacGTGTGTTCCAAAACTTTCATAGACGGGAACATGTTGAGAGAACATTTCATGAACCATCACAGCTTCGAAGAGGTACGAAGGGAGATCAAAAGAAATGTTcgagataaaattataaaagttgatATTGCGCGACTGCAATGCAAACTTTGTCACATTATGCTTACCaacttaaatatacttaaaattcatCTCAAAGATCATGGGAAAAAAATCAATCCGGAATATCAAGATAACGTAATACCGTTTAAGTTAGTTGGTGACGTATTCGATTGCCAGATCTGCGGTGAAAATTTCCAGAGGCTTCGATTGCTCATCATTCACATGagcaaacattttaataactacagcTGTGAAATCTGTGGAAGGgtttttgtatctataacCTTATTGAAGAGACACTTACAGACCCACGCAACGGGAAGCTATCCGTGTGAAAAATGTGACAAGGTCTTCACGAATAAATCGAAGAAGATCAGTCACATTAGAAGTGTCCATTTGAAACAGAGCATGCGGTCGTGTCCGTACTGCTCCGAGAGATTTAGCTCGAATTATCAACGAAGCAAGCACTTGAGAATAACTCACAACCAAACGAGTCGGTATAGATGCGAAACGTGCGGCAGACAGTATGACTTGAAGTATCAATTGTATCTTCACCGGAGGTCTGTTCACATGCAGGAACGGAACCAGGAATGTGGAGTGTGCCACTCCCGtttcttttcaaaatattgtcTCTCTAGACACATGATGATACACACcggtgataaaaaatttaaatgcgAAAGGTGTGGGAAGGCTTACGCGAGAAGAAAAAATCTTCTACAACATACAAAGGCTCATGAAGCGTTGGATAAGACATGCTCAGTCTGTAATGAAACTTTTATCGATCACGCAACTATGATGTCGCACATGGGCACTATACAACATGTAGTATAA
- Protein Sequence
- MAHEAVMARSVKAVLPASFSVKENIVKESCFMNNCFYRSDNSDIQAPSTKKIVPLFQVDYDRSLCRPLGTVTNFKKMVTMVKLPHRVAIASPAQNYFPSRSPSPLSVGLRSSPSDDAIDDAIETQLPTQGVNKQADNRQNALALFEFSTVYPFIYGNNKFKCFICSQPFLQSALLRRHMHDTHTFAPLKRLVNNRRENVIKVDVSEMTCKLCSDKPDDLHQLKLHLKQDHQKLIDPELKDNIIPFRLEGDEEQGFKCVMCDGIFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCDRCSKVFNTSHKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCKTCGRAFNLKYHLVCHTRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGVIHVTNSSIILKDDDGSDIKLSVLKKPICIDNLICENEDVDDKKPKEKDEKKWFYEIPKNEKIDFCFDDKPLIKFLREPISLDKIGNGAKMSFDNSTQKVAIRNVTKAPRKNITHEQSTWKQNALTIFEFSYVYPFIHTSNKYKCYVCSKTFIDGNMLREHFMNHHSFEEVRREIKRNVRDKIIKVDIARLQCKLCHIMLTNLNILKIHLKDHGKKINPEYQDNVIPFKLVGDVFDCQICGENFQRLRLLIIHMSKHFNNYSCEICGRVFVSITLLKRHLQTHATGSYPCEKCDKVFTNKSKKISHIRSVHLKQSMRSCPYCSERFSSNYQRSKHLRITHNQTSRYRCETCGRQYDLKYQLYLHRRSVHMQERNQECGVCHSRFFSKYCLSRHMMIHTGDKKFKCERCGKAYARRKNLLQHTKAHEALDKTCSVCNETFIDHATMMSHMGTIQHVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495934;
- 90% Identity
- -
- 80% Identity
- -