Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000001.1:9573351-9581973[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.016 1.4 10.1 1.4 3 23 208 229 207 229 0.92

2 23 0.24 21 6.4 0.3 1 22 608 629 608 629 0.95

3 23 4.6 4.1e+02 2.3 0.3 1 22 671 692 671 694 0.82

4 23 0.38 33 5.7 0.5 2 21 704 723 703 724 0.93

5 23 0.9 79 4.5 0.1 2 23 732 754 731 754 0.89

6 23 0.0041 0.36 11.9 0.1 3 23 775 796 773 796 0.96

7 23 0.0045 0.39 11.8 2.5 1 23 802 825 802 825 0.95

8 23 0.087 7.6 7.7 0.0 1 23 851 874 851 874 0.90

9 23 0.0038 0.33 12.0 3.5 1 23 879 901 879 901 0.97

10 23 0.011 0.94 10.6 0.3 1 23 907 930 907 930 0.95

11 23 0.0016 0.14 13.2 1.3 1 23 944 966 944 966 0.97

12 23 0.00012 0.011 16.7 1.8 1 23 1015 1038 1015 1038 0.97

13 23 0.0014 0.12 13.4 1.5 1 23 1100 1123 1100 1123 0.96

14 23 0.00076 0.067 14.2 2.1 2 23 1147 1169 1146 1169 0.95

15 23 0.0038 0.33 12.0 0.0 2 23 1175 1197 1174 1197 0.94

16 23 0.0068 0.6 11.2 0.2 1 21 1240 1260 1240 1261 0.95

17 23 0.00029 0.025 15.5 1.0 1 23 1271 1293 1271 1293 0.93

18 23 6.1e-05 0.0053 17.7 0.3 2 23 1383 1405 1383 1405 0.93

19 23 4.5e-07 3.9e-05 24.4 1.0 3 23 1412 1432 1411 1432 0.98

20 23 0.0099 0.87 10.7 0.0 3 23 1453 1473 1451 1473 0.96

21 23 0.099 8.6 7.6 0.0 1 23 1496 1518 1496 1518 0.98

22 23 0.019 1.7 9.8 0.6 1 23 1524 1547 1524 1547 0.95

23 23 0.00062 0.054 14.5 0.4 1 23 1555 1578 1555 1578 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.016	1.4	10.1	1.4	3	23	208	229	207	229	0.92
2	23	0.24	21	6.4	0.3	1	22	608	629	608	629	0.95
3	23	4.6	4.1e+02	2.3	0.3	1	22	671	692	671	694	0.82
4	23	0.38	33	5.7	0.5	2	21	704	723	703	724	0.93
5	23	0.9	79	4.5	0.1	2	23	732	754	731	754	0.89
6	23	0.0041	0.36	11.9	0.1	3	23	775	796	773	796	0.96
7	23	0.0045	0.39	11.8	2.5	1	23	802	825	802	825	0.95
8	23	0.087	7.6	7.7	0.0	1	23	851	874	851	874	0.90
9	23	0.0038	0.33	12.0	3.5	1	23	879	901	879	901	0.97
10	23	0.011	0.94	10.6	0.3	1	23	907	930	907	930	0.95
11	23	0.0016	0.14	13.2	1.3	1	23	944	966	944	966	0.97
12	23	0.00012	0.011	16.7	1.8	1	23	1015	1038	1015	1038	0.97
13	23	0.0014	0.12	13.4	1.5	1	23	1100	1123	1100	1123	0.96
14	23	0.00076	0.067	14.2	2.1	2	23	1147	1169	1146	1169	0.95
15	23	0.0038	0.33	12.0	0.0	2	23	1175	1197	1174	1197	0.94
16	23	0.0068	0.6	11.2	0.2	1	21	1240	1260	1240	1261	0.95
17	23	0.00029	0.025	15.5	1.0	1	23	1271	1293	1271	1293	0.93
18	23	6.1e-05	0.0053	17.7	0.3	2	23	1383	1405	1383	1405	0.93
19	23	4.5e-07	3.9e-05	24.4	1.0	3	23	1412	1432	1411	1432	0.98
20	23	0.0099	0.87	10.7	0.0	3	23	1453	1473	1451	1473	0.96
21	23	0.099	8.6	7.6	0.0	1	23	1496	1518	1496	1518	0.98
22	23	0.019	1.7	9.8	0.6	1	23	1524	1547	1524	1547	0.95
23	23	0.00062	0.054	14.5	0.4	1	23	1555	1578	1555	1578	0.96

Sequence Information

Coding Sequence: atgagTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCAACTCGAGGCGAATTACTGCCTATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCATGTCCTCGCATCGAAAATTAGGGATTGTGTGTCCGTAGAGATAAACGAGGATGACGACTTGCCAACTAATGTGTGCAGAAAATGCTGTGACAATGTGAATAACTGGCATATTTTTAAGGCTGTATGTGAGAGGACTCAAAACAAACTACagtctttattaaaaaatgatgGCAGCCAACTAGAAGAGGTGCACATAAAAAGTGAACCTTTCTCTGATGAGGCTTATGATGATGGAGTCATTGTTGATGCATCATATCCTGACCTTGAGtgtgCATCTAGTAAACTTCAACAAGAAGGCCCTCCGATTCTGGCTTCATTGGGACTCACACCAAGGAGTGATAAGGGTATGGAGAGTGAAAATAATGAAGAAGACGACGACGACGAAGAAGAGATGAATGATGATAATAGTCAACATTTCGCAAATGTACCTAACATGCCTGAGGTCTCTATCACTGTTATGCGTCCATCTGGGGAAACTTTGCACGCTCGTCAAGGAATCCAACAACTTGCTTCTAAGGACTGCTTAGTGTGTGGTCGCTCTTATAGATATTCCCATAATGCTAGACGTCACGAGCTCAATTCTCACAATTTTGATagatatacaaacaaaattacaACCAAAAAGTCGCATAATGTACACATGCACCCAAAACTTAGGCCCAATCCATTTAATCCCAAAGCTAGACTTATGCCAAATCCTATCAGCCATAAAATGCAATTAATCCCCAAAGGAATAAGCGCAAAAATTATTCAAGGGAATTCTGTTTCTTCACCAAAACCTATACCAATTAGAACGTCAAACATTCCTCATAATAATTTGCCATATCCACTACGTATAAAAGCACTTAAAGACttacaaataaagaaaaaagaacCGCAAATTCTTAAAACTTTATTGACTACAAAACCGGAAGTTTTGATATCAGAACCAGAAATAATGAATTCGGGCCCTGAAAGTCCAGAAACCTTGATATCCGAGCCAGAGATAGCATCGTTTCAAGTAGAAACTATTCTGTCTGAACCAGATGTTTACAATCACCAAGATGACGAAGATGTAGATTGCGAAACTCAAAATAATCAAGGTCAAAATTATGATACTGTAGACATGGAGTCTGATAATGAGATTGAAATTGCTCGACAACAAGAATGTGGTGTCGAAGTTGATCAACAAATAGATAACGAAGGGGAGGATGGAAATGGAATGGAAAATGTAGATAACGACGATGAAAATAACGGGGAAAGAAATCATAGCGACAATGATCAAATTGACGATAATGCTGATAGTCATGACGTGTTGCAAATTGTTAACGACGTTGAAGGTAGAGGGGATGATGAAACCAAAGAAGGCGAAGAAGGGAACGAGGAtagagatgatgatgagcagCTAGAGTATAACCATGACGACGATTATGACGACTTACCTCCTATAGCTCCAGTCGTAGAAATTAATGAAGATATGCAAACAAATTCTTACAATAGTGAAGCAaacgaagaagaagatatgGACGAAGCTGGCGACGCCAATGAAACCGCCGATGATGTTAAAGAACTTGACCCTGATAAATTGTATGTAACGAAAACACAAAGAGACTTTATACTCAAATATCGCGATATTATCGAGCAGATTAACACAAAAAGATGCCTTTGTTGCGACAGAGAGCATCCGCGGCGCAAAGCGGTGATACAACATTTACAGAAAAACGGACACAAGGTTCCGAAGCACACTTGTTACAATTGTGTTGTTACGTTCGGTCATATCGGCGCTTTACTCAGCCACATGCGGTCTAACACGTGTACCGACTTGtggaaaattatatacaatgaaaacgGGATCACTGACGATTTAGTTTTGGAAGATGAACCTAAAGATACCAAAGTCCAATATAAAGACATTTTTAATGCTAGGTCGTACGCGTGCAAATTATGTCCTGCAAAATTCCAACTGAAACAGTTCATTATGAAACATGTTTTAGACGTGCATGAGGATGGCCAGTCCCGCGTGCAACTCGTGTGCGTCCACTGTAACTCCAGATTCAAGGATAAGGCTATATGGAAGAAGCACATCCGTAATGGGGAATGTACAGTATACATCTCGTGTGACTTATGTTCAGAGAGATTTGGGAACATGCAAGATTTCAATGACCACGCATTGGCTGTACACGCAGGAAGTTTTGACCAATCTGATAATCAAAATAAATGCGTCGACGGGAGACCGACCGACTGTCCGATTTGCGGTAAGAAGAATAGTAGTTATCCAAACTTAGTGaaacatttgaaaattattCACAGTGAAGAAAAACCTCACTACTGCCAGCATTGTGAATCTAAGTTTGAACAAGCTGCTGACTTAAACAAGCATATCTATATGGAACATTCTGACCGAACATTGGGAATGCAAAGTTACGAGCCGGATATGTCGCTCGTTAAAGAAGAAGCCGAGGAATATCACTATTCATGTACAGAATGTAATGCAATATTTGAGACCGTCGATGCTTGGACGGATCATCAGGTGGCTGAACATAATCAAATTGCACATCATTGTGATCAGTGCGATAAGAAATTTTTAAGACCATCTGAACTGGCGGAACACAAGAATACGCATTTACGAGTAAAGTTTTATCCCTGCAGTATTTGCACGAGCTCGTACAGTACACCTCAGAAACTTTCCGAACACGTTCAACAGAACCACCCGGGAGCCGCGGGAGCTTATGCACCTTTAGATTACGAATTTTTCTGCGACATCTGTATAAGATCATTCAAAAGTCGCCAAGCGTACTCGAATCATATGCGTATACACGCTAAGGTACCGACTACTAATAGAAAGCCCGGCGATCCGAAAGGATTTGCCCCACAAATTGTTGGAAAACCAATTAGGTCATTTTCTGTGGTACAGCCTAGTTTTCTTTCGTTCAAACCCAATTGTAATGTTCCTAACGCTCCTTATTCGTGTGATATCTGCGGAAAAGGTTTCATGCACAAGAAGAATATCTGGAAGCATAAGAAAGTGCTCCATGCCGATCTTGTCGGCGACAGGAATGATAGTGAAGAAAACACCATGCAAGCATCTACTGAAGAGGATGAATATAATTTAGACGAAAATGGAGCCATTCTGTCGACTCCCCAGttcaatagttttaattttgctAATTTAACCAATAGTTTCCCGCAGCAGCAGACTACCCAGGACGCTACGCCTTTTTCTTGCGAAATATGTTTCAAACGATTCCCGCTTAGAACAAGCTTATGGAAACATAAACGTGCTAAGCACGGTATCATCAATGCGAGTGCCAGCGGCAGTGCTGACTCTCAAGGTATAATAGGAGAAGGTGGCAGATCGAGTTGTACTATTTGTAAAATTACGTTCTCAGATAAAAAATCATACTACCGTCATAGAAAGAATGTTCACAAGTCCTCTGCACAGATGTGCAAAATTTGCGGGAAACCTTTAAATTCTCCGGTAGAATTGTACGAGCATTTAAAAGCTGCTCATGCTAGAGAGCTACTGGGATATAACGCGAACCAAGGTCCTAGTAAACAGGAGATTGTTCAAGAATTAGAAGTTGAGTATGAAGCTGACCAGGATTCCGTAGATCCCGCCATGGAGTATCAAGCCCGTTATCCATGTGACACTTGCGGTAAGCAGTTTGTTGGGTTACTTGCCTTGCAAAACCATCAATGTATAAATCAATTACAATCGTCCCCTCAGACTTTTGATTGCGAAATTTGTCACAAAAGCTATACCTCTATCTCTGCACTGAAGAGTCACCGGGGCTGGCATTTACGTTCCCCTGACGGTAAAGCGGCCGCCAATAACACCGGCCTTTGGATGCCGCAGCACAAAGTCACTAGCAAAGTCAGCAAACACGAAGTCGTTGACCCGTCGCAACTTGCAAGAGTTACTCATACAAACCCAGCGAGCATAGCCAAAAGAAGACTCCCACCCGAAGTTGAAGTGACCGTCGTGAATCCAAATAAGAAAATGCGCTCCGACGATTCGATAGAGTTGGAGCAACAGAATAATTCATCGACGGGGGCCGAAGACAGGTATTGTAACATATGCGATAAAGAATTCACCAAGCGAGCGGCCTATCAACGTCACATGGACGAAGTTCACCAACCGAATTCCGTGTTCTGTCCGGTATGCGACAAGAGCTTCACACGAAAATCCACGCTGATCGTTCACCTGAAGAAACATTACGAGAGCGGAGAGGGCAGCTCCTCCGTTGTGGATCAGATGGAGGACGATGGGCTTGCGTGCGACATTTGCGGAGCGCAATACGACAGCGAGAGCGCCCTCGCCGCGCACCGCGCGATGCACATCGGCGACGAATCCGGGGAGTCGGACGACGGCGACGACGGCGCCAGCGTGCCGCCGCCGGGCGAGTTCACTTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGCGGGACCTCATCGCCCACCGCTCCATGCACGCGACGCCGACCAAGTTCTTCTGCAACATCTGCAAGGTTTATTTCGCGCGCGCCCTCGACCTCTCGTCGCACACGCGCGCCAGGCACGCGGACAATGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGAGCGGTTTTACATGAACAAGAAGAGCCTGCAGCGGCACATTGAGATGGCCCACTGA
Protein Sequence: MSVNYDRVCRLCLSTRGELLPIFPTTSSDDSEPHVLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKAVCERTQNKLQSLLKNDGSQLEEVHIKSEPFSDEAYDDGVIVDASYPDLECASSKLQQEGPPILASLGLTPRSDKGMESENNEEDDDDEEEMNDDNSQHFANVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNSHNFDRYTNKITTKKSHNVHMHPKLRPNPFNPKARLMPNPISHKMQLIPKGISAKIIQGNSVSSPKPIPIRTSNIPHNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLISEPEIMNSGPESPETLISEPEIASFQVETILSEPDVYNHQDDEDVDCETQNNQGQNYDTVDMESDNEIEIARQQECGVEVDQQIDNEGEDGNGMENVDNDDENNGERNHSDNDQIDDNADSHDVLQIVNDVEGRGDDETKEGEEGNEDRDDDEQLEYNHDDDYDDLPPIAPVVEINEDMQTNSYNSEANEEEDMDEAGDANETADDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKAIWKKHIRNGECTVYISCDLCSERFGNMQDFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCESKFEQAADLNKHIYMEHSDRTLGMQSYEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICTSSYSTPQKLSEHVQQNHPGAAGAYAPLDYEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSVVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFANLTNSFPQQQTTQDATPFSCEICFKRFPLRTSLWKHKRAKHGIINASASGSADSQGIIGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSPVELYEHLKAAHARELLGYNANQGPSKQEIVQELEVEYEADQDSVDPAMEYQARYPCDTCGKQFVGLLALQNHQCINQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLARVTHTNPASIAKRRLPPEVEVTVVNPNKKMRSDDSIELEQQNNSSTGAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHLKKHYESGEGSSSVVDQMEDDGLACDICGAQYDSESALAAHRAMHIGDESGESDDGDDGASVPPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155687;
90% Identity: iTF_01494477;
80% Identity: -