Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000111.1:3588063-3604467[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.3e-05 0.0055 17.6 2.2 1 23 431 453 431 453 0.97

2 16 0.00049 0.043 14.8 0.6 1 20 459 478 459 481 0.94

3 16 1.6e-05 0.0014 19.4 5.6 1 23 500 522 500 522 0.98

4 16 0.00015 0.013 16.4 4.7 1 23 528 550 528 550 0.99

5 16 2.9e-05 0.0025 18.7 5.3 1 23 556 578 556 578 0.97

6 16 8.9e-06 0.00078 20.3 7.3 1 23 584 606 584 606 0.97

7 16 7.6e-07 6.6e-05 23.6 2.7 1 23 612 634 612 634 0.97

8 16 8e-05 0.007 17.3 6.7 1 23 640 662 640 662 0.97

9 16 0.00011 0.01 16.8 6.5 1 23 668 690 668 690 0.97

10 16 3.8e-07 3.3e-05 24.6 1.9 1 23 696 718 696 718 0.98

11 16 3.9e-05 0.0034 18.3 7.9 1 23 724 746 724 746 0.98

12 16 1.9e-06 0.00017 22.4 5.8 1 23 752 774 752 774 0.98

13 16 3.6e-05 0.0031 18.4 6.2 1 23 780 802 780 802 0.97

14 16 1.7e-06 0.00015 22.5 3.2 1 23 808 830 808 830 0.96

15 16 0.00057 0.05 14.6 0.3 1 23 837 859 837 859 0.96

16 16 0.0047 0.41 11.7 3.6 1 23 869 891 869 891 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.3e-05	0.0055	17.6	2.2	1	23	431	453	431	453	0.97
2	16	0.00049	0.043	14.8	0.6	1	20	459	478	459	481	0.94
3	16	1.6e-05	0.0014	19.4	5.6	1	23	500	522	500	522	0.98
4	16	0.00015	0.013	16.4	4.7	1	23	528	550	528	550	0.99
5	16	2.9e-05	0.0025	18.7	5.3	1	23	556	578	556	578	0.97
6	16	8.9e-06	0.00078	20.3	7.3	1	23	584	606	584	606	0.97
7	16	7.6e-07	6.6e-05	23.6	2.7	1	23	612	634	612	634	0.97
8	16	8e-05	0.007	17.3	6.7	1	23	640	662	640	662	0.97
9	16	0.00011	0.01	16.8	6.5	1	23	668	690	668	690	0.97
10	16	3.8e-07	3.3e-05	24.6	1.9	1	23	696	718	696	718	0.98
11	16	3.9e-05	0.0034	18.3	7.9	1	23	724	746	724	746	0.98
12	16	1.9e-06	0.00017	22.4	5.8	1	23	752	774	752	774	0.98
13	16	3.6e-05	0.0031	18.4	6.2	1	23	780	802	780	802	0.97
14	16	1.7e-06	0.00015	22.5	3.2	1	23	808	830	808	830	0.96
15	16	0.00057	0.05	14.6	0.3	1	23	837	859	837	859	0.96
16	16	0.0047	0.41	11.7	3.6	1	23	869	891	869	891	0.98

Sequence Information

Coding Sequence: ATGAATCCTGAACACCACAATATCAATACGGGAGGTGGCCAACCTCCTGGTAACTCTGAGTCCCAAAATCAAAGAGTAACGTCTGGTCAACAACAACAACCACCAACTAGTAATCTAACTCCAACAACGTCAGCTACCGACTTACGAGTTAATTCGGCAGCCGTTAATGTTGCTTTGTCCAGCGTCGCGAAGTATTGGGTGTTTACAAATCTATTTCCTGGGCCAATACCTCAGGTCTCTGTGTATGGGTTACCTTCCAATACAAGAATCGAAAACGGAAAACCTGTACAGGACCTTGGACAATCCCATACAGGCCTTCTAAATGGAGATCCAAATATTATACTTGGTCAACATGGTGGACAGTCACAATTATCTGTGTCGGGACCTAGTGGCCAACAAATACCTGTCACTCAAATTATAGCAACACAATTACCATCTGGGCAGACACATGACTCAATGGTGGCTCACAATCAGCAGCAAGAACTTGCTACTCAACAAAATCCTGGCAATGGAAATCAAGGCTCTGTTAGCACTAGCCAGTCCTCTCATCAGCAGGTACCCAATAATCGGGTCGAGTTTATACAACACCATAACACTGATATGGTAAATCATGTGGGTCACCACTCCCAACATTCGCTTCAGCAGCAGTTAATGTCTAACAATCGGCCCGATCATGCTAACCAACAGATACAACTTACAGTAAGTGAAGATGGAATTGTAACAGTAGTAGAGCCCGGTAGTGGCAAACTTGTAGACAAGGAAGAACTACATGAAGCCATCAAAATGCCTTCTGATCACACTTTAACAGTTCATCAATTGCAGCAGATTGTTGGTCATCATCAGGTTATTgacagtattattaatattgagcAGGCAACTGGAGAGCCAGCAAATATACTTGTAACACAGAATCCTGATGGGACCACTTCTATAGAGACCAGTGCAGCAGACCAACTTATAGTTAAAGATGAGAAGAATGTAGCAAAAATTGAATCCGCCCAATTTGCAATACCTACAGATATTAAAGATATCAAGGGTATTGATTTAAAGAATGTTGGAGCAATGGGTATGGAAGGTGCTGTAGTTAAAATATCAGCAGGTGCCTCCGAGCATGACCTCCATGCAATGTATAAAGTTAATGTTGAGGACCTTTCACAATTGCTGGCTTACCATGAAGTATTTGGTAAACTGAATCCTGAGGGCCAACAGCAACCTAAaACAATAAGTGAAGTTGAAGTTGAACCAGGAACAAGTGCACCCATATCAGAATCTGATTCGTCGCCAGGTCATCATTCCTGTGATATTTGTGGAAAGATATTCCAATTCCGTTACCAACTAATTGTTCACAGACGATACCATGGTGAGAGTAAGCCATACACTTGTCAAGTTTGCGGCACTGCGTTTGCAAACGCTGTGGAGCTGTCTAGACACGGAAAATGTCATTTAgCTGGAGACCCTGCGGAGAGACAGACCAAAAGATTAACCCAAGACAAACCTTATGCATGTACCACTTGCCATAAAACATTCTCTCGTAAAGAGCATTTGGACAACCATGTCCGGAGTCACACAGGAGAAACACCATACAgGTGTCAGTTCTGTGCGAAAACGTTCACTCGCAAAGAGCATATGGTGAACCATGTCCGAAAGCACACAGGTGAAACCCCACACCGATGCGACATCTGCAAGAAAAGTTTCACAAGAAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCATACAAACGATACACCATTCCGATGCGAATTGTGCGGCAAGTCGTTCACAAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGAGAGACGCCGCATCGTTGTGACTTCTGTTCGAAGACGTTTACGCGCAAAGAGCACCTGCTGAACCACGTGCGGCAGCACACCGGGGAGTCGCCACACCGTTGTAGCTTTTGCTCAAAGTCTTTCACTAGGCGGGAGCATCTCGTCAACCACGTGCGTCAGCACACCGGGGAAACGCCTTTCCAATGCGGCTACTGTCCTAAAGCCTTCACTCGGAAAGACCACTTAGttAACCACGTCCGTCAGCACACAGGCGAATCGCCCCACAAATGTTCGTTTTGTACTAAATCGTTCACGCGCAAGGAGCATCTGACAAACCACGTACGCCAACACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCGTTCACCAGGAAGGAGCATCTCACTAACCATATCAGAATACATACCGGCGAGTCTCCACACCGCTGTGAGTTCTGCGAGAAGACATTCACGAGGAAGGAGCATCTTATCAACCATTTAAAACAACACACGGGAGACACCCCACATGCATGCAAAATTTGCTCCAAACCATTTACAAGGAAGGAGCACCTTATAACGCACATGAGAGCTCATAATTGCGGCGAACGCCCGTTCAGCTGTGGGGAGTGCGGCAAGTCGTTCCCGTTGAAAGGAAACTTGCTGTTTCATGAAAGGTCGCATCAAAAAAGCGGTGGCGGAAACAGACCGTTTAGATGTGAAGTTTGCTCTAAGGATTTCATTTGTAAAGggCATTTGGTTTCACATCAACGTATTCATGCGTCTACGGGCGAGGCCGTCGCCAATAATGAGCAGCAGGTGACTGAAGGAGAGCAATGCGGCGACAAGGACACTGCCGACCGCCCCGAACGAAAGCACGACATCAGggCTACTACTGATAATAGACCACCAGAAGAAGATGTAACCCAAAACCAGCAAAGCAACCCTGTTATGCAAATGAACAATCAGGTGCGCACTGGATCTGGTTCGGGTGCGGCCAACGTACCCACATTCAACCACCCTCCGAACACCCAGCATCACGCCGGCAACCCGATCGCTCACCACCCGGTCACCGTGAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGNSESQNQRVTSGQQQQPPTSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPSNTRIENGKPVQDLGQSHTGLLNGDPNIILGQHGGQSQLSVSGPSGQQIPVTQIIATQLPSGQTHDSMVAHNQQQELATQQNPGNGNQGSVSTSQSSHQQVPNNRVEFIQHHNTDMVNHVGHHSQHSLQQQLMSNNRPDHANQQIQLTVSEDGIVTVVEPGSGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGHHQVIDSIINIEQATGEPANILVTQNPDGTTSIETSAADQLIVKDEKNVAKIESAQFAIPTDIKDIKGIDLKNVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNPEGQQQPKTISEVEVEPGTSAPISESDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAVELSRHGKCHLAGDPAERQTKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRIHTGESPHRCEFCEKTFTRKEHLINHLKQHTGDTPHACKICSKPFTRKEHLITHMRAHNCGERPFSCGECGKSFPLKGNLLFHERSHQKSGGGNRPFRCEVCSKDFICKGHLVSHQRIHASTGEAVANNEQQVTEGEQCGDKDTADRPERKHDIRATTDNRPPEEDVTQNQQSNPVMQMNNQVRTGSGSGAANVPTFNHPPNTQHHAGNPIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141834;
90% Identity: iTF_01402854; iTF_01115852; iTF_01494475; iTF_00180661; iTF_00249860; iTF_01176325; iTF_00197521; iTF_01495190;
80% Identity: -