Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01000870.1:1-13910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.3e-05 0.011 17.7 2.2 1 23 432 454 432 454 0.97

2 16 0.00057 0.09 14.9 0.6 1 20 460 479 460 482 0.94

3 16 1.9e-05 0.003 19.5 5.6 1 23 501 523 501 523 0.98

4 16 0.00017 0.027 16.5 4.7 1 23 529 551 529 551 0.99

5 16 3.4e-05 0.0053 18.7 5.3 1 23 557 579 557 579 0.97

6 16 1e-05 0.0016 20.3 7.3 1 23 585 607 585 607 0.97

7 16 8.8e-07 0.00014 23.7 2.7 1 23 613 635 613 635 0.97

8 16 9.2e-05 0.015 17.3 6.7 1 23 641 663 641 663 0.97

9 16 0.00013 0.021 16.9 6.5 1 23 669 691 669 691 0.97

10 16 4.4e-07 7e-05 24.6 1.9 1 23 697 719 697 719 0.98

11 16 4.5e-05 0.0071 18.3 7.9 1 23 725 747 725 747 0.98

12 16 2.2e-06 0.00035 22.4 5.8 1 23 753 775 753 775 0.98

13 16 4.1e-05 0.0065 18.4 6.2 1 23 781 803 781 803 0.97

14 16 2e-06 0.00031 22.6 3.2 1 23 809 831 809 831 0.96

15 16 0.00066 0.1 14.7 0.3 1 23 838 860 838 860 0.96

16 16 0.0022 0.34 13.0 4.5 1 23 870 892 870 892 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.3e-05	0.011	17.7	2.2	1	23	432	454	432	454	0.97
2	16	0.00057	0.09	14.9	0.6	1	20	460	479	460	482	0.94
3	16	1.9e-05	0.003	19.5	5.6	1	23	501	523	501	523	0.98
4	16	0.00017	0.027	16.5	4.7	1	23	529	551	529	551	0.99
5	16	3.4e-05	0.0053	18.7	5.3	1	23	557	579	557	579	0.97
6	16	1e-05	0.0016	20.3	7.3	1	23	585	607	585	607	0.97
7	16	8.8e-07	0.00014	23.7	2.7	1	23	613	635	613	635	0.97
8	16	9.2e-05	0.015	17.3	6.7	1	23	641	663	641	663	0.97
9	16	0.00013	0.021	16.9	6.5	1	23	669	691	669	691	0.97
10	16	4.4e-07	7e-05	24.6	1.9	1	23	697	719	697	719	0.98
11	16	4.5e-05	0.0071	18.3	7.9	1	23	725	747	725	747	0.98
12	16	2.2e-06	0.00035	22.4	5.8	1	23	753	775	753	775	0.98
13	16	4.1e-05	0.0065	18.4	6.2	1	23	781	803	781	803	0.97
14	16	2e-06	0.00031	22.6	3.2	1	23	809	831	809	831	0.96
15	16	0.00066	0.1	14.7	0.3	1	23	838	860	838	860	0.96
16	16	0.0022	0.34	13.0	4.5	1	23	870	892	870	892	0.99

Sequence Information

Coding Sequence: ATGAATCCTGAACACCACAATATCAATACGGGAGGTGGCCAACCTCCTGGTAACTCTGAGTCCCAAAATCAAAGAGTAACGTCTggtcaacaacaacaacaaccacccagtaatttaactccTACAACATCTGCTACCGACTTACGAGTTAATTCGGCAGCCGTTAATGTTGCTTTGTCCAGCGTCGCAAAGTATTGGGTATTTACAAATCTATTTCCCGGGCCAATTCCTCAAGTTTCTGTGTATGGGTTACCTTCCAATACAAGAATCGAAAACGGAAAACCTGTGCAGgaTCTTGGGCAGTCCCATTCAGGTCTTCTAAATGGAGATCCAAACGTTATACTTGGTCAACATGGTGGACAGTCACAACTGTCTGTGTCGGGACCTAGTGGCCAACAAATACCAGTCACTCAAATAATTGCAACACAATTACCTTCTGGACAGACACATGACTCTATGGTGGGTCACAATCAGCAACAAGATCTTGCTACTCAGCAAAATTCTGGCAATGGAAGTCAAACCTCTGTTAGTACTAGCCAGTCCTCTCATCAGCAGGTACCCAATAATCGGGTCGAGTTTTTACAACATCATAACAATGATATGGTAAATCATGTGGGTCACCACTCCCAACAGCATTCGCTTCAGCAGCAGTTAATGTCTAACAGTCGACCAGACCATGCTAATCAACagATACAACTTACAGTAAGTGAAGATGGAATTGTAACAGTGGTAGAACCTGGCAGTGGCAAACTTGTAGATAAGGAAGAACTACATGAAGCCATCAAAATGCCTTCTGATCACACTTTAACAGTTCATCAATTGCAGCAGATTGTTGGTCATCATCAGGTAATTGACAGTGTTATTCGTATTGAGCAGGCAACCGGAGAGCCGGCAAATATACTTGTCACACAGAATCCTGATGGGACCACTTCTATAGAAACGAGTGCATCGGAACAACTCATAGTTAAAGATGAGAAGAATGTTGCAAAAATTGAATCCGCCCAATTCGCAATACCCACAGACATTAAGGATATCAAGGGTATTGATTTAAAGAATGTTGGAGCAATGGGAATGGAAGGGGCTGTAGTTAAAATATCGGCCGGCGCCTCAGAGAATGACCTCCATGCAATGTACAAAGTTAATGTAGAGGACCTTTCACAGCTGCTGGCTTACCATGAAGTGTTTGGTAAACTAAATCCTGAGGGCCAACAGCAGCCTAAGGCTATAAGCGACGTGGACGTCGAACCTGGAACTAGTGCACCGATATCAGAATCTGATTCTTCACCGGGTCATCATTCCTGTGATATTTgtggaaaaatatttcaattccgTTACCAACTAATTGTTCATagGAGATACCATGGTGAGAGTAAGCCATACACTTGTCAAGTTTGTGGCACTGCATTTGCAAATGCTGTGGAGCTGTCTAGACATGGAAAGTGTCATTtagCTGGAGACCCTGCAGAGAGACAGGCCAAAAGATTAACCCAAGACAAACCATATGCGTGTACAACTTGCCACAAAACATTCTCTCGTAAGGAGCATTTGGACAACCATGTTCGAAGCCACACAGGAGAGACACCTTAtagGTGTCAGTTTTGTGCGAAAACATTCACCCGTAAAGAGCATATGGTGAACCATGTACGAAAGCACACCGGCGAGACCCCGCATCGATGCGACATCTGCAAAAAAAGCTTCACAAGAAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCATACAAACGATACACCGTTCCGATGCGAATTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGCGAGACGCCGCATCGTTGTGACTTCTGTTCGAAGACATTTACGCGCAAAGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGAGAGTCCCCGCACCGCTGCAGCTTCTGCTCCAAGTCTTTCACTAGGCGGGAGCACCTCGTCAACCACGTGCGTCAGCACACCGGCGAGACGCCCTTCCAATGCGGCTACTGCCCTAAAGCGTTCACTCGGAAAGACCACTTAGttaACCACGTCCGCCAACACACGGGCGAATCGCCCCACAAATGTTCGTTTTGTACGAAATCCTTCACGCGCAAGGAACATTTGACCAACCACGTACGTCAGCACACGGGCGAGTCGCCGCACCGCTGCACTTACTGCGCCAAGTCATTCACCAGGAAGGAGCATCTCACTAACCATATCAGAATTCACACCGGCGAGTCTCCGCATCGCTGCGAGTTTTGCGAGAAGACATTCACGAGGAAAGAGCATCTCATTAATCATTTGAAACAGCACACGGGGGATACTCCGCATGCTTGCAAAATTTGCTCGAAACCGTTTACAAGGAAGGAGCACCTTATAACGCACATGAGagcTCACAATTGCGGTGAACGCCCGTTCAGCTGTGGGGAGTGCGGCAAGTCATTCCCGTTAAAAGGAAACTTGCTGTTCCATGAAAGGTCGCATCAAAAAAGCGGCGGCGGGAACAGACCGTTTAGATGCGAAATTTGTTCCAAGGATTTCATTTGTAAagGGCATTTGGTGTCGCATCAACGTACTCATGCTCCCACGGGCGAGGCTGTCGCCAATAGTGAACAGCAGGTGGCTGAAGGCGAGCAATGCGACAAGGACTCCGCCGACCGCCCCGAACGAAAGCATGACATCAGagcAACTACTGATAATAGACCAACAGAAGAAAATGTCACCCAAAACCAGCAAAGCAACTCTGTTATGCAAATGAACAGTCAA
Protein Sequence: MNPEHHNINTGGGQPPGNSESQNQRVTSGQQQQQPPSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPSNTRIENGKPVQDLGQSHSGLLNGDPNVILGQHGGQSQLSVSGPSGQQIPVTQIIATQLPSGQTHDSMVGHNQQQDLATQQNSGNGSQTSVSTSQSSHQQVPNNRVEFLQHHNNDMVNHVGHHSQQHSLQQQLMSNSRPDHANQQIQLTVSEDGIVTVVEPGSGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGHHQVIDSVIRIEQATGEPANILVTQNPDGTTSIETSASEQLIVKDEKNVAKIESAQFAIPTDIKDIKGIDLKNVGAMGMEGAVVKISAGASENDLHAMYKVNVEDLSQLLAYHEVFGKLNPEGQQQPKAISDVDVEPGTSAPISESDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAVELSRHGKCHLAGDPAERQAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRIHTGESPHRCEFCEKTFTRKEHLINHLKQHTGDTPHACKICSKPFTRKEHLITHMRAHNCGERPFSCGECGKSFPLKGNLLFHERSHQKSGGGNRPFRCEICSKDFICKGHLVSHQRTHAPTGEAVANSEQQVAEGEQCDKDSADRPERKHDIRATTDNRPTEENVTQNQQSNSVMQMNSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141834;
90% Identity: iTF_01495928;
80% Identity: -