Basic Information

Gene Symbol
-
Assembly
GCA_029032895.1
Location
JARDWC010000425.1:3940107-3943022[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-08 1.2e-05 25.4 0.0 7 40 28 59 23 64 0.85

Sequence Information

Coding Sequence
ATGGAACAGTATATTCCATGTTCCATGTCCCACGTACGTTCATTTTTCAATGTGGTCCATAATTATGAAACAGTGATTCCTAATGCTTTGAAAGCTGTTGACACTGGTATTTCACTGAGAAAAGCTGCTGCAGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACCGAAGAACAAAAAATAGTTGACTGGATTCTTTTTAGAGCTCAGCGTGGTTTACCAGTAACTAAAACAGAGCTCTTGGATTCTATTCAACAATATGTGAAAAAGTCAAAAAAAGAAACTCCGTTTATTGATAGTCGGCCGAGCCGACATTGGTATGAGGGCTTTCGAAAACGACACCCTCAAATGTCAATCAGGAAGCCACAACATCTGACTCATAGTAGAGCAGCAGTGACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCTAAgtatttaactgaaaaaaaattaatggagaTTCCTTCTACGAGAATTTTCAACTGTGACGAGACTTATGTAAGTTTATGCCCTCCATCTGAAAAAGTATTGTTAGCTAAAGGATCCCGTTCTGCATATAAGGTGGTTGATTCTGATAAAGAAGGATTTactgtattgtttatgtatagtgCTAATGGTGATCGTGCACCTCCCATGATCATGTTTCCTTATAAAGAAGAAGTACCAGagaaaattgtcaaaaattGTCCTGAAGGTTGGGGTGTTGGGCTCTCAGATAATGGGTGGATGACCTCAGAGTCAttctatgaatatataacaaatatattttacccaTGGCTAGTGAAACAAGGAACTCAGTTTCCAATCGTGTTATATTTGGATAATCATTCATCACATATGACTATGCCTCTGGTTACATTTTGTCGTGAAAAGGGTATTGAGTTGATTGGACTTGTTCCCAACTCAACTCATATAATGCAACCACTtgacattagtttttttcaCCCATTTAAAGAGACATGGAAAAAATCTGTACCAAGATggaaaaattctaaaaatgtttcccgagtaaaaaaagaagattttcCATTAGTTCTAAAGTTTGCATTGGATGCTATGGCACAAGAAAAAAATGCTGTTATCAGTGGATTCAAAGCTGCAGGCTTGTATCCTTTCAATCCTTCTGCCGTTGACTATGATGTatttgataaaagaaagaaatctaAAACAACAGTAACTAAAGAAAATGTACAAGATGAAGTAACAGAAGATAAGGAAAAACATCTATTAACCTTCGAAACCAATTTATCAAAGGATATTCTGGAAGAATTTAATACTGCTTGGTTGAATCAGACATTGCCTAAGGATCTAGAAATTAGAGGCTTGTATAAATACTGGCTTGATGTCAGTGGAAAATCtgattttcttgACAGTACACCTGCTATTACAACTGCTTCTACAGCTGCTTGTACTACGCCAACTATTGACAAATATTCTGAGCTTCAAGAATGTCAAACGTTTAGTCAATCAGTTATTGGTAAAGAAAATGACTCTATATCTGCTAATAaaaTTGAAACCGATGCTGGGAATCCTTTTGACGACGCATTTAAGATGCCAACTAATTATTTACCGAAGAAAAAAGGATTAAACTGGAGTCATCCGGCAAACCCAAACTACCTTCTGCTGGTACATCTGATTAGTGGATGCAATATCActcaaaaaaagaaaatgatcggaaaataa
Protein Sequence
MEQYIPCSMSHVRSFFNVVHNYETVIPNALKAVDTGISLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQQYVKKSKKETPFIDSRPSRHWYEGFRKRHPQMSIRKPQHLTHSRAAVTGDDLKDWFDEQAKYLTEKKLMEIPSTRIFNCDETYVSLCPPSEKVLLAKGSRSAYKVVDSDKEGFTVLFMYSANGDRAPPMIMFPYKEEVPEKIVKNCPEGWGVGLSDNGWMTSESFYEYITNIFYPWLVKQGTQFPIVLYLDNHSSHMTMPLVTFCREKGIELIGLVPNSTHIMQPLDISFFHPFKETWKKSVPRWKNSKNVSRVKKEDFPLVLKFALDAMAQEKNAVISGFKAAGLYPFNPSAVDYDVFDKRKKSKTTVTKENVQDEVTEDKEKHLLTFETNLSKDILEEFNTAWLNQTLPKDLEIRGLYKYWLDVSGKSDFLDSTPAITTASTAACTTPTIDKYSELQECQTFSQSVIGKENDSISANKIETDAGNPFDDAFKMPTNYLPKKKGLNWSHPANPNYLLLVHLISGCNITQKKKMIGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01495724;
90% Identity
iTF_01495724;
80% Identity
-