Thel020166.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- rst2_1
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000033.1:3397722-3405504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0066 0.62 11.2 0.1 3 23 132 152 130 152 0.97 2 15 0.0022 0.21 12.7 2.9 1 23 269 291 269 291 0.98 3 15 7.9e-05 0.0075 17.3 1.2 1 23 297 320 297 320 0.96 4 15 0.017 1.6 9.9 5.8 1 23 325 348 325 348 0.90 5 15 9.4e-06 0.00089 20.2 0.4 2 23 511 532 510 532 0.98 6 15 0.00043 0.041 14.9 2.4 1 23 538 560 538 560 0.98 7 15 0.016 1.5 10.0 4.1 1 23 614 636 614 636 0.96 8 15 1.2 1.2e+02 4.1 0.0 2 23 644 665 643 665 0.91 9 15 0.0033 0.31 12.2 4.3 1 23 671 693 671 693 0.95 10 15 3.7e-06 0.00035 21.5 0.4 1 23 699 721 699 721 0.98 11 15 0.00088 0.083 14.0 2.5 1 23 730 752 730 752 0.98 12 15 0.0002 0.019 16.0 1.2 3 23 799 819 798 819 0.97 13 15 0.023 2.2 9.5 7.3 1 23 836 858 836 858 0.96 14 15 1.6e-06 0.00015 22.6 0.6 1 23 864 886 864 886 0.98 15 15 4.7e-07 4.4e-05 24.3 3.1 1 23 892 915 892 915 0.98
Sequence Information
- Coding Sequence
- atgaatttaaatattgttgtagAGTTAGATCCATTGGGAACATATGATTTCCCATCATATCCAAATTATACACCTCTGCTGATACCTATAGAATATCCAAACACGAATACAACATACCAGAACAATGTAAAAAATGAAGCATATCAATATCCAACAACATTGAATGGATTTAATACtgaaactaataatataaatgaaacaaaacctGTAGTTCCAGAAGAAACTactaatgtaaatgtaaatactagtaatgaacaaataatagaaaatcAAAATGGTGAGGACCCGACAccaacaaataaaacaattaaaaaagaatCTAAGAATGGGAAAGATAGGAAGAGCAATAATCTCTCAGAGAAGATTGCTGATAGCAATTTCCCATTCTACGGCTGTGCAGTGTGCAACATTAGCTTTAAGTTATTGACAGATTTAGATAAGCACATAGCAACACATAAAGATAGAATAACAAGTTACGGTTTGCGTTTGAAGAATCAATTGAAGCGGAAGAAGTTGCGGAAGGagcaaaaaaaattgaagaagtTAAAAAAGTCTATTAAGAAAGAGAAGGATTTGGAAATGAAAATTGAAATCAAACCAGAGGACGGCTACATTGGTAATATGAAAGTGGAGGACTATAAACAGGATTCCAAAGATGATGCTAAAGTGAACAATCTGGAACAAATAGTAGCAGATGCATCTGAGAAGAACGAAGAGGTTAATAAGAAAGAAGAGGTTAATAAGAAAGAAGAGGTTAATAAGAAAGATGAAGGTAAAGAGAAGGACTACAACTTAGAGAAGATGTTTAAGTGTTTCGCTTGTCAGAAACAGTTCACCTTAAGTTACTATCTTAAGTTACACGTTAGATCTCATACAGATGAGAAACCTTACACATGTGCGGAGTGCGGTCAATGTTTCATAACGGCAAGCAAGTTGGGACGGCACAATAAGAGAATACACCTAGCCATCAGGCATCAGTGCAGGATCTGCTACAAATTCTTCTCGAGATTTGAATACCTCACCAAGCACTTTGACAACAAGCATCCGGAGGATAAGTTGGAAGGGGAACCGTACgATTACAACGCAATCCTGCCGTACCTTAATGAGTTGGAGGAGCAGATAAAGACTAAAGTAGAAGAGGAGAATGAGAATGAGAATGAGAACGAGAACGAGAACGAGAAGGAAGTTAAAACCAATGAGGAGAACCTGTGGGACGACTGGCCAGTGGAACAGCCCCACATCAGCTACATCGCTGAACCGATTCAGGTTGGGGACGAGCCCCTAATAGACATCCAGGCTGGCGATGATGGTTCCATTCACGAGCTGGTTGTGACTAAGGAGCTGGATGTAGACGTGAAGGACGAGGTGGAGTTGAACGGATATATATCGGACAATGATAATAAGGAATGTGTGAAGAATGACAGCTGCTCGGACAGCGACTACTTCCCGTCGAACACTTGGGCGTCGTCGCCGCAGCCGATGGAGGAGCCGGCGCCGCAGCTCAAGCGCCCGAAGTCTGACCGGCCGATCAAGTGCGAGGTCTGCGAGAAGGAGATCAGGTCGCAGTCGTACCTCCAGATACACATGAGGACCCACACCGGGGAGAGGCCGTTCAAATGTTACATCTGCAGCAGGGGCTTCATCACGGCGAGCAAGATGCACCGTCACGTCCTCACCCATGCAGACGTTCAAGATGACAAGACTTCTGTCAGAAGTGAGATGATGGTCTCCGTATCCGGTTCTGATGTCGCCAAGAAGAGAAGGAGAAGAAGTAAagaATCGGTGAAGAAGAAGACCAAAGCAAAAAAAACTGACAAGACCCGCCAACAGAAGAGGCCGCATGCCTGCGAGTACTGCCAGAAGCGGTTCCTCCACCTGGCCACCCTGCAGGTCCACAAACGGTCGCACGAGGGCGAGGAGCTGGTGCTCAAGTGCAACTACTGCCTGCTGAGGATCGACGACGCAGAAGCGCTGAGGGTGCATGAGGCCGGACACGAGGGGCCGAAGCCCTACCTCTGCACCATATGCGGGAAGAGTTACAAGAAAAGGGAGACCATGATGTACCACAGGAAGCACCACAGCGCCGACAAGGAGTTCACTTGCGACATCTGCTCCAAGGGCTTCCCGACATCGAGGAAGCTGGAGAAGCACATTGCCACGCACCGCACGGACCGGTACGTGGTGCGGTACGAGTGCCCGGTCTGCGCTCATATGTTCAACACCAAGTACCACATCAAGATGCACCTGGCGACGCACCAGAAGGAGGGCCTGATAGTGGAGGAGAATCGGAACGAGATTCTCGCCATGGTGCTCCAGAACGCGCGCAGGATACCAAAGCACCCGGACGCCGCCGGCATCACGGACAAAGTGCCGCAGGACGAACAGAGCCGCATGTGCAACATATGCGGGCAGGTCTTCCAGCACTTCTACTATTTGGAGGAGCACCTCAAGAGTCACGGCTCCAAAATAGCGCTGGAGGACGACGACAGGACCGAGGAGAAGAAGCACACGTGCCAAGTCTGCAATAAGAGTTTCAAGCTGCACTACTACCTCAAACTTCACAGCTTCACTCACACGAAGGAGAAGCCTTACATCTGCCAGCAGTGCGGCAAGGGCTTCATAACCCGGGGCAAGCTGAAGAGGCACCTGGAGACCCACACGGGGCTGAAGAAGTACCAGTGTCATATCTGCTACAAGTTCTTCACGAGACCTAGTTACCTCAGAATCCATGTGCGGACTATTCACGGCACCCAAGATTATAACTTCACATTGGATAAGCAGTTCGGAGTGAGCAGTTTGACCGGTGTGCGGCAGACAGTTTAG
- Protein Sequence
- MNLNIVVELDPLGTYDFPSYPNYTPLLIPIEYPNTNTTYQNNVKNEAYQYPTTLNGFNTETNNINETKPVVPEETTNVNVNTSNEQIIENQNGEDPTPTNKTIKKESKNGKDRKSNNLSEKIADSNFPFYGCAVCNISFKLLTDLDKHIATHKDRITSYGLRLKNQLKRKKLRKEQKKLKKLKKSIKKEKDLEMKIEIKPEDGYIGNMKVEDYKQDSKDDAKVNNLEQIVADASEKNEEVNKKEEVNKKEEVNKKDEGKEKDYNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKFFSRFEYLTKHFDNKHPEDKLEGEPYDYNAILPYLNELEEQIKTKVEEENENENENENENEKEVKTNEENLWDDWPVEQPHISYIAEPIQVGDEPLIDIQAGDDGSIHELVVTKELDVDVKDEVELNGYISDNDNKECVKNDSCSDSDYFPSNTWASSPQPMEEPAPQLKRPKSDRPIKCEVCEKEIRSQSYLQIHMRTHTGERPFKCYICSRGFITASKMHRHVLTHADVQDDKTSVRSEMMVSVSGSDVAKKRRRRSKESVKKKTKAKKTDKTRQQKRPHACEYCQKRFLHLATLQVHKRSHEGEELVLKCNYCLLRIDDAEALRVHEAGHEGPKPYLCTICGKSYKKRETMMYHRKHHSADKEFTCDICSKGFPTSRKLEKHIATHRTDRYVVRYECPVCAHMFNTKYHIKMHLATHQKEGLIVEENRNEILAMVLQNARRIPKHPDAAGITDKVPQDEQSRMCNICGQVFQHFYYLEEHLKSHGSKIALEDDDRTEEKKHTCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFTLDKQFGVSSLTGVRQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115857;
- 90% Identity
- iTF_01495937; iTF_01115857; iTF_01494482;
- 80% Identity
- -