Thel010994.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000014.1:9912731-9918730[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-12 1.3e-08 35.0 0.0 1 40 58 95 58 100 0.89 2 2 8.2 1.5e+04 -3.6 0.1 16 21 172 177 172 177 0.90
Sequence Information
- Coding Sequence
- ATGGCGGGCAAATTGCGCGGCTTCCGGTCCGCTTCCACGGAACCCTCCCGACTGTTGTGCGGCGCACACGCACTTAACTCCCCCGGTTCCAAGGCTCCAAAAACGGCTGTTGTCTTAGTTAATACGTGTAAGaaggtttcaaaaaaaaataaatctacgcGTATAAATTATTCTCCTGATGATTTAGCTAATGCTTTGAAAGCTGTTGACACTGGTATTTCACTGAGAAAAGCTGCTGCAGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACCGAAGAACAAAAAATAGTTGACTGGATTCTTTTTAGAGCTCAGCGTGGTTTACCAGTAACTAAAACAGAGCTCTTGGATTCTATTCAACAATATGTGAAAAAGTCAAAAAAAGAAACTCCGTTTATTGATAGTCGGCCGAGCCGACATTGGTATGAGGGCTTTCGAAAACGACACCCTCAAATGTCAATCAGGAAGCCACAACATCTGACTCATAGTAGAGCAGCAGTGACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCTAAgtatttaactgaaaaaaaattaatggagaTTCCTTCTACGAGAATTTTCAACTGTGACGAGACTTATGTAAGTTTATGCCCTCCATCTGAAAAAGTATTGTTAGCTAAAGGATCCCGTTCTGCATATAAAGTGGTTGATTCTGATAAAGAAGGATTTactgtattgtttatgtatagtgCTAATGGTGATCGTGCACCTCCCATGATCATGTTTCCTTATAAAGAAGAAGTACCAGAGAAAATTGTCAAAATTGTCCTGAAGGTTGGGGTGTTGGGCTCTCAGATAATGGGTGGATGA
- Protein Sequence
- MAGKLRGFRSASTEPSRLLCGAHALNSPGSKAPKTAVVLVNTCKKVSKKNKSTRINYSPDDLANALKAVDTGISLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQQYVKKSKKETPFIDSRPSRHWYEGFRKRHPQMSIRKPQHLTHSRAAVTGDDLKDWFDEQAKYLTEKKLMEIPSTRIFNCDETYVSLCPPSEKVLLAKGSRSAYKVVDSDKEGFTVLFMYSANGDRAPPMIMFPYKEEVPEKIVKIVLKVGVLGSQIMGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004159;
- 90% Identity
- -
- 80% Identity
- -