Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067296.1:2142863-2155025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00011 0.01 16.9 2.5 1 23 230 252 230 252 0.99

2 10 0.1 9.8 7.5 0.1 1 23 259 282 259 282 0.94

3 10 5.5e-05 0.0052 17.8 1.1 1 23 313 336 313 336 0.98

4 10 0.082 7.9 7.8 1.4 1 23 339 362 339 362 0.96

5 10 3.6 3.5e+02 2.6 0.4 2 22 379 399 379 403 0.85

6 10 0.022 2.1 9.6 0.6 2 23 455 477 454 477 0.95

7 10 0.0016 0.15 13.2 2.9 2 23 487 508 486 508 0.97

8 10 0.021 2 9.7 0.1 3 23 516 536 514 536 0.97

9 10 1.5e-05 0.0015 19.5 3.9 1 23 542 564 542 564 0.98

10 10 1e-05 0.00095 20.1 3.1 1 23 570 593 570 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00011	0.01	16.9	2.5	1	23	230	252	230	252	0.99
2	10	0.1	9.8	7.5	0.1	1	23	259	282	259	282	0.94
3	10	5.5e-05	0.0052	17.8	1.1	1	23	313	336	313	336	0.98
4	10	0.082	7.9	7.8	1.4	1	23	339	362	339	362	0.96
5	10	3.6	3.5e+02	2.6	0.4	2	22	379	399	379	403	0.85
6	10	0.022	2.1	9.6	0.6	2	23	455	477	454	477	0.95
7	10	0.0016	0.15	13.2	2.9	2	23	487	508	486	508	0.97
8	10	0.021	2	9.7	0.1	3	23	516	536	514	536	0.97
9	10	1.5e-05	0.0015	19.5	3.9	1	23	542	564	542	564	0.98
10	10	1e-05	0.00095	20.1	3.1	1	23	570	593	570	593	0.97

Sequence Information

Coding Sequence: ATGTCCAACGACATTTGtagaatttgtttaaatatgaaCGTGCGTATGTTTACATTGAAAAATACTATTCTTCAAAATTTATACGAATTACTAATGGGAGGATACGACGGTTGCATGAATGGAGACAGCGAGTCAGTGATGGCCTGTTTCATGTGCTTTGCAAGATTGAAAAGATGCTCTCATCTACAGCAACAAGCTATCAAATCTAACGAGATCCTCCATCAGCTGGTTAGAGGTGGAACGTTTGTACCAACACCTCAAACGCCGAGCAATACATTGGTCACCGGTCAGACATACCAGACCACGCCCGTCTACCATCTCCATCTGGATCCAGTTCATGAAGTTGAAGTGGAGATCGACTGTAAAACTGAAGACATTATTTATCCGTTGGATTCTAAAGAGGATGaaaatggtgatgatgaggTGGCAGGACAAGATTCACCAGTTGACACAGAATTTATGAGAACCCATCAAGATGGACAGTCAGACTCTGATGACGACCTACCTCTCATTGCTATTGGTTCGCACCCTAAAAAGAAAAAAGCTGCTACCAATGCAAAGAAACAGCGGAAAGATAAAAATGAGGATGATTTCAAAGTGGACGCAAAAGAGATTGAGTTGACGGAGGACGAACAACGGTTGGAACTGCTGAGCAGGGCCAGCTCGGAGAACTATTTGAACTCACCGTACAAATGTGAGAAGTGTTACAAGGGCTTCGTCCATCCGCAGGCGTTCAGCAATCACATGGAGAAGCACGACCAGAGTAGTGGCCCTCACGAGTGCGGCGTGTGCCGGCTGCGCTACGGCGGCGCGCGGCAGCTGCGCGCTCACGTCGCGTCAGCGCATGCGCGCAGGTACGCCTGCGTCAAGTGCCCCCACCGCTCTCACACCAGGCACCAGGCGAGGGACCACGAGAAGTGGCACAACGGCCACACGTATCCATGCCAGGTCTGCGGGCAGAAGTTCCAGAAACCCACTTCGTACCTGACCCACATGCGCAAGAACCACTCGGAGCATGTGTGCGAGCGATGCGGTGATAGCTTCGTGGGTAGACACGGTCTTCTCATGCACCTCAGCAAGACCCACAAGCGGGACGAACCGCAAGACAACCCGGAGGAGAGTGCAATGGAGAGGTATTGCAGCGATTGCAACATTCAGTTCCTGACTGTCAACGCTTGGAAGAAACATGTCCTCACTTCCTTCAAACACACAGACAAACATGGAAGCAGTTCGCTCTGCGATATATGCGGGGAAGAAGTGTCGCCATTAAGCAGAGGTGCTCATGTGCGTCAGCACATGCGTGAGCTACGCCCACAACTATCTGCCACGCCCACTGTCACGCCCACGGCCACTCCCGCTCTTCACTGTGGACAGTGCGAGGCCTTATTCGTGACGCGGTCCCGTCTCCAGGCCCACGTGAAGAGGGTCCACATGGGTTTGAAATACAATAAGAACGTGGTCTGCGAGATGTGCGGTAAGAAGTGTACGTCAGCGGCGGCGCTGCGCTGCCATCAGCGGCGTCACACTGGTGAGAGGCCGTACGGCTGCGCGCAGTGCCCGGCGCGATTCGCGGAGCGCGGCCGGCTGCGCgtgcacgcgcgcacacactcAGGCGAGCGCCCGTACGCTTGCCACGCGTGCCACAAGCGCTTCAGCCAGAAACCAGCTCTCAACAGGCATTACAGGGTGCACTCCGGCGCGAAGCCGTATGCCTGCACACAGTGCACCAAGTGCTTCAGCCAATCCAACTCGCTCAAGCTGCACGCGCGCACCGTGCATCAGAAGTTGCCGCACGCCAGAAGGCGCGACAAAGCCGGACCCCAGTCTGATACCGGAtag
Protein Sequence: MSNDICRICLNMNVRMFTLKNTILQNLYELLMGGYDGCMNGDSESVMACFMCFARLKRCSHLQQQAIKSNEILHQLVRGGTFVPTPQTPSNTLVTGQTYQTTPVYHLHLDPVHEVEVEIDCKTEDIIYPLDSKEDENGDDEVAGQDSPVDTEFMRTHQDGQSDSDDDLPLIAIGSHPKKKKAATNAKKQRKDKNEDDFKVDAKEIELTEDEQRLELLSRASSENYLNSPYKCEKCYKGFVHPQAFSNHMEKHDQSSGPHECGVCRLRYGGARQLRAHVASAHARRYACVKCPHRSHTRHQARDHEKWHNGHTYPCQVCGQKFQKPTSYLTHMRKNHSEHVCERCGDSFVGRHGLLMHLSKTHKRDEPQDNPEESAMERYCSDCNIQFLTVNAWKKHVLTSFKHTDKHGSSSLCDICGEEVSPLSRGAHVRQHMRELRPQLSATPTVTPTATPALHCGQCEALFVTRSRLQAHVKRVHMGLKYNKNVVCEMCGKKCTSAAALRCHQRRHTGERPYGCAQCPARFAERGRLRVHARTHSGERPYACHACHKRFSQKPALNRHYRVHSGAKPYACTQCTKCFSQSNSLKLHARTVHQKLPHARRRDKAGPQSDTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115997; iTF_01496079; iTF_01495334;
90% Identity: iTF_01496079; iTF_01495334; iTF_01115997;
80% Identity: -