Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: -
Assembly: GCA_029030555.1
Location: JARDVY010000189.1:175052-189130[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00011 0.0098 16.9 2.5 1 23 232 254 232 254 0.99

2 11 0.1 9.4 7.5 0.1 1 23 261 284 261 284 0.94

3 11 5.6e-05 0.005 17.8 1.1 1 23 315 338 315 338 0.98

4 11 0.084 7.6 7.8 1.4 1 23 341 364 341 364 0.96

5 11 3.7 3.3e+02 2.6 0.4 2 22 381 401 381 405 0.85

6 11 7.4 6.7e+02 1.7 0.7 2 10 414 422 413 437 0.67

7 11 0.023 2 9.6 0.6 2 23 457 479 456 479 0.95

8 11 0.0016 0.14 13.2 2.9 2 23 489 510 488 510 0.97

9 11 0.021 1.9 9.7 0.1 3 23 518 538 516 538 0.97

10 11 1.6e-05 0.0014 19.5 3.9 1 23 544 566 544 566 0.98

11 11 1e-05 0.00092 20.1 3.1 1 23 572 595 572 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00011	0.0098	16.9	2.5	1	23	232	254	232	254	0.99
2	11	0.1	9.4	7.5	0.1	1	23	261	284	261	284	0.94
3	11	5.6e-05	0.005	17.8	1.1	1	23	315	338	315	338	0.98
4	11	0.084	7.6	7.8	1.4	1	23	341	364	341	364	0.96
5	11	3.7	3.3e+02	2.6	0.4	2	22	381	401	381	405	0.85
6	11	7.4	6.7e+02	1.7	0.7	2	10	414	422	413	437	0.67
7	11	0.023	2	9.6	0.6	2	23	457	479	456	479	0.95
8	11	0.0016	0.14	13.2	2.9	2	23	489	510	488	510	0.97
9	11	0.021	1.9	9.7	0.1	3	23	518	538	516	538	0.97
10	11	1.6e-05	0.0014	19.5	3.9	1	23	544	566	544	566	0.98
11	11	1e-05	0.00092	20.1	3.1	1	23	572	595	572	595	0.97

Sequence Information

Coding Sequence: ATGTCCAACGACATTTGtagaatttgtttaaatatgaatGTGCGTATGTTTACTTTGAAAAATACTGTTCTTCAAAATTTATACGAATTACTAATGGGAGGATACGACGGTTGTATGAATGGTGACGGTGAGCCAGTGATGGCCTGTTTCATGTGCTTTGCAAGATTAAAAAGATGCTCTCATCTACAGCAACAGGCTATCAAATCCAATGAGATCCTCCATCAGCTGGTTAGAGGTGGAACGTTTGTACAAACTTCTCAAACTCCGAACAATACATTGGTCACTGGTCAGACATACCAGACCACACCCATCTACCATCTCCATCTGGATCCAGTTCATGAAGTTGAAATGGAGATTGACTGTAAAACTGAAGACATTATTTTTCGAACGGCTCCTAAGGAAGAGGATGAAAACGATGACGATGAGGTGCCGGGAGCACAAGGTTCACCAGTTAACACAGAATTTATGAGGACCCTTCAAGGTGAACAATCAGATTCTGATGATGACCTACCTCTCATTGCTATTGGTTCGAAcgctaaaaagaaaaaagctgCAACCAATGCAAAGAAACAGCGGAAGGATAAAAATGAGGATGATTTCAAAGTGGACGCAAAAGAGATTGAGTTGACGGAGGAGGAGCAACGGCTGGAACTACTTAGTAGGGCCAGCTCGGAGAACTATTTGAACTCGCCATACAAATGTGAGAAGTGTTACAAGGGCTTCGTCCATCCGCAGGCGTTCAGCAACCACATGGAGAAGCACGACCAGAGTAGTGGGCCGCACGAGTGCGGCGTGTGTCGGCTGCGCTACGGCGGCGCGCGGCAGCTGCGCGCGCATGTCGCGTCGGCGCATGCGCGTAGGTACGCCTGCGTCAAGTGTCCGCACCGCTCGCACACCAGGCACCAGGCGAGGGACCACGAGAAATGGCACAACGGTCACACGTATCCATGTCAGGTCTGCGGGCAGAAGTTCCAGAAGCCCACTTCGTACCTGACGCACATGCGCAAGAACCACTCGGAGCACGTGTGCGAGCGATGCGGTGACAGCTTCGTGGGGAGACACGGCCTGCTCATGCACCTCAGCAAGACCCACAAGCGGGACGAACCGCCAGACAACCCGGGGGAGAGTGCAATGGAGAGGTACTGCAGCGATTGCAACATTCAGTTCCTGACGGTCAACGCTTGGAAGAAACATGTCCTCACTTCCTTCAAGCACACAGACAAACACGGAAGCGGttCGCGCTGCGATATATGTGGAGAGGAAGTGTCGCCATTAAGTAGAGGTGCTCATGTGCGTCAGCATATGCGCGAGCTACAACCTCAACCGTCAGCCACGCCCACTGTCACGCCCACGGCCACGCCCACTCTTCACTGTGGACAGTGCGAGGCCCTATTCGTGACCAGGTCCCGTCTCCAGGCCCACGTGAAAAGGGTCCATATGGGTTTGAAATACAACAAGAATGTGGTCTGCGAGATGTGCGGTAAGAAGTGCACGTCGGCGGCGGCGCTGCGCTGCCATCAGCGTCGTCACACCGGCGAGAGGCCGTACGGTTGCGCGCAGTGCCCGGCGCGGTTCGCGGAGCGCGGCCGGCTGCGCGTGCATGCGCGCACGCACTCGGGCGAGCGCCCGTACGCCTGCCACGCGTGCCACAAGCGCTTCAGCCAGAAACCAGCTCTCAACCGGCACTACAGGGTGCACTCGGGCGTGAAGCCGTATGCCTGCACGCAGTGCACCAAGTGTTTCAGCCAATCCAACTCGCTCAAGCTGCACGCGCGCACCGTACACCAGAAGCTGCCGCACGCCAGGAGGCGCGACAAACCCGCACCCCAGTCTAATACCggataa
Protein Sequence: MSNDICRICLNMNVRMFTLKNTVLQNLYELLMGGYDGCMNGDGEPVMACFMCFARLKRCSHLQQQAIKSNEILHQLVRGGTFVQTSQTPNNTLVTGQTYQTTPIYHLHLDPVHEVEMEIDCKTEDIIFRTAPKEEDENDDDEVPGAQGSPVNTEFMRTLQGEQSDSDDDLPLIAIGSNAKKKKAATNAKKQRKDKNEDDFKVDAKEIELTEEEQRLELLSRASSENYLNSPYKCEKCYKGFVHPQAFSNHMEKHDQSSGPHECGVCRLRYGGARQLRAHVASAHARRYACVKCPHRSHTRHQARDHEKWHNGHTYPCQVCGQKFQKPTSYLTHMRKNHSEHVCERCGDSFVGRHGLLMHLSKTHKRDEPPDNPGESAMERYCSDCNIQFLTVNAWKKHVLTSFKHTDKHGSGSRCDICGEEVSPLSRGAHVRQHMRELQPQPSATPTVTPTATPTLHCGQCEALFVTRSRLQAHVKRVHMGLKYNKNVVCEMCGKKCTSAAALRCHQRRHTGERPYGCAQCPARFAERGRLRVHARTHSGERPYACHACHKRFSQKPALNRHYRVHSGVKPYACTQCTKCFSQSNSLKLHARTVHQKLPHARRRDKPAPQSNTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01494623;
90% Identity: iTF_01494623;
80% Identity: -