Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067270.1:6494128-6502790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00036 0.034 15.2 0.2 2 23 140 161 139 161 0.93

2 10 0.00052 0.049 14.7 2.4 1 23 167 189 167 189 0.96

3 10 6.3e-05 0.006 17.6 0.3 1 23 281 303 281 303 0.98

4 10 0.0027 0.26 12.4 0.0 3 23 378 399 376 399 0.90

5 10 0.002 0.2 12.8 0.2 1 23 414 436 414 436 0.93

6 10 8.4e-06 0.00081 20.3 0.2 1 23 464 486 464 486 0.98

7 10 0.00055 0.053 14.6 0.2 1 23 492 514 492 514 0.97

8 10 0.00031 0.03 15.4 0.3 1 23 520 542 520 543 0.95

9 10 0.012 1.2 10.4 1.1 1 23 556 578 556 578 0.96

10 10 0.004 0.39 11.9 0.1 1 20 746 765 746 768 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00036	0.034	15.2	0.2	2	23	140	161	139	161	0.93
2	10	0.00052	0.049	14.7	2.4	1	23	167	189	167	189	0.96
3	10	6.3e-05	0.006	17.6	0.3	1	23	281	303	281	303	0.98
4	10	0.0027	0.26	12.4	0.0	3	23	378	399	376	399	0.90
5	10	0.002	0.2	12.8	0.2	1	23	414	436	414	436	0.93
6	10	8.4e-06	0.00081	20.3	0.2	1	23	464	486	464	486	0.98
7	10	0.00055	0.053	14.6	0.2	1	23	492	514	492	514	0.97
8	10	0.00031	0.03	15.4	0.3	1	23	520	542	520	543	0.95
9	10	0.012	1.2	10.4	1.1	1	23	556	578	556	578	0.96
10	10	0.004	0.39	11.9	0.1	1	20	746	765	746	768	0.93

Sequence Information

Coding Sequence: ATGGAATCATCTGGAGTAGATTTCAACCTCCATTGGGAGGAGGTTGTAATCAAGaATTCTCCTAAACATGAAAATCAAGGAATATGTGATCTTGAAGATGTACAAGCTGTATCATATGCTACAATTACCTCTGAAGAAATGATTCATGACACTGATCAAATGGCCGCAGAAAATCTAATGTATTTATCCCAAGATGTAGTGGGTTATACTGAAACAAATGAATTGGCTGATGACTTGAATGTTGAATGTGTAACTGAAGAAGTCATTACAGATGACTGGGTCCTAGCTGGAGGTCAGGAAAGAGTGGAGGTCCCATTAGAACAGTTGGTGACCCCTGTGTCtgatattaaaattgaaaatgacATTGATGTTCCTTTGCCAACTGATCAAGATGAGTACACGGCGATGCGTCCATGGCCGTGTGACTTTTGCTCCCGTCGGTTTCGCAAGAAGGCTGCGCTCATGAATCATATGGTGGCACACCAAAACGATCGGCCGCACGCGTGCAACTTATGCGGCGTGCGATACGTGCGCAAGTGCGACCTTATGAACCACCTTAAGGTGCACGCGTTCGTACCGGAACATACCGACTCACTTGATTATGATGATGTTTTGACTGACGACACTCAATTATTGAAACCAAGGAAAAAAAGGGGTAGACGGAAAAAAAACCCGGAACCGGCCGAGAATGGCGTTTGGGAAAATATGACGTCCGCCCGTACACAACAATGGCAGCGTCGCGCACGGACGCCAGCGCCACGCTCACCGTCACCGCCTTCAGAGCCAGAGCCACCTCCTGCACCGCCTACTCCACCGCCTCCTACAGACCCGTCTCGACCATTTGTTTGCAGGCATTGCGGTGTTGGATTCGCAAGGGAAAAGGCGTTGCAATCCCACGCTAGGATCCACGGGGGTGACTCACCTGTAGAGTGTGGAGAGTGCGGTGAGCTGTGCTGGTCCCGCGAAGCGCTCAGCATCCACGCTGCACAGAGGCATCCGCACGTCGCGCCGCGCACACACCGCGAGCCTTCGTACGAGTCAAACTCTGATGGCGACCTAGATTTCCAGATGTCGCCGGTAACACAGGGTGAGCGCGGCGTATATGACAACGTTCGTGGCCCCGAGTTGTTCTGTCAAGATTGTGGCGTTGCTTTCCAACGAGTAGATTTACTCCGACGCCATGTTGCAGCAGCACATAGCTATAAACGCCACGATAGTACGAGCAGCACATGGGGAGAGCATACGTGCGATGTGTGCGGGGAGAGTTGTACGGACGCGTTACAGCTGCTGGCGCACGCTGAGGGGCATGCGGAGAGGCATCGCCCCAACAATAGACTAAAGAAAATGAGTCGTGGAAGAAACAATACGTCAGGAAGTAGTACAAGACAATTTCCGTGCAGAGAGTGTGGTAAGGTGTTCGGATCACGTAGTTCACAACAGATCCACATTAGAATCCATACCGGCGAGCGCCCGTATGCTTGTCGATTTTGCTGGAAGGCCTTCGCTGATGGAGGAACCTTGCGGAAGCATGAGCGGATACACACTGGAGAGAAACCGTACGCATGCGCAGTGTGTCCGCGTGCGTTTAACCAACGAGTGGTCCTGCGTGAACACGTGCGCTCACATCACTCGGCACCAGATCGCCGCGCCAAcggtgGAAATTCGTATTGTTGCGTAGTATGCGGTCGGAGTCTACATTCCAGTGTAGAGTTAGTACAACATTTGATTCAACATTGTGATGCAAACACCGCTCTGAAACGCCAGCCACAGAGCGGTCCCCGAAAATACAAACGCCGACGAAAATTAAAAACGGAAATACCATCACCGAAGCGAGAATGGGAAGAGGAGCCGGAACGAGGTTCGTCGCCGTCAGGCGCCTCCAATGTGTCGCCCACGTCGCCTGTCCGCTGCAACCCAGCACCGCTTCGTCGTAATACGTCACCACCTCGACGCAACATTTCGCCTCCTCggcgccggcggcggcgcgtgcaGCCGCCGCCCCCACGACCCCGTATGATACATACCGAGGAGCGCAAACCTAAAACTAAACAGGTACGTGGTCGCCGGGCACAGGGGCATCCTGCGGACGATCTTCGCGCTATAGTTCCTCGATCCCCGTCGCCGGTGCCACCCACACCTCCACCGGCATCCCCTCCCTCTGCCTGTACAGCCCCGTCTCCGTGCTCGTCACCAACCCCGCTATCTCCGATATCAGGGCATTCTTCGACCGGTCCCTACAAATGCGAAATGTGCTCAATGGAGTTTCCTCGCCGCGACGCGCTGCTGCTTCACGTACCCGTACACATCTGA
Protein Sequence: MESSGVDFNLHWEEVVIKNSPKHENQGICDLEDVQAVSYATITSEEMIHDTDQMAAENLMYLSQDVVGYTETNELADDLNVECVTEEVITDDWVLAGGQERVEVPLEQLVTPVSDIKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPEHTDSLDYDDVLTDDTQLLKPRKKRGRRKKNPEPAENGVWENMTSARTQQWQRRARTPAPRSPSPPSEPEPPPAPPTPPPPTDPSRPFVCRHCGVGFAREKALQSHARIHGGDSPVECGECGELCWSREALSIHAAQRHPHVAPRTHREPSYESNSDGDLDFQMSPVTQGERGVYDNVRGPELFCQDCGVAFQRVDLLRRHVAAAHSYKRHDSTSSTWGEHTCDVCGESCTDALQLLAHAEGHAERHRPNNRLKKMSRGRNNTSGSSTRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGNSYCCVVCGRSLHSSVELVQHLIQHCDANTALKRQPQSGPRKYKRRRKLKTEIPSPKREWEEEPERGSSPSGASNVSPTSPVRCNPAPLRRNTSPPRRNISPPRRRRRRVQPPPPRPRMIHTEERKPKTKQVRGRRAQGHPADDLRAIVPRSPSPVPPTPPPASPPSACTAPSPCSSPTPLSPISGHSSTGPYKCEMCSMEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958137;
90% Identity: iTF_01115882;
80% Identity: -