Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: -
Assembly: GCA_029030555.1
Location: JARDVY010000041.1:4636705-4646091[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00036 0.033 15.2 0.2 2 23 140 161 139 161 0.93

2 10 0.00052 0.047 14.7 2.4 1 23 167 189 167 189 0.96

3 10 6.4e-05 0.0058 17.6 0.3 1 23 281 303 281 303 0.98

4 10 0.0028 0.25 12.4 0.0 3 23 379 400 377 400 0.90

5 10 0.0021 0.19 12.8 0.2 1 23 415 437 415 437 0.93

6 10 8.6e-06 0.00077 20.3 0.2 1 23 465 487 465 487 0.98

7 10 0.00056 0.051 14.6 0.2 1 23 493 515 493 515 0.97

8 10 0.00032 0.029 15.4 0.3 1 23 521 543 521 544 0.95

9 10 0.013 1.1 10.4 1.1 1 23 557 579 557 579 0.96

10 10 0.0056 0.5 11.5 0.1 1 20 747 766 747 769 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00036	0.033	15.2	0.2	2	23	140	161	139	161	0.93
2	10	0.00052	0.047	14.7	2.4	1	23	167	189	167	189	0.96
3	10	6.4e-05	0.0058	17.6	0.3	1	23	281	303	281	303	0.98
4	10	0.0028	0.25	12.4	0.0	3	23	379	400	377	400	0.90
5	10	0.0021	0.19	12.8	0.2	1	23	415	437	415	437	0.93
6	10	8.6e-06	0.00077	20.3	0.2	1	23	465	487	465	487	0.98
7	10	0.00056	0.051	14.6	0.2	1	23	493	515	493	515	0.97
8	10	0.00032	0.029	15.4	0.3	1	23	521	543	521	544	0.95
9	10	0.013	1.1	10.4	1.1	1	23	557	579	557	579	0.96
10	10	0.0056	0.5	11.5	0.1	1	20	747	766	747	769	0.93

Sequence Information

Coding Sequence: ATGGAATCAACTGGAGTAGATTTCAACCTCCATTGGGAGGAGGTTGTAATTAAGAATTCTCCTAAACATGAAAATCAAGAAATATGCAATCTCGAAGGTGTACAAACTGTATCTTATGCTACAATTACCTCTGAAGAAATGATTGCTGATACTGATCAAATGGCCGcagaaaatttaatgtatttatccCAAGATGTAGTGGGTTATACTGAAACAACAGAATTAGCCGATGATTTGAATGTTGAATGTGTAACTGAAGAAGTCATTACAGATGACTGGGTCCTAGCTGGAGGTCAGGAAAGagTGGAGGTCCCATTAGAACAGTTGGTAACCCCTGTATCTGATGTTAAGATTGAAAATGACATTGATGTTCCTTTGCCAACTGATCAAGATGAGTACACGGCGATGCGTCCATGGCCGTGTGACTTTTGCTCCCGTCGGTTTCGTAAGAAGGCTGCGCTCATGAATCATATGGTAGCACACCAGAACGACCGGCCGCACGCGTGCAATTTGTGCGGTGTGCGATACGTGCGCAAGTGCGACCTCATGAATCACCTCAAGGTGCACGCATTCGTACCGGAACACACCGACTCACTTGATTATGatgATGTTTTGACTGACGATACTCAATTATTGAaaccaaagaaaaaaaggggtcgacgaaaaaaaaacacggaACCGGCCGAGAATGGCGTTTGGGAAAATATGACGTCCGCCCGTACACAACAGTGGCAGCGTCGCGCACGGACGCCAGCGCCACGCTCGCCGTCACCGCCTTCGGAGCCAGAGCCACCACCTGCGCCGCCTACCCCACCGCCTCCTACAGACCCCTCTCGACCCTTTGTTTGCCGGCATTGCGGCGTTGGTTTCGCAAGGGAAAAAGCGTTGCAGTCCCACGCTAGGATCCACGGAGGTGACTCACCCGTAGAGTGTGGCGAGTGCGGTGAGCTGTGCTGGTCCCGCGAGGCGCTCAGCATGCACGCAGCGCAGAGGCATCCGCACGTCGCGCCGCGCACACACCGCGAGCCTTCGTACGACGAGTCAAACTCTGATGACGACATAGATTTCCGGATGTCGCCGATGGCGCAGAGTGACCGCGGCGTATATGAGAACGTTCGCGGCCCAGAGCTGTTCTGCCAAGACTGTGGCGTTGCTTTCCAACGAGTAGACTTACTCCGACGCCATGTTGCAGCAGCACATAGCTATAAACGCCACAATAGTACGAGCAGCACATGGGGAGAGCATACGTGCGATGTGTGCGGGGAGAGTTGTACGGACGCGTTACAGCTGCTAGCGCACGCTGAGGGGCATGCGGAGAGGCATCGCCCTAGCAATAGACTAAAGAAAATGGGTCGTGGAAGAAACAATACGTCAGGAAGTAGCACAAGACAATTTCCGTGTAGAGAGTGTGGTAAGGTGTTCGGATCACGTAGTTCACAGCAAATCCACATTAGAATCCATACCGGCGAGCGGCCGTATGCTTGCCGATTTTGCTGGAAAGCCTTCGCTGATGGAGGGACCTTGCGGAAGCATGAGCGGATACACACTGGAGAGAAACCGTACGCATGCGCAGTGTGTCCCCGCGCGTTCAACCAACGAGTGGTCCTGCGTGAACACGTGCGCTCACATCACTCGGCACCAGATCGCCGCGCCAAcggtgGAAATTCGTATTGTTGCGTAGTATGCGGTCGGAGTCTACATTCCAGTGTAGAGTTAGTACAACATTTGATTCAGCATTGTGATGCAAACACAGCTCTGAAACGCCAGCCACAGAGCGGTCCCCGAAAATATAAACGCCGACGGAAACTAAAAACGGAAATACCATCACCGAAGCGTGAATGGGAAGAGGAGCCGGAACGAGGTTCGTCGCCGTCAGGCGCCTCCAATGTGTCGCCCACATCGCCTGTCCGCAGTAATCCATCACCGCTTCGTCGTAATACGTCACCACCTCGACGCAAGATTTCGCCTCCCCGGCGCCGACGGCGGCGCGTGCAACCGCCACCCCCACGACCTCGTATGATACATACCGAGGAGCCCAAAACTAGAACTAAACAGGTACGTAGTCGCCGACCACCGGGGCATCCTGCGGACGATCTTCGCGCTATAGTTCCGCGATCCTCGTCGCCGGTGCCACCTACCTCTCCCCCGGTATCCCCTCCCTCTGCCTGTACAGCCCCGTCTCCGTGCTCGTCACCAACGCCGCTATCTCCGACGTCACCGCATTCTCCGACCGGTCCTTACAAGTGCGAAATGTGTTCACTGGAGTTTCCCCGCCGCGACGCGCTGCTGCTTCACGTACCCGTTCATATTTGA
Protein Sequence: MESTGVDFNLHWEEVVIKNSPKHENQEICNLEGVQTVSYATITSEEMIADTDQMAAENLMYLSQDVVGYTETTELADDLNVECVTEEVITDDWVLAGGQERVEVPLEQLVTPVSDVKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPEHTDSLDYDDVLTDDTQLLKPKKKRGRRKKNTEPAENGVWENMTSARTQQWQRRARTPAPRSPSPPSEPEPPPAPPTPPPPTDPSRPFVCRHCGVGFAREKALQSHARIHGGDSPVECGECGELCWSREALSMHAAQRHPHVAPRTHREPSYDESNSDDDIDFRMSPMAQSDRGVYENVRGPELFCQDCGVAFQRVDLLRRHVAAAHSYKRHNSTSSTWGEHTCDVCGESCTDALQLLAHAEGHAERHRPSNRLKKMGRGRNNTSGSSTRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGNSYCCVVCGRSLHSSVELVQHLIQHCDANTALKRQPQSGPRKYKRRRKLKTEIPSPKREWEEEPERGSSPSGASNVSPTSPVRSNPSPLRRNTSPPRRKISPPRRRRRRVQPPPPRPRMIHTEEPKTRTKQVRSRRPPGHPADDLRAIVPRSSSPVPPTSPPVSPPSACTAPSPCSSPTPLSPTSPHSPTGPYKCEMCSLEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958137;
90% Identity: iTF_00249891; iTF_01494503; iTF_01495216; iTF_01496754; iTF_01495955;
80% Identity: -