Tjap000296.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000007.1:58276-61620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.13 13.3 0.5 2 20 106 124 105 125 0.95 2 13 0.01 1.1 10.4 4.6 2 23 248 270 248 270 0.91 3 13 0.00069 0.075 14.1 0.7 2 23 326 348 325 348 0.94 4 13 0.63 69 4.8 3.1 3 23 428 449 426 449 0.95 5 13 0.0043 0.47 11.6 0.2 1 23 490 513 490 513 0.96 6 13 0.0057 0.62 11.2 0.1 3 23 560 581 559 581 0.94 7 13 0.0018 0.19 12.8 3.2 2 23 605 627 604 627 0.90 8 13 0.073 8 7.7 5.7 2 23 670 692 669 692 0.96 9 13 0.11 12 7.2 4.2 3 23 707 728 705 728 0.92 10 13 0.00014 0.015 16.3 0.1 2 23 773 795 773 795 0.93 11 13 0.34 38 5.6 1.0 1 23 873 895 873 895 0.97 12 13 0.0036 0.4 11.8 3.1 2 23 908 930 907 930 0.95 13 13 0.04 4.3 8.6 0.9 1 23 995 1018 995 1018 0.97
Sequence Information
- Coding Sequence
- ATGGCATCCACAGAGGTTCAGGAGTCACTTTTACTAGATGCCACAGAATTCGACAGCGAAAGTTGCAGCAGCGATGACCGATGTACTAACAAACGCGTTGGCGCTGATCTTGAATCTGCAGGACCCAAGAAAAGGAGGAAACAAACAACTCCCCTAAGATTGCCTACGAGTTTGATGACAACAGGTCGTCACGAATCTGAAGATGAAGCGGGAGATAACGAAAATCTAAATCCGGAAGGTAAGATGATAAATTCACCTCAATCAAAGTCGCTTCGCGCACAATCTGCGCAGGACGAGAATCGAGACGCGCAGAACCAATGCCATATGTGTGATCTGTCTTTTGATAACAAGACAGCGCTGAGCCAACACCTTGAATGCGAGCACTATATCGATTCATCACAACAGATGCCATTGAAAGCTCCAAActtaataaaacaagaaatagATGCAAGCAATTTTTCAGACCAATCAACGAGCCCTGTTAATTTATCGTCGAttagtatgaaaaatttttcctgGATGCCGGCTCAACCAATGATGGCAACTCAAACTCAGAAAGATGATTGGTCCGCTAATCCACCTAGATTAGTTATACCTGAACACATGCAGGGTATACCACCCTTATCGAGCGCACTCACGCAATATCTACATTATCCAGGATTCCCTCTTCAAGATGCAAGTCAGATGCCACCACGAACTTCTCTTGGGCCTGTCCCACCAAGGATTTTCAATCGCGACGCTTATTGTGAGCTCTGCAACAaagaattttgcaataaatattttttgaaaacgcaCAAGGCTAACAAGCATGGTATCTACTCAGATACTTCTAGTCAAAGTTCAACTGGAGACGCAGGCGTTATAGCACCTGTATCATTTTCTACAACAACATTAAACAACATTAAAACCGAACAAGTACAGTTACCAGAAAGTAATGCCACGTCGCCATTTGCAGATAGTCCTAAGCCAAGTATTTCTTGTGATATTTGTCAAAAACGTTTCAAGTCTGAAGATTTGGTAAACAAGCATAAACAGCAGGTTCACGAAGAAATTATCGATCCAAAACAACTAGAAGATAAGCAAGACGTTGTTCCTAGTCAAAGTCCAAGTGTGAtggaaatgttatttaaacaAGAATACGGCACTGAACAAGAAGAACCAGCCTTTTCACCCGTGCAAAGACTCCACCAAGTTCAGCAGCAAGCAGTTCAGCTAGTCACCGAAACTGGATTAAGTATTGAACAACTGCGGAAATTAGGAGTTATCAATTCAGAGACATTTTGTGATATTTGCTGTAAAGAGTTCAACAACAAATTTGTCCTACAAGCACATAAGCTGAAACAACAtggaattttctttcaaaacaaTGACAAGACATCAGCGAGTTGGCATAACATCCAAACAAGtcctttaaatttaattgtcaacGAATCAGACAATTTGGGATCCAGTAACCGTGATGACGAATACGAGTGTAAAATTTGTGGAATTCGATTTCAGACTATTGAATTGTACGATGTGCATCGACAAAGAATTCACGACGAAAAACTAAAGTCTCCTACAAATGATCCCGAGTCCTCAAACCACAAAGCAGACACGATTTCGGAAGATCTGCAGAAACTACAAACCATGATACTTCAACTTAACGGATTGGAATCATACAAGGCGGGTACCCTGTGTAGTGTTTGTGGAACAGAATTCGAAAACAGAGCTGTCCTTCAAATGCATATGTCAGCAGAACATGATTACTTAACTGAGAACACTCCACCACCACAAGATTCAGACAAGTCTTCGTCCAACGGTATCACTTGTTGTTGCACAATGTgcgaaaaagaattttcaaatgaagatgCCTTACGTAAACATGTAACTGAAGACCATCCAGCCTCAACGCCAAATACTATTAACTTACCTCAGTTGCCATCTACTGTTCTTGCTTCTTCCACTCCTAAACTACCATCACAACCGGAACGCAAAGTCCCTTCGTCCATGACTCCTACCTCAAGCTATTgtgaaatttgtaacaaaGAATTGtgcaacaaatattttatgaagaCACATATGCACAGAATGCACGGAATTGAAATCAGCAACGGTGCTCAGATAGGCGGCGTCATCTGCAACATTTGTAACAAGGAGCTATGCAGCAAGTACTTTTTACGAGTGCACAAACACAATACACATGGCATTATTGATGAATCAACTCCTGTTCAAATGAAACCAGACACTTTTGATACGTCTAACTCTGAAGACAATTCATTGAAACCGGAACATCCGAATGATCTCAGTAATAGGTACTTCAGCCATTTTACTGAAGTTTGTCCAATTTGTAATCGCAGGTTCAGGAGTGTAAAATGGTTGAAAGCTCACTTATTAGGAGATCATGGAAAAGCTGGAGTAGAAAAATGGCGGGAATTTGAAGAGCAGTATCCAGTTACGCGAATCGGAACCAGACCTACTACCATTCCAAGATCATCACAGCCCAGTCCAAGTTTGAAAATACCCAACGGTCAAGAGGTCATCCAGCAGAATAAAATCGGAGACATTGCAACTCTTGGAACTCAAGTTCTTTCGAATCTCTTCGGCTCGCCAACAGACGATCAGCGTTCTAAGAGTTATCGTTGTTCTTTATGTAATTTCACCACCACTGCATTgccgtttttgtttttacatgaAAGAAGCCACGCGAATCCTCAAGGAATGGAAGGGATGCAATCACTGCAATGTCCCATTTGTTCGCAGGTGTTTCCAAAATTGGAGTTGCTCCATCACCATTTATTATCGTGTCATCAATTTCCTGGTATCTTGTCTCAATTTCAATCTCCCAGTtccaataattatttaaacaaagaaTTAAAGGAAAATGCGATTATTGATGTAAAACCTGACAAAAAACAGGAGGCGGGATACACTAATGAAAGCCAATCTCTCGTCAGTCAGAAAGCAGATCCTGCAACTATCGAAGTCACACCACAAGGAGCATACAAATGTGCGCAGTGCGGTTTCGCGACATCAAATTTGAACAGAATAAAGAAGCACGTGAAGAAAGACCACAAATCAATTGGAGATGTTACGGACAGCGTGATTGCAGAACTTAGCCGGACACTCAAGGAAATAGCTAACAAACATAAGGTGCCAGCAACCTACGCTATGCCACAAGATTTGAATTCTAATCCTGATAAGACTATAATGCAACCATTCTTGATCGAGGAATTTGATGTGGGAGTTCAAGGGATCGACGATTGCAGCCCAATAAAGCGCTTCACTCCAGCGCTAGTTTATCTACCAGTGAAAACTAGAGTGAACACTGTCCTCACGGCGTCATTTACCTTGAGTCCTGCGTAA
- Protein Sequence
- MASTEVQESLLLDATEFDSESCSSDDRCTNKRVGADLESAGPKKRRKQTTPLRLPTSLMTTGRHESEDEAGDNENLNPEGKMINSPQSKSLRAQSAQDENRDAQNQCHMCDLSFDNKTALSQHLECEHYIDSSQQMPLKAPNLIKQEIDASNFSDQSTSPVNLSSISMKNFSWMPAQPMMATQTQKDDWSANPPRLVIPEHMQGIPPLSSALTQYLHYPGFPLQDASQMPPRTSLGPVPPRIFNRDAYCELCNKEFCNKYFLKTHKANKHGIYSDTSSQSSTGDAGVIAPVSFSTTTLNNIKTEQVQLPESNATSPFADSPKPSISCDICQKRFKSEDLVNKHKQQVHEEIIDPKQLEDKQDVVPSQSPSVMEMLFKQEYGTEQEEPAFSPVQRLHQVQQQAVQLVTETGLSIEQLRKLGVINSETFCDICCKEFNNKFVLQAHKLKQHGIFFQNNDKTSASWHNIQTSPLNLIVNESDNLGSSNRDDEYECKICGIRFQTIELYDVHRQRIHDEKLKSPTNDPESSNHKADTISEDLQKLQTMILQLNGLESYKAGTLCSVCGTEFENRAVLQMHMSAEHDYLTENTPPPQDSDKSSSNGITCCCTMCEKEFSNEDALRKHVTEDHPASTPNTINLPQLPSTVLASSTPKLPSQPERKVPSSMTPTSSYCEICNKELCNKYFMKTHMHRMHGIEISNGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIDESTPVQMKPDTFDTSNSEDNSLKPEHPNDLSNRYFSHFTEVCPICNRRFRSVKWLKAHLLGDHGKAGVEKWREFEEQYPVTRIGTRPTTIPRSSQPSPSLKIPNGQEVIQQNKIGDIATLGTQVLSNLFGSPTDDQRSKSYRCSLCNFTTTALPFLFLHERSHANPQGMEGMQSLQCPICSQVFPKLELLHHHLLSCHQFPGILSQFQSPSSNNYLNKELKENAIIDVKPDKKQEAGYTNESQSLVSQKADPATIEVTPQGAYKCAQCGFATSNLNRIKKHVKKDHKSIGDVTDSVIAELSRTLKEIANKHKVPATYAMPQDLNSNPDKTIMQPFLIEEFDVGVQGIDDCSPIKRFTPALVYLPVKTRVNTVLTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493134;
- 90% Identity
- iTF_01493134;
- 80% Identity
- -