Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000521.1:37967-41311[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0039 0.43 11.6 0.5 2 20 106 124 105 125 0.95

2 13 0.0093 1 10.4 4.6 2 23 247 269 247 269 0.91

3 13 5.2e-05 0.0057 17.5 0.8 2 23 322 344 321 344 0.94

4 13 0.58 64 4.8 3.1 3 23 426 447 424 447 0.95

5 13 0.0099 1.1 10.4 0.2 1 23 489 512 489 512 0.95

6 13 0.0052 0.58 11.2 0.1 3 23 560 581 559 581 0.94

7 13 0.00064 0.072 14.1 2.8 2 23 605 627 604 627 0.90

8 13 0.067 7.4 7.7 5.7 2 23 670 692 669 692 0.96

9 13 0.097 11 7.2 4.2 3 23 707 728 705 728 0.92

10 13 0.00013 0.014 16.3 0.1 2 23 773 795 773 795 0.93

11 13 0.32 35 5.6 1.0 1 23 873 895 873 895 0.97

12 13 0.0021 0.24 12.5 4.1 2 23 908 930 907 930 0.95

13 13 0.037 4.1 8.6 0.9 1 23 995 1018 995 1018 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0039	0.43	11.6	0.5	2	20	106	124	105	125	0.95
2	13	0.0093	1	10.4	4.6	2	23	247	269	247	269	0.91
3	13	5.2e-05	0.0057	17.5	0.8	2	23	322	344	321	344	0.94
4	13	0.58	64	4.8	3.1	3	23	426	447	424	447	0.95
5	13	0.0099	1.1	10.4	0.2	1	23	489	512	489	512	0.95
6	13	0.0052	0.58	11.2	0.1	3	23	560	581	559	581	0.94
7	13	0.00064	0.072	14.1	2.8	2	23	605	627	604	627	0.90
8	13	0.067	7.4	7.7	5.7	2	23	670	692	669	692	0.96
9	13	0.097	11	7.2	4.2	3	23	707	728	705	728	0.92
10	13	0.00013	0.014	16.3	0.1	2	23	773	795	773	795	0.93
11	13	0.32	35	5.6	1.0	1	23	873	895	873	895	0.97
12	13	0.0021	0.24	12.5	4.1	2	23	908	930	907	930	0.95
13	13	0.037	4.1	8.6	0.9	1	23	995	1018	995	1018	0.97

Sequence Information

Coding Sequence: ATGGCGTCCACAGAGGTTCAAGAGTCACTTTTACTAGATGCCACAGAATTCGACAGCGAAAGTTGCAGCAGCGATGACCGGTGTACTAACAAACGTGTTGGCGCTGATCTTGAATCTGCAGGACCAAAGAAAAGGAGGAAACAAACAACTCCGGTGAGATTGCCTTCGAGTTTGATGACAACAGGTCGTCACGAGTCTGAGGATGAAGCGGGAGATAACGAAAATCTGAATCCGGAAGGTAAGATGATAAGTTTACCTCAATCAAAGTCGCTTCACGCACAATCTGCGCAGGACGAGATTCGAGACGCGCAGAACCAATGCCATATGTGTGAGCTGTCTTTTGATAACAAGACAGCGCTGAGCCAACACCTTGAATGCGAGCACTATATCGATTCAGAACAGATGCCATTGAGAGGTCCAAACTTAATCAAACAAGAGGTAGATGCAAGCAATTTTTCAGACCAGTCAACGAGCCCTGTTAATTTATCATCGAttggtatgaaaaatttttcgtggATGCCAGCTCAACCATTAATGGCAGCTCAATCTCAAAAGGACGATTGGACCACTAATCCAGCCAGATTAGTTTTACCTGAACACATGCAGGGCATACCACCCTTATCGAGCGCACTCACGCAATATCTACATTATCCAGGATTCCCTCTTCAAGATGCAAGTCAGATGCCATCACGAACTTCTCTCGGACCCGTCCCACCAAGGATTTTCAATCGCGACGCTTATTGTGAGCTCTGCAACAaagaattttgcaataaatattttttgaaaacgcaCAAGGCTAACAAACATGGTATCTACTCGGATACTTCTAGTCAAAGTTCAACTGGTGACCCGGGTGTTATAGCGCCTGTATCATTTTCTACGAGCAACGTTAAAACCGAACAAGTACAGTTAGCAGAAAGTAATGCTACGTCGCCATTCGCAGTTAGTCCTAAGCCAAGTATTTCTTGTGATATTTGTCAAAAACGTTTCAAGTCTGAAGATTTGTTAAACAAGCATAAACAACAAGTTCACGAAGAAATGATCGAACcaagagaaaaacaattagGAGATAAACAAGAAACTGTTGCTAGTCAAAGTCCAAGTGTGATGGAGATGTTATTTAAACAAGAATACGGTGCTGAACAAGAAGAGCCGGCTTTTTCACCCGTGCAGAGACTTCACCAAGTTCAGCAGCAAGCAGTTCAGTTAGTCACCGAAACTGGATTGAATATCGAGCAACTGCGCAAATTAGGAGTTATTAATTTAGATACATTTTGTGATATTTGCTGTAAAGAGTTTAACAACAAATTCGTCCTGCAAGCACATAAACTAAAACAACAtggaattttctttcaaaataatgacaaaacgTCAGTAAGTTGGCACAACATTCAAACAAGTCCTTTAAACTTGATTGTTAACGAATCGGACAACAATTTGGGAGCTAGCAACCGCGATGACGAATacgattgtaaaatttgtggAATTCGATTTCAGACTGTAGAACTGTACGACGTGCATCGTCAAAGAATTCATGACGAAAAAGCCAAGTCTCCTAAAACTGATGCTGAATCGTTTAACCATAAAGCAGATACGATTTCTGaagatttgcaaaaacttCAAACCATGATACTTCAACTCAACGGACTGGAATCATACAAGGCGGGGAGTGCCTTGTGCAGTGTTTGTGGAACCGAGTTCGAAAACCGAGCTGTCCTCCAGATGCACATGTCAGCGGAACATGATTATTTAACTGACAACACCCCACCGCCACAAGATTCCGACAAGTCTTCGTCCAATGGTATCACTTGTTGTTGCACAATATgcgaaaaagaattttcaaatgaagatGCCTTACGTAAGCATGTAACTGAAGACCATCCAGCCTCAACGCCAAATACTATTAACTTAGCTCAGTTGCCATCTACTGTTCTTGCTTCTTCCACCCCTAAACTACCATCACAAGCTGAACGCAAAGTTCCTTCGTCCATGACCCCTACCTCAAGCTACTGCGAAATCTGTAACAAAGAATTgtgcaacaaatattttatgaagaCACATATGCACAGAATGCACGGAATTGAAATCAGTAACGGTGCCCAGATAGGCGGCGTCATCTGTAACATTTGTAACAAGGAGCTATGCAGCAAGTACTTTTTACGAGTGCACAAACACAATACACATGGCATCATTGATGAATCAACTCccattcaaatgaaacaggACACCTTTGATACGTCCAACTCTGAAGACAATTCATTGAAACCGGAACACCCGAATGATCTCAGTAACAGGTACTTCAGCCATTTCACTGAAGTTTGCCCAATTTGTAATCGTAGGTTCAGAAGTGTGAAGTGGTTAAAAGCTCACTTATTAGGTGATCATGGAAAAGCTGGGGTAGAAAAATGGCGGGAATTTGAAGAACAGTATCCAGTCACGCGAATTGGAACCAGGCCTACCACCATTCCAAGATCGTCCCAGGCCAGCCCCAGTTTGAAAATACCCAATGGTCAAGAGGTCATCCAGCAGGCTAAAATCGGAGACATTGCAACCCTTGGGACTCAAGTTCTTTCTAATCTTTTCGGCTCGCCGACAGACGATCAACGTTCTAAGAGTTACCGTTGTTCTTTATGTAATTTTACTACCACTGCGCTGCCGTTTTTGTTCTTACACGAAAGAAGCCATACGAATCCTCAAGGATTGGAAGGGATGCAATCGCTGCAGTGTCCCATTTGTTCGCAGGTGTTTACAAAATTGGAATTGCTCCATCACCATCTATTGTCTTGTCATCAGTTTCCGGGTATCTTGTCTCAGTTTCAGTCTCCCAGTTCCAATAATTATTCGAACAAAGAATTCAAGGAAAATGCGATTATTGATGCAAAAGTTGAGAAGAAACAAGAAGTGGGATATGCCAATGAAAGCCAGTCTTTAGTTAGTCAAAAGCCGGATCCTGCAACTATCGAAGTTACACCACAAGGAGCGTACAAATGTGCGCAGTGCGGTTTCGCgacttcaaatttgaatcgaataaaaaagcaTGTGAAAAAAGACCACAAATCAATTGGGGATGTTACGGACAGCGTGATTGCAGAACTCAGCCGGACACTCAAGGAAATAGCTAACAAACACAAGGTACCAGCAACTTATGCTATGCCACAAGATTTGAATTCTAATCCTGATAAGGCTATAATGCAACCGTTCTTGATCGAGGAATTTGATGTTGGCGTTCACGGGATTGACGATTGCAGCCCGATAAAGCGCTTCACTCCAGCACTAGTATATCTGCCAGTTAAAACTAGAGTGAATACAGTCCTTACGGCGTCATTTACCTTGAGTCCTGCGTAA
Protein Sequence: MASTEVQESLLLDATEFDSESCSSDDRCTNKRVGADLESAGPKKRRKQTTPVRLPSSLMTTGRHESEDEAGDNENLNPEGKMISLPQSKSLHAQSAQDEIRDAQNQCHMCELSFDNKTALSQHLECEHYIDSEQMPLRGPNLIKQEVDASNFSDQSTSPVNLSSIGMKNFSWMPAQPLMAAQSQKDDWTTNPARLVLPEHMQGIPPLSSALTQYLHYPGFPLQDASQMPSRTSLGPVPPRIFNRDAYCELCNKEFCNKYFLKTHKANKHGIYSDTSSQSSTGDPGVIAPVSFSTSNVKTEQVQLAESNATSPFAVSPKPSISCDICQKRFKSEDLLNKHKQQVHEEMIEPREKQLGDKQETVASQSPSVMEMLFKQEYGAEQEEPAFSPVQRLHQVQQQAVQLVTETGLNIEQLRKLGVINLDTFCDICCKEFNNKFVLQAHKLKQHGIFFQNNDKTSVSWHNIQTSPLNLIVNESDNNLGASNRDDEYDCKICGIRFQTVELYDVHRQRIHDEKAKSPKTDAESFNHKADTISEDLQKLQTMILQLNGLESYKAGSALCSVCGTEFENRAVLQMHMSAEHDYLTDNTPPPQDSDKSSSNGITCCCTICEKEFSNEDALRKHVTEDHPASTPNTINLAQLPSTVLASSTPKLPSQAERKVPSSMTPTSSYCEICNKELCNKYFMKTHMHRMHGIEISNGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIDESTPIQMKQDTFDTSNSEDNSLKPEHPNDLSNRYFSHFTEVCPICNRRFRSVKWLKAHLLGDHGKAGVEKWREFEEQYPVTRIGTRPTTIPRSSQASPSLKIPNGQEVIQQAKIGDIATLGTQVLSNLFGSPTDDQRSKSYRCSLCNFTTTALPFLFLHERSHTNPQGLEGMQSLQCPICSQVFTKLELLHHHLLSCHQFPGILSQFQSPSSNNYSNKEFKENAIIDAKVEKKQEVGYANESQSLVSQKPDPATIEVTPQGAYKCAQCGFATSNLNRIKKHVKKDHKSIGDVTDSVIAELSRTLKEIANKHKVPATYAMPQDLNSNPDKAIMQPFLIEEFDVGVHGIDDCSPIKRFTPALVYLPVKTRVNTVLTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493855;
90% Identity: iTF_01493855;
80% Identity: -