Tjap013520.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010001473.1:8924-14622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00027 0.03 15.4 3.4 1 21 98 118 98 119 0.96 2 25 8.3 9.1e+02 1.3 4.6 1 23 126 149 126 149 0.91 3 25 1.2 1.3e+02 3.9 3.2 1 22 157 178 157 180 0.88 4 25 0.11 12 7.2 0.3 1 23 366 389 366 389 0.95 5 25 4.3 4.7e+02 2.2 0.2 5 23 396 415 395 415 0.90 6 25 0.11 12 7.2 0.1 1 23 421 443 421 443 0.97 7 25 0.00026 0.029 15.4 0.2 1 21 629 649 629 650 0.95 8 25 0.015 1.6 9.9 1.1 2 23 658 680 658 680 0.94 9 25 0.0038 0.42 11.8 4.2 1 23 688 711 688 711 0.96 10 25 0.036 4 8.7 0.3 2 21 734 753 733 754 0.94 11 25 0.00015 0.017 16.2 0.2 1 23 793 816 793 816 0.95 12 25 1.5 1.7e+02 3.6 0.1 1 20 847 866 847 867 0.93 13 25 0.0079 0.86 10.8 3.2 1 23 875 898 875 898 0.96 14 25 9.1 1e+03 1.1 1.7 1 10 907 916 907 930 0.80 15 25 0.0015 0.16 13.0 0.2 1 20 994 1013 994 1015 0.95 16 25 0.00071 0.078 14.1 2.0 1 23 1022 1044 1022 1044 0.97 17 25 0.28 31 5.9 0.5 2 21 1053 1072 1052 1075 0.88 18 25 8.8e-05 0.0096 16.9 0.3 1 21 1150 1170 1150 1171 0.95 19 25 0.01 1.1 10.4 0.5 1 23 1178 1200 1178 1200 0.97 20 25 0.0047 0.51 11.5 1.3 1 23 1209 1232 1209 1232 0.92 21 25 0.04 4.4 8.6 0.2 1 21 1295 1315 1295 1318 0.90 22 25 1.1 1.2e+02 4.1 0.0 1 21 1514 1534 1514 1535 0.93 23 25 0.046 5 8.4 4.8 2 23 1541 1562 1540 1563 0.95 24 25 0.066 7.2 7.9 0.1 3 23 1617 1638 1615 1638 0.95 25 25 0.063 6.9 7.9 0.7 1 23 1641 1664 1641 1664 0.97
Sequence Information
- Coding Sequence
- ATGCTATATCGATTTGTGAGCCTTGGAGAGTGGCCTTTCATGAAAGGAAGAAGAACTAGACGCAACGAGTCGGTGGGAGTGCTCACGACCTTGTTCCCACTCAAACTCAATCAAAAAAGTGCGCCGGAAGCGGCAGCACCACCGGTGGACAATGAGTCCCAACAATTTGCAACAGAAGATGAGGACTCCGATTCAAGCCAAATCATTTACCGAACAAGAAAGCGCAAACTAGACATGACAGAGGAAAACCCGTCAACAAACAAAGCGCCACGGCTCGAAGCAGATGAAACATATAGATGCCAATTGTGTCGGCACGTTTTCTCTACGCACATGAATTTGCGAAGACACATGCAAAATATGAGCAACACCGGCGTTTACCATTGCTCAATTTGTAATCTGCGCTACAACGACTTGCAGCGCTACCACACTCATAACAAAAATGCACACGGATCGTCATCATATAATAACTTCCAGTGTGACTTTTGCAAGGAAAATTTTATGCATAAGTCCATCTTGTCGGCCCATGTGGTTCATTATCATCTGGATCCGAAGAAATCGGGAACGGTAGAAAGTTTAAAACCAGAaactcaaaaattgaaaccggCCATTCTGTTGAAGAACATCATCCCAAcaagtttgaaaatcaatttggaTCCATCTTCTGGTTCCACAACTAAAAGTTCACCGCCCAAGCAGAGACAATCAAAGTTGACGGATTTCCTtataagaaaatgtaaaactttgCCAGTGGCGCAACCTGGTCCAAGAAGTATGAAACGAGCGGCCTTCAAAAAGTCTGAGGAGAACCTCCGGACACTTAACTATTTCATCTCAGTGGGCAAAAACCGATCCGACCCTAAGTACGATTCCTATTTAGCCGAATGTTTTGATTGCAAGCCCTGTTCGGTAGTTTTAGAACGAGTGGAACAGGTAAAACGACCTATCAAGATTGGAAATGTCTATTATTACAAAGGGATCCCGTTTCGAAGCCCGCGAGTGGTCTTGGAAGAGCGGCGGCACAATTCTTCGGTTTCCACCGCCCTGGacgattttatttcatcaaacttGGAAATTCCCTCGAGCTTGTCTTCCATCTTCACCTGCAAGGTCTGCGGCCAGGAGTTGGACACTGTCGAACGGTTGGTGTATCACATCCGGTTTCGCCACACCGTCTACACCTCGAGCATCTGCAGCGCCCGGTTCACCAGCATCAAAAAACTCTCTGCCCATTATGCCCAGAAGCACCGAACCCAGGGCTCATACGAATGCAGCATCTGCGGCGATACTCCCGCCACCTACGTGGAACTACGCAAACACTATAAGATACACTGCATTCCTATTGACGACATTGACGTTGTCGACAAGACGACAATCGACCTCAACAGCGACTGCCAACAAAAGAACCGGGCTCTTATCTGTGTCTGTGGCAGCAGCCAGACGACCAAGTCGAGCTACAAGACGCACCAGAAGAGCTGCAGGGAGTGGCTGAAGATTCGCGCAGCCGCTCGCAAGTCCGTCGGACTGCCTCAGATGAGCCAGGAGATTAAAAGCCAAGATTCGCCTCAGGTCTCAGAAAGTTCGATTTTGAAGGTGGAGAAAGTCTCGCCGCAAAAAACAGTGCCACCGTTTGTTCGACCACCCTCGCCTCCTTCTTCCCCAGAAGTCATCGCCCAGATGCCGTCGCCGTTGCCGCCGTTGCCGCCGttgccgccgccgccgccgccgccagAGGTTGTCTTGGATGAGGTCCGGACAGAGTTTGTTTCCGTCGACGACTATGCAGAAACCGACTCGGTCTCTGATTCTCCGCCGCCGGTCTCTGATTCGAGTACCTTCCAATACGTGAGCTTGTCCGACGCTCAGCCGCCCCATCCAAACAACACTTACCCCTGCAAGGTGTGCGACACGCAGTTTAAAACGCTCGCCAACTATGAAAAGCACGTCAAGATCTACAATACGGGTAAACAGGAGGTCTGCAAGTTTTGCAACAGCTCGTTCCCCTCGAAACAGCAAATGCAGAACCACATTAGTTTGACGCATGTTAACTTCAAAGCTTTGGCTTACCACTGTCCCGTGTGTAACCAAGGGTTTAATAAAAAGTCTTCATACCGGATGCACGTGAAGCACATCCACGCGTCCGACCTTCCCGTCGGGGTTGAGACGATCTTTCTCGCCGAGAATGATCCGTTTGAGAATCTAAGGTGCGAGATTTGCAAGATGTCGTTCGATAGTATGGAAGAGATGAAGGTACACCGCAAGTTTTACGACCCGTCGGTTATCCTGTGCTGCGCGAGTTGCGAGATGGAGTTTCAGGGTGACTTTGCTCTGACGCAACACAATAAGATGATTCATCCGGGACAGTCGCTCTACTACGCCTACAACTGCAACATCTGCGGCGAGGGATTCGCCAATGACAACGAGCTCAATTCTCACATGCTGCACGTGCACACGTGGGCCTCGAGCGACATCTGTAACCAACAACCACTCGCGATGGAGGTCGAGGCCCATTCGTTTAGTGACAACATAACCACGGGGGTGTATGTCTGCGTCACCTGCAAAATGACTTTCCTCGACCTTGAGGGCCTCAGAGTACACAGGGATGAGTTCGTAGACGACGGCGATTACCAGTGCCACATGTGCTACAAGAGGTACAAGACCATGGAGCTTCTTGACTCGCACCTACAGCTCACCCACATGCCCGTCAACAACATGGTCACCTTCAAGTGCCAGCTATGCGGCGAAGTTTACCTCAGTGCCATTTCTCTGAGTTGCCACGAGAAGCACTTTCATCCTCTCGAGATGGCGCTCAGCCAACCGGCGGAACAACTTCAACTCAATCAATTGGACAAAAACCAGACGGAACTCAAACAAATGACCAGAGTCCCGGCTTTTAAGACGTCAGTCTCGACGATCATCAATACCGCGGTCGCCCGACCATTGGATAGGGTCCAGGCCATTGTAAAGAATTCGAAGAACGCCTTCCAGTGCAACGGTTGCAAGCTCAGCTTCGCCGACAAGATCAGTCTCGAGTATCACAGACTCGAGTACGATAATCAGGGCGAGTTCGAGTGCAACATCTGCAATAGGAAGTTCCAGGTGGCTCAGCACCTGCAGGCCCACAAGGACAAGCACAACGAGGGCGTGCAGTACAACTTGAGGTGTAGCGTCTGCTCCGAGGGTTTCAGCGCGTCATCATTCCTCTTCATGCACGTCGGTCATCTGCATGGACTCGAGGAACTGAAGAAGGTTCTCCAGCGGATGTCCTCGAAGAAAGATGCGAGGCCCACCCAGCGCAACTTCAGTATCGAGCTTGACGACAAGACCATCCACGAGGTGAGGATTTCCGTGAAAAAGAACCTCCTTGACAGCAAGTTCCTCAAGCAGATCATCGTCGAGGCGTTCACCGACTTCTCCGCGGAGTTCCCCCAGACCACGTGTAGATACGACTTTCAATGTCGCGTGTGCAAACTGGTGTTCAACAGTCAAGCCAATTTGAACAAGCACCTGATCAGGTACCTCAAGGAGGGCGAGTACGCGTGTAAATTGTGCGACAAGAAGTTCCGCTGGGTTGCGAACGTGGAGGACCACCGCAGAAAGCACTTCAACATCACTTGCACCAACGTCTTTACCTGTCCCATCTGCTTTGAACGATTCGTCACCAACATCTCTCTGTACGCCCACAAGGCCCACTTCCACGATCGGACCCTCCATATGAACAGCCAGATGGACTTGATCCTCGCAGAGGACCTCAAGTATCCCGTCCAAGACACCGACACCGATATCAATTCCGTTGTGGACTCCGCGAACAACGGAACGTGCGCAAATGGATTTTCAGCTGGACAGGACAGAGCAGCCGGATCGGATGACCATCAAACGAAACAATTCACCTGTAGGATCTGTTATGCGACGTTCGGCAATGAGTCCAACATGATGAGCCACGTGGTGGCCAGCCACTCGGAACAACCGGATTCGGACCAGACAGCCCTGGCCCTCTGCGAGACCAGCTTGAACAACTACTTCCTCTGCAGTGGATATATGCAGCTCAAATCCCACAAGGAAACCGTACACAGATCCAGGCAACAACAAGAGGAAgtagaagaagaagaagaaaagaaagaactCAAACTGCCAACGAAGGAACTTGCAAGCAAAGATGCAGGTTCCTCTCCAAGCAAGCTCACTGACAACAGGGTGGGCAAGTTGAAAGTGAGATCCTTCGCCAAGCTTCTTGATGACCACGACGCTAGCAGCTCGAGTCCAGATTCGAGTCGGGATTCAGTCATTGCGTACGCTCAGAGGTCTTCGAGTTCCACTATCCTTAAGAAGGTCCTGGAAAAGAACCCTGTGGCGGCCAGGAAACCTGCTCAGAAACCGGAAGAGGTGGAGCCCCGTCAACCCATTCATGTGAGCAACAACGCTCTAAGTGGCAAGAGGCTGATTGTCACTTGGGACAACATCTACAAACTAGTCAAATCCACGCCGAACGGCTATGTCGATGACCTCAAGTCCCGAATCCATCCAACCGGCATCAGCGTTGCTTTTGAGTGCAAGATTTGTCGGCTGCTTTTCCTCGATGAGAGAAGTCTCGCCGCCCACATGATAAGACAGTGCTGGGAGAACAGGTGCTTCGTCTGCAGCAGGACCTTTGACAACAGCTGCACCGTTCTCAGGCACATCGAGACCCACCACGAGATTGTCTGCCAAGTCTGCGGGGGGGTCTTCCTCGACTCCCTCAGTTTCAACTATCATGTGTCGCAGTGCATCGAGCAGGTCAAAACTGACTGCTTCAAGGTCTCTGAGGAGATGCACCTGACCAGAGCTCATCTTAAGGAACTTAAGGAGATCATTTGCGGTCTCTGCAGGGTCAGCTTCAAGAACATTGAAAATGCCACGGTCCACCTCAAGATGACTCACTGTGTGTACAAGTGCGGCATCTGTCAGGCCAAATTTTATGGCAAGAGTATTATTCAACAGCACATGAAGAGCAACCATTGTAACGCGCCGCAATTCAGCGTTAGATTTTGTGATCGTTGTAATACCGGGCATGCGAACTTTGACGGATTGAGCAAACATGTCTGTGTACGATAA
- Protein Sequence
- MLYRFVSLGEWPFMKGRRTRRNESVGVLTTLFPLKLNQKSAPEAAAPPVDNESQQFATEDEDSDSSQIIYRTRKRKLDMTEENPSTNKAPRLEADETYRCQLCRHVFSTHMNLRRHMQNMSNTGVYHCSICNLRYNDLQRYHTHNKNAHGSSSYNNFQCDFCKENFMHKSILSAHVVHYHLDPKKSGTVESLKPETQKLKPAILLKNIIPTSLKINLDPSSGSTTKSSPPKQRQSKLTDFLIRKCKTLPVAQPGPRSMKRAAFKKSEENLRTLNYFISVGKNRSDPKYDSYLAECFDCKPCSVVLERVEQVKRPIKIGNVYYYKGIPFRSPRVVLEERRHNSSVSTALDDFISSNLEIPSSLSSIFTCKVCGQELDTVERLVYHIRFRHTVYTSSICSARFTSIKKLSAHYAQKHRTQGSYECSICGDTPATYVELRKHYKIHCIPIDDIDVVDKTTIDLNSDCQQKNRALICVCGSSQTTKSSYKTHQKSCREWLKIRAAARKSVGLPQMSQEIKSQDSPQVSESSILKVEKVSPQKTVPPFVRPPSPPSSPEVIAQMPSPLPPLPPLPPPPPPPEVVLDEVRTEFVSVDDYAETDSVSDSPPPVSDSSTFQYVSLSDAQPPHPNNTYPCKVCDTQFKTLANYEKHVKIYNTGKQEVCKFCNSSFPSKQQMQNHISLTHVNFKALAYHCPVCNQGFNKKSSYRMHVKHIHASDLPVGVETIFLAENDPFENLRCEICKMSFDSMEEMKVHRKFYDPSVILCCASCEMEFQGDFALTQHNKMIHPGQSLYYAYNCNICGEGFANDNELNSHMLHVHTWASSDICNQQPLAMEVEAHSFSDNITTGVYVCVTCKMTFLDLEGLRVHRDEFVDDGDYQCHMCYKRYKTMELLDSHLQLTHMPVNNMVTFKCQLCGEVYLSAISLSCHEKHFHPLEMALSQPAEQLQLNQLDKNQTELKQMTRVPAFKTSVSTIINTAVARPLDRVQAIVKNSKNAFQCNGCKLSFADKISLEYHRLEYDNQGEFECNICNRKFQVAQHLQAHKDKHNEGVQYNLRCSVCSEGFSASSFLFMHVGHLHGLEELKKVLQRMSSKKDARPTQRNFSIELDDKTIHEVRISVKKNLLDSKFLKQIIVEAFTDFSAEFPQTTCRYDFQCRVCKLVFNSQANLNKHLIRYLKEGEYACKLCDKKFRWVANVEDHRRKHFNITCTNVFTCPICFERFVTNISLYAHKAHFHDRTLHMNSQMDLILAEDLKYPVQDTDTDINSVVDSANNGTCANGFSAGQDRAAGSDDHQTKQFTCRICYATFGNESNMMSHVVASHSEQPDSDQTALALCETSLNNYFLCSGYMQLKSHKETVHRSRQQQEEVEEEEEKKELKLPTKELASKDAGSSPSKLTDNRVGKLKVRSFAKLLDDHDASSSSPDSSRDSVIAYAQRSSSSTILKKVLEKNPVAARKPAQKPEEVEPRQPIHVSNNALSGKRLIVTWDNIYKLVKSTPNGYVDDLKSRIHPTGISVAFECKICRLLFLDERSLAAHMIRQCWENRCFVCSRTFDNSCTVLRHIETHHEIVCQVCGGVFLDSLSFNYHVSQCIEQVKTDCFKVSEEMHLTRAHLKELKEIICGLCRVSFKNIENATVHLKMTHCVYKCGICQAKFYGKSIIQQHMKSNHCNAPQFSVRFCDRCNTGHANFDGLSKHVCVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493074;
- 90% Identity
- -
- 80% Identity
- -