Tbro013352.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000929.1:10188-21306[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00018 0.02 15.8 3.8 1 21 127 147 127 148 0.96 2 26 0.0048 0.53 11.3 1.4 1 23 185 208 185 208 0.90 3 26 0.042 4.6 8.4 0.8 1 23 393 416 393 416 0.96 4 26 5.1 5.7e+02 1.8 0.2 5 23 423 442 422 442 0.87 5 26 0.19 21 6.3 0.2 1 23 448 470 448 470 0.96 6 26 0.00024 0.026 15.5 0.2 1 21 669 689 669 690 0.95 7 26 0.021 2.4 9.3 2.4 2 23 698 720 698 720 0.94 8 26 0.0058 0.65 11.1 4.7 1 23 728 751 728 751 0.96 9 26 0.0097 1.1 10.4 0.2 2 21 774 793 773 794 0.94 10 26 0.00015 0.017 16.1 0.2 1 23 833 856 833 856 0.95 11 26 2.4 2.7e+02 2.8 0.1 1 20 887 906 887 907 0.91 12 26 0.067 7.5 7.7 4.9 1 23 915 938 915 938 0.95 13 26 8.8 9.8e+02 1.1 1.7 1 10 947 956 947 970 0.80 14 26 0.0014 0.15 13.1 0.2 1 20 1045 1064 1045 1066 0.95 15 26 0.00066 0.074 14.0 2.2 1 23 1073 1095 1073 1095 0.98 16 26 0.48 53 5.1 0.3 2 21 1104 1123 1103 1126 0.88 17 26 8.5e-05 0.0094 16.9 0.3 1 21 1201 1221 1201 1222 0.95 18 26 0.01 1.1 10.3 0.5 1 23 1229 1251 1229 1251 0.97 19 26 0.0045 0.5 11.4 1.3 1 23 1260 1283 1260 1283 0.92 20 26 0.039 4.3 8.5 0.2 1 21 1344 1364 1344 1367 0.90 21 26 0.036 4 8.6 0.1 1 22 1389 1410 1389 1410 0.92 22 26 0.00038 0.043 14.8 1.5 1 23 1414 1437 1414 1437 0.97 23 26 1 1.1e+02 4.0 0.0 1 21 1591 1611 1591 1612 0.93 24 26 0.016 1.8 9.7 2.8 2 23 1618 1639 1617 1639 0.97 25 26 6.7 7.4e+02 1.5 0.1 3 23 1694 1715 1692 1715 0.92 26 26 0.032 3.6 8.8 0.6 1 23 1718 1741 1718 1741 0.98
Sequence Information
- Coding Sequence
- ATGCTGTGTAGACCTGGAGAAGACGGAGAGTTCACCTCCCACCACACTTTCATCATCAAGAATGGCCTGCAACAAGTCACAGTAAATGCTCCCTTACTGTTTAATATATACACATGCGAGTTGCCCAGGATGTTCGGACTGAACAAACCTGGACAAGGTAAGGCAATCGCCCTTGCTGACGACCTGCTCTTATATTTTCACGGGGAAAAAGTGCCGAAACCAACTCTACCGTTGCACAATGAGTCCCTACAATTTACATCAGAATATGAAGACTCtgattcaaatcaaatcatttaCCAAACGAGAAAACGGAAGATGGACAAGACGGAGGAAAATACGTCAACAAACAAGATGTCACGGTTTGTAGAAGAAGAAACGTACAGGTGCAAATTGTGTCGTCACGTTTTCTCCACCCACATGAACCTGCGAAGACACATGCAAAATATGAGCAACGCCGGCATCCACCATTGCTCGATCTGTAATCTGCGCTACAACGACGTCAGGCGCTACCAAACGCATAACAAAAATGCACACGGTTCGTCAAATTTCAACTTCCAGTGTGATTTTTGCAAGGAAAACTTTATGAATAAATCCATGTTGGCGGCTCATGTGGTTCATTATCACCTGGACTCAAAGAAATCGGAAACGCCGGAAAGTTCAAAACCAGAAACTTCAAAACTGAAACCGATGATTTTTCTACAGAACATCATCCCAGCAAGTTCGAATCCATCTTCTGTTCCCACTCCCGGTTCAACTAAAAGTTCACCGCCTAAGCAGAGGCAATCAAAGTTAACAGATTTTCTTATAAGAAAATCTCCAAATTTGCCAGTTGCTCAACCTGGCCCAAAAAGTATGAAACGAGCAGCTTTCAAAAGATCTGAGGAAAATCTGCGGACCcttaattatttcatctcaGTGAGCAAAAACCGATCCGACCCTAAGTATGATTCCTATCTGGCCGAATGTTTCGACTGCAGGCCCTGTTCAGTTTCTTTAGAACGAGTCGATTTGGTAAAACGACCTATCAAGATTGGAAAGGTCTATTATTACAAAGGGGTCCCGTTTCGAAGCCCTAGAGTAGTCCTGGGAGAGCGACTGCACGACTTGTCAGTATCCACCGCCTTGgacgattttatttcatctaacTTAGAAATTCCTTCGAGCTTCTCATCCATCTTCACCTGCAAGGTCTGCGGCCAGGAGTTGGACACATTCGAGCGACTGGAGTACCACATTCGGTTTCGTCACACCGTCTACGCCTCGAGCATCTGCAGCGCCCGATTCACCAGCATGAAGAAACTCTCCGCCCATTACGTGCAGAAGCACCGAGCCCAAGGCACGTACGAGTGCAGCATCTGTGCCGAGAACCCTGGCAATTATTCGGAACTACGCAAACACTATAAAATACACTGTATTGCTATTGATGATATTGACGTGGTTGATAAGACGACTATTGATCTCAACAGTGACTGCCAACAGAAGAACCGGGCTCTTATCTGCGTCTGTGGCAGCAGCCAGCCGACCAAGTCGAGCTACAAGTTGCACCAGAAGAGCTGCCGGGAGTGGCTGAAGATCCGCACGGCCGCCCGCAAGTCCGTCGGACTGCCTCAGATGCCACAGGAGAGTAAAAAGCTAGATCCACCTGAGATGTTAGAAAGTGCGGTTGTGAAGCTGGAGAAACTCTCACCGCTGAAGAATATGCCGCCGTTTGTAAGATCATCCTCGCCTCCTTCTTCACCAGAAGTCATCGGCCAGTTTCCTAATTCGGCGCCACCGTCGCCGCCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACTGCCACCGCCTCCAGAGGTTACCTTCGATGAGGTCCGGACAGAGTTTGTGTCTGTCGATGACTACGCAGAAACTGACTTGGTCTCTGATTCTCCCCCACCGGATTCTTTGAGTACCTTGCAGTACGTGAGCTTGTCTGACACCCAGACGCATCATTCCAGCAACACTTTTCCCTGCACGGTGTGTGACACACAATTTAAAACGCTTgccaattatgaaaaacacTTAAAGATCTATAATACGGGCAAACAGGAGGTTTGCAAGTTCTGCAACAGCTCGTTTCCCTCGAAACAGCAGCTTCACAGCCACATTAGTTTGACTCATGTTAACTTCAAAGCTCAGGCTTATCATTGTCCTATCTGCAATCAGGGATTCAACAAGAAGACTTCATACCGTATGCACCTGAAGCATATCCATGCGAGCAATCACCCCGTTGGGGTAGAGACGATCTTTGTTACCGAGACTGATCCGTTTGACAATCTGAGATGCGAGATTTGCAAGATGGCGTTCGATAGTAGGGAAGAGATGAAGGCACACCGCAAGTTTTACGATCCGTTGGTCATCCTGTCTTGCGCGAGTTGCAAGATGGAGTTCCAAGGTGACTTTGCTCTAACACAACATAACAAGATGATCCATCCGGGACAGTCGCTCTACTACACTTACAACTGCAACATCTGTGGCGAGGGATTTGCCAACGACAACGAGCTGAATTCTCATATGTTACACGTGCATGCTTGGGCATCGGGCGATGTTTGTAACCAACAAACACTCGCGATGGAGGTTGAGGCCCATTCGTTCAGTGACAATTTAGCCACAGGGGTGTACGTCTGCGTCACCTGCAAAATGACCTTTCTAGATTTAGAGGGCCTCAGATTGCACAGGGATGAGTTCATAGACGACGGGGATCACCAGTGTCACATGTGCTACAAGAAGTACAAAACCATGGAGCTTCTTGACTCGCACCTTCAGCTCACCCACATGCCTGTCAACAACATGGTCACTTTCAAGTGCCAGCTATGCGGGGAAGTTTACCTCAGTGCCATCTCTCTCAGTTGCCACGAGAAGCACTTTCATCCTCTTGAGTTTCCGCTGAACGATTCGGAACGGGTGGAGCAGAACCAGTTAGACAAAAACCAGATTGGCTTGAACCCGGTTGACAAGAACGAGACGGAACTGAACCAAGTTAGCAGAATCTCTGCTTTTACAACCTCGGTCTCGACGATCGTCAATACCGTGGTCGCGGACCCACCACTATTGGATAGGGTCCAAGATGTcggaaaaaataacaaaaatgcctTCAAGTGCAACGGTTGCAAGCTCAGCTTCGCCGACAAGATCAGTCTCGAGTATCACAGACTGGAGTACGATAATCAGGGCGAATATGAGTGCAACATCTGCAAGAGGAAGTTTCAGGTGGCTCAGCATTTGCAAGCTCACAAAGAGAAGCACAATCAGGGGGTGCACTACAACTTGAGGTGTGGTGTCTGCTCGGAGGGATTCAGCGCGTCGTCATTCCTCTTCATGCACGTCGGCCATCTTCACGGACTCGAAGAACTGAAGAAGGTCCTCCAGCGGATGTCCTCGAAGAAAGACGCAAGGCCCACCCAACGTAACTTCAGCATCGAGCTTGATGACAAGACCATCCACGAGGTCAGGATTTCAGTGAACAAAAACCTTCTGGACAGCAAGTTCCTCAAACAGATCATCGTTGAAGCGTTCACCGACTTCTCCGCGGAGTTCCCACAGACCTCGTGTAGCTACGACTTTCAGTGTCGCGTGTGCAAGCTGGTGTTCAACAGCCAAGCTAACTTGAACAAGCACCTGATTAGATACCTCAAGGAAGACGAATACGCGTGCAAATTATGCGACAAAAAGTTCCGATGGGTGGCAAACGTGGAGGACCATCGCAGGAAGCACTTCAACATAACTTGCACCAACGTCTTCACCTGTCCTATATGCTTTGAACGCTTTGTTACGAACATCTCTCTGTATGCTCACAAAGCCCACTTCCACGACCGGGTCCTCAATATGAACCGTCAGATGACCCTGATTCTGGAAGAGGACCTCAAGTATCCTGTTCGGGACACTGGCGATTCCGTCCCGGAATCTTTGAATAACGAAACTCACACAAATGGAATTCTAGATGCACAGGGAATAGGCGCAACCGCACCGGATGAACATCAAACCAAACAGTTCACCTGTAGGATATGTTACGCCACGTTTGGCAACGAATCCAACATGATGAGCCATGTTGTGGCCAGCCACTCGGAGCAACCTGAATCGGACCAGACAGCCTTGGCCCTGTGCGAGACCAGTTTGAACAACTACTTCCTCTGCAGTGGTTGCCAGACTGTGTTCGGGTCGTTGCAAGACCTCGAGACTCATGAGAAAACTTGTTCCAAGTTCAAATGTAGGGAATGCGACAGGATTTTCAAGACAGATATGCAACTCAAATCTCATAAGGAAACTGTTCACAGGTCCAGGCAAGAACAGGATCTGAAACTGCCAACGAAGGAAAATACAATTGCTGAGGAACTTGCAAGCAAAGATACAGGTACCTCTCCAAACAAACAGACTGAAGACAGGGTGGGCAAATTGAAAGTCAGATCCTTCGCCAAGCTTCTTGATGATCAGGATAGTAGCAACTCTAGTCCAGATTCAAGTCGGGATTCAGTCATTGCTTATGCCCAAAGGTCTTCGAATTCAAATATCCTTAAGAAGGTCCTTGAAAAGAACCCTGTGGCGGTCCGCAAACCTGCTCAACATCCGGAAGAGGTGGAATCACGTCAACCCATACATGTGAGCAACAATGCTCTAAGTGGAAAGAGGCTGATTATCACTTGGGACAACATCTACAAGCTAGTCAAATCTACGCCGAATAGTTATGTCGATGACCTCAAGTCCCGGATCCATCCAACCGGCATAAGCGTTGCTTTTGAGTGCAAGATCTGTCGGTTGTTGTTCCTTGACGAGAGAAGCCTCGCCGCTCACATGATAAGACAGTGCTGGGAGAACAGATGTTTTGTCTGCAGCAGAACCTTTGAGAACTCCTGTACTGTCCTCAGGCACATCGAGACCCACCAGGAGATTGTATGCCAAGTTTGCGCTGGAGTCTTTCTCGACTCCATCAGTTTCAACTATCATGTGTTACAGTGCATCGAGCAGGTCAAGACCGACTGCTTCAAGGTCTCTGAGGAGATGCACCTCACCAGGGCTCACCTCAAAGAACTTAAGGAAATCATCTGCGGTCTCTGCAgagacaatttcaaaaacattgaaaacgcCACGGTCCACCTCAAGTTAACCCACTGCGTCTACAAGTGCGGCATCTGCCAAGCCAAATTTTATGGCAAGAATATTCTTCAGCAGCACATAAAGAGCAACCATTGTAATGCGCCACAATTCGGCATTAGATTTTGTGATCGTTGTAATACCGGACATGCGAACTTTGATGGATTCAGCAAACATGTCTGCGTACCATCAAcctaa
- Protein Sequence
- MLCRPGEDGEFTSHHTFIIKNGLQQVTVNAPLLFNIYTCELPRMFGLNKPGQGKAIALADDLLLYFHGEKVPKPTLPLHNESLQFTSEYEDSDSNQIIYQTRKRKMDKTEENTSTNKMSRFVEEETYRCKLCRHVFSTHMNLRRHMQNMSNAGIHHCSICNLRYNDVRRYQTHNKNAHGSSNFNFQCDFCKENFMNKSMLAAHVVHYHLDSKKSETPESSKPETSKLKPMIFLQNIIPASSNPSSVPTPGSTKSSPPKQRQSKLTDFLIRKSPNLPVAQPGPKSMKRAAFKRSEENLRTLNYFISVSKNRSDPKYDSYLAECFDCRPCSVSLERVDLVKRPIKIGKVYYYKGVPFRSPRVVLGERLHDLSVSTALDDFISSNLEIPSSFSSIFTCKVCGQELDTFERLEYHIRFRHTVYASSICSARFTSMKKLSAHYVQKHRAQGTYECSICAENPGNYSELRKHYKIHCIAIDDIDVVDKTTIDLNSDCQQKNRALICVCGSSQPTKSSYKLHQKSCREWLKIRTAARKSVGLPQMPQESKKLDPPEMLESAVVKLEKLSPLKNMPPFVRSSSPPSSPEVIGQFPNSAPPSPPPPPPPPPPPPPPPPPPPLPPPPEVTFDEVRTEFVSVDDYAETDLVSDSPPPDSLSTLQYVSLSDTQTHHSSNTFPCTVCDTQFKTLANYEKHLKIYNTGKQEVCKFCNSSFPSKQQLHSHISLTHVNFKAQAYHCPICNQGFNKKTSYRMHLKHIHASNHPVGVETIFVTETDPFDNLRCEICKMAFDSREEMKAHRKFYDPLVILSCASCKMEFQGDFALTQHNKMIHPGQSLYYTYNCNICGEGFANDNELNSHMLHVHAWASGDVCNQQTLAMEVEAHSFSDNLATGVYVCVTCKMTFLDLEGLRLHRDEFIDDGDHQCHMCYKKYKTMELLDSHLQLTHMPVNNMVTFKCQLCGEVYLSAISLSCHEKHFHPLEFPLNDSERVEQNQLDKNQIGLNPVDKNETELNQVSRISAFTTSVSTIVNTVVADPPLLDRVQDVGKNNKNAFKCNGCKLSFADKISLEYHRLEYDNQGEYECNICKRKFQVAQHLQAHKEKHNQGVHYNLRCGVCSEGFSASSFLFMHVGHLHGLEELKKVLQRMSSKKDARPTQRNFSIELDDKTIHEVRISVNKNLLDSKFLKQIIVEAFTDFSAEFPQTSCSYDFQCRVCKLVFNSQANLNKHLIRYLKEDEYACKLCDKKFRWVANVEDHRRKHFNITCTNVFTCPICFERFVTNISLYAHKAHFHDRVLNMNRQMTLILEEDLKYPVRDTGDSVPESLNNETHTNGILDAQGIGATAPDEHQTKQFTCRICYATFGNESNMMSHVVASHSEQPESDQTALALCETSLNNYFLCSGCQTVFGSLQDLETHEKTCSKFKCRECDRIFKTDMQLKSHKETVHRSRQEQDLKLPTKENTIAEELASKDTGTSPNKQTEDRVGKLKVRSFAKLLDDQDSSNSSPDSSRDSVIAYAQRSSNSNILKKVLEKNPVAVRKPAQHPEEVESRQPIHVSNNALSGKRLIITWDNIYKLVKSTPNSYVDDLKSRIHPTGISVAFECKICRLLFLDERSLAAHMIRQCWENRCFVCSRTFENSCTVLRHIETHQEIVCQVCAGVFLDSISFNYHVLQCIEQVKTDCFKVSEEMHLTRAHLKELKEIICGLCRDNFKNIENATVHLKLTHCVYKCGICQAKFYGKNILQQHIKSNHCNAPQFGIRFCDRCNTGHANFDGFSKHVCVPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493831;
- 90% Identity
- -
- 80% Identity
- -