Basic Information

Insect: Trissolcus japonicus
Gene Symbol: PRDM10
Assembly: GCA_030522925.1
Location: JAPYZS010000920.1:5112-9122[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.9e-07 7.6e-05 23.5 1.7 1 23 493 515 493 515 0.98

2 13 0.53 58 5.0 7.3 1 23 523 546 523 546 0.97

3 13 0.028 3.1 9.0 0.4 2 23 564 585 563 585 0.96

4 13 0.01 1.1 10.4 0.0 3 23 598 618 596 618 0.94

5 13 0.13 14 6.9 4.4 1 23 633 655 633 655 0.91

6 13 0.013 1.4 10.1 1.6 2 23 664 685 663 685 0.96

7 13 0.00055 0.06 14.4 0.2 1 23 692 714 692 714 0.98

8 13 0.0062 0.68 11.1 3.3 1 23 721 743 721 744 0.95

9 13 0.0035 0.39 11.9 2.8 1 23 749 771 749 771 0.98

10 13 6.5e-05 0.0072 17.3 4.4 1 23 777 800 777 800 0.96

11 13 0.0018 0.2 12.8 1.7 1 23 833 856 833 856 0.97

12 13 9.1e-05 0.01 16.9 2.5 1 23 878 901 878 901 0.97

13 13 0.0041 0.45 11.7 3.4 3 23 939 960 939 960 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.9e-07	7.6e-05	23.5	1.7	1	23	493	515	493	515	0.98
2	13	0.53	58	5.0	7.3	1	23	523	546	523	546	0.97
3	13	0.028	3.1	9.0	0.4	2	23	564	585	563	585	0.96
4	13	0.01	1.1	10.4	0.0	3	23	598	618	596	618	0.94
5	13	0.13	14	6.9	4.4	1	23	633	655	633	655	0.91
6	13	0.013	1.4	10.1	1.6	2	23	664	685	663	685	0.96
7	13	0.00055	0.06	14.4	0.2	1	23	692	714	692	714	0.98
8	13	0.0062	0.68	11.1	3.3	1	23	721	743	721	744	0.95
9	13	0.0035	0.39	11.9	2.8	1	23	749	771	749	771	0.98
10	13	6.5e-05	0.0072	17.3	4.4	1	23	777	800	777	800	0.96
11	13	0.0018	0.2	12.8	1.7	1	23	833	856	833	856	0.97
12	13	9.1e-05	0.01	16.9	2.5	1	23	878	901	878	901	0.97
13	13	0.0041	0.45	11.7	3.4	3	23	939	960	939	960	0.98

Sequence Information

Coding Sequence: atgaaatatgtgGAGTACGGGGAAGACCAAGCCCGTGACTACAATAGGATGTTTTCATCTTTCGAGCCCATCCCCTTTTCCTCCAGGGCGTCGTCTCCCTTATCAGACTTTGAGCACCGAGTCAGTCCCCACGATCCCAATATGAGCTCGGCTGCGCGGTACTCGCCAACTCCGGTGCAACTTCCTCCATCACCTTATCACAATTCCGTGGTGATTCTGCAAGGATCTTCGTTGCCGCTTATCTCAACATCTGAACCTACTACTCGACCAAGCGTCAACTACATCTCGCAACTTTCTGAATCTACACCTTCCCAAACCATTCCACCGGCGGATGACAATACAAGCTTTGACGATGGTACCAACGATGAAAACATTGTATCGTGTGTCGAGGGAGAACTAATTTTAATGCCAGCTACAAATACAGATTTAGAAACTTCTTCAACTCCTTTGATGTTAACTGAGATCCCAGGTCCAGATTTTGCATTGACAAGAGATTTCTTGGTGATGCAAGACGAACAGATCAATATAGTAAACTCGTTTAAAAACCCCAGTCCCGAATTGACCAATGAACAAAATGGTGTGATGTCCGAAATATCTAATAATAATGTTACACAAGAACCTGACTCCGAACCTGTTAGTAAGATTGATGAGAAGATTAATTTAAACGGTGATGAATTTCTGCATAAGGATATCCAGGAAGACgacgataataattttaatgataaagaTGGGTCGCATAAGAAACCCTTCTgGTGTAATGAGTGTGAAAGTATTTGCGTCAATGTTGGTGGTTGTATAGCTCACAACGTTCGGGCCATTGCAGATCAGCCGGTACCTGCGAGAGCTATAGCCACTTTGCCTAATTCTTATCTGGCGATTACCAAGTTACCCCCATCGGGTATATTAGAGGGTGGTTTTGAATACGCGATCTTTGCTAAACGTACGATCAAAAAAAGGACCCAGTTTGGCCCCGTTGAGGGCATTTTTTGTGACTACGATGGTTCTCCGATCAATAAGAATAATCTACCTTTGctttttgaaaaagagaatGGAACTATGATAAGAGTTGATGTCTCCAATGAAAACGCTTCAAATTGGATGCGTTTTGTGAGACCTGCTACAACGTACGAGGAACAAAACTTAGTGATCTGCCAACAAAATGATGGCATTGTATTTTTGACTGTCAgagatatttttgcaaaagaagAATTGAGGGCAGGCCCTCATCCTGATTACGCACATCGTCGAAACTTGCCTATTCTTAAACCAGCagataaacttgaaaaagaaTTGGTAAATGGAAGCATGGATTCTTGGTTGTGTGATAAAAACGACACAAATTTTCTAGACGACTTGAATATAGATCAGCCGCTCGAGATCAATGAGGACAGAGTTGAAAATGGAAAGGGTAAACGGAAAAAGAGCAAACATTCCTCTAaGAAATTCTTTAAAGTTGTGGATGGTCAGACGTTGCTTTACACGTGCCCGCACTGTCTTAAAGTGTTTCCTCGCAGCTACAGCTTGAAACGCCACTTGTTGATCCATCCAGACGCAAAAGTTCCGCACTACGAATGCTCAAAGTGTAACGAGAGTTTTTTGCATCCACACACGCGCAATCGCCACGTCAAGATGTGTCACAGTGCGAGTGCGAAGGAAAAAGAGAACTCGCGACAGAATCCTAACGAATGGAAATGCTCGTTTTGCTCACTTGCATTTCGCAAAATTGCCCTCCTCGAGTTGCATCAATTTTCGCATCCCCCTAAGAGGGATGGGGTTAACAAAGCCACAATCTGTCCCCAATGTGATATCGCTTTTGATAAGCCGAACGAGCTTGTGATGCATGTCGCACAACACGCGACACCATCCTCAAAGAGAAACGGAAATAATTTAGCTCCCTTCAAGTGTTCCAGATGTTACAAACGATTTGCTACGAGAATTCGATTACAGCAACACTGTTTGGTGCACGGCGCTGAAGAACAAAAACCACTGCCATGTGACATTTGTCTAAAAAGGTTTATGAACAATTCTGCTTTGTCCTGTCATCTGAAAACTCATCGAAaagaGAAGCAAACTTTTGAGTGTCCAATGTGTCGCAAACAATTCGACCAAATTTTGCTCTTGAAAGATCACATTGAAACGCATCGCAACGAAGACGACACTTTCGATTGCCCACACTGCCTCAGAACGTTTGTGAAGTACTCTGTTATTCGCAAACATATCCGAGCTCATCATTGCGAACGGACTCACAAGTGTCAGTTTTGTGCCAAGCGTTTTCCAACTGTCGACAAGCTGCGGATGCATCTGTTGCGACATTCCGACTACAAGGAATTTCATTGTGCAAATtgtgataaacaatttaaaagaaaagacaaattGAAAGAGCACATGACCAGGATGCACACCACTGAAAGGATGAATAAAGATAAGGCACTGCAGGGGAACCAAGCTAAAAAATTTGTGCCAAAAGTAAACCCAACAGACTATAATCGATTCGTTTACAAATGTCATCAGTGTTTAGTTGGTTTCAAACGAAGAGGAATGCTGGTCAACCACTTGGCTAAAAGACACCCGGAAGTTTCTCCTGACTCCGTACCGGAATTAAATTTGCCTATTTTGAGACAGACCAGGGActatttttgtcaatattgtgataagGTTTACAAAAGCAGCAGCAAAAGGAAAGCACAtatcatgaaaaatcatcCAGGTGCAGCTTTGCCTCCGAGTAACCGACAAAAAGAAACCGATATTCCGGGTCTACTTAATTCAACTTTCAGTCAAACTGTTGGCAGTATCACAACAACCCCACAAGGATGCCAGTGGTGTCACAAACAATATGCTAGCAAAgCCAAATTGCTGCAACATCAACGCAAGAAACATGCGATGCTAATGGAACCAGCGGACCAAATTCCTCGACCACGTAACCGAGCTTCTCATAATCAAAACGCCCCAGTTTTAACCGGTGATACAATAATTGTAACCGACTACATGTCGGATTCGAAcgattttcttaaacaaaaagtaatcaaAATGAACGACCAGATGAAATTAGTCAGTGCGTCTGACGGTTTGCGTTGA
Protein Sequence: MKYVEYGEDQARDYNRMFSSFEPIPFSSRASSPLSDFEHRVSPHDPNMSSAARYSPTPVQLPPSPYHNSVVILQGSSLPLISTSEPTTRPSVNYISQLSESTPSQTIPPADDNTSFDDGTNDENIVSCVEGELILMPATNTDLETSSTPLMLTEIPGPDFALTRDFLVMQDEQINIVNSFKNPSPELTNEQNGVMSEISNNNVTQEPDSEPVSKIDEKINLNGDEFLHKDIQEDDDNNFNDKDGSHKKPFWCNECESICVNVGGCIAHNVRAIADQPVPARAIATLPNSYLAITKLPPSGILEGGFEYAIFAKRTIKKRTQFGPVEGIFCDYDGSPINKNNLPLLFEKENGTMIRVDVSNENASNWMRFVRPATTYEEQNLVICQQNDGIVFLTVRDIFAKEELRAGPHPDYAHRRNLPILKPADKLEKELVNGSMDSWLCDKNDTNFLDDLNIDQPLEINEDRVENGKGKRKKSKHSSKKFFKVVDGQTLLYTCPHCLKVFPRSYSLKRHLLIHPDAKVPHYECSKCNESFLHPHTRNRHVKMCHSASAKEKENSRQNPNEWKCSFCSLAFRKIALLELHQFSHPPKRDGVNKATICPQCDIAFDKPNELVMHVAQHATPSSKRNGNNLAPFKCSRCYKRFATRIRLQQHCLVHGAEEQKPLPCDICLKRFMNNSALSCHLKTHRKEKQTFECPMCRKQFDQILLLKDHIETHRNEDDTFDCPHCLRTFVKYSVIRKHIRAHHCERTHKCQFCAKRFPTVDKLRMHLLRHSDYKEFHCANCDKQFKRKDKLKEHMTRMHTTERMNKDKALQGNQAKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPEVSPDSVPELNLPILRQTRDYFCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKETDIPGLLNSTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHAMLMEPADQIPRPRNRASHNQNAPVLTGDTIIVTDYMSDSNDFLKQKVIKMNDQMKLVSASDGLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493101;
90% Identity: iTF_01493101;
80% Identity: -