Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: PRDM10
Assembly: GCA_030523145.1
Location: JAQQRF010000100.1:89046-93023[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.4e-07 7.1e-05 23.5 1.7 1 23 495 517 495 517 0.98

2 13 0.49 54 5.0 7.3 1 23 525 548 525 548 0.97

3 13 0.026 2.9 9.0 0.4 2 23 566 587 565 587 0.96

4 13 0.0095 1.1 10.4 0.0 3 23 600 620 598 620 0.94

5 13 0.12 13 6.9 4.4 1 23 635 657 635 657 0.91

6 13 0.012 1.3 10.1 1.6 2 23 666 687 665 687 0.96

7 13 0.0012 0.13 13.3 0.2 1 23 694 716 694 716 0.98

8 13 0.0058 0.64 11.1 3.3 1 23 723 745 723 746 0.95

9 13 0.0033 0.36 11.9 2.8 1 23 751 773 751 773 0.98

10 13 4.4e-06 0.00049 20.9 2.5 1 23 779 802 779 802 0.97

11 13 0.0017 0.19 12.8 1.7 1 23 835 858 835 858 0.97

12 13 8.4e-05 0.0093 16.9 2.5 1 23 880 903 880 903 0.97

13 13 0.0038 0.42 11.7 3.4 3 23 941 962 941 962 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.4e-07	7.1e-05	23.5	1.7	1	23	495	517	495	517	0.98
2	13	0.49	54	5.0	7.3	1	23	525	548	525	548	0.97
3	13	0.026	2.9	9.0	0.4	2	23	566	587	565	587	0.96
4	13	0.0095	1.1	10.4	0.0	3	23	600	620	598	620	0.94
5	13	0.12	13	6.9	4.4	1	23	635	657	635	657	0.91
6	13	0.012	1.3	10.1	1.6	2	23	666	687	665	687	0.96
7	13	0.0012	0.13	13.3	0.2	1	23	694	716	694	716	0.98
8	13	0.0058	0.64	11.1	3.3	1	23	723	745	723	746	0.95
9	13	0.0033	0.36	11.9	2.8	1	23	751	773	751	773	0.98
10	13	4.4e-06	0.00049	20.9	2.5	1	23	779	802	779	802	0.97
11	13	0.0017	0.19	12.8	1.7	1	23	835	858	835	858	0.97
12	13	8.4e-05	0.0093	16.9	2.5	1	23	880	903	880	903	0.97
13	13	0.0038	0.42	11.7	3.4	3	23	941	962	941	962	0.98

Sequence Information

Coding Sequence: ATGTTCATTTTCCAGGTGGAGTACGTGGAAGACCAAGCCCGTGACTACAATAGGATGTTTTCGTCTTTCGAGCCCATCCCCTTTTCCTCCAGGGCTTCGTCTCCCTTATCAGACTTCGAGCACAGAGTTAGTCCCCACGATCCCAATATGAGCTCGGCTGCCCGGTACTCGCCCACTCCGGTGCAACTTCCTCCATCACCTTATCACAATTCTGTGGTGATTCTGCAAGGATCTTCGTTGCCACTTATCTCAACATCTGAACCTACAACTCAGCCAAGTGTGAACTATATCTCGCAGCTGTCTGAATCTACACCTTCCCAAACTATTCCACCTGCAGATGACAATACAGGCTTTGACGATGGTACCAACGATGAAAACATCGTATCATGTGTCGAGGGAGAACTAATTTTAATGCCAgCTACAAATACAGATTTAGAAACTTCTTCAACTCCTTTGATGTTAACTGAGATCCCAGGTCCGGATTTTGCATTAACAAGAGATTTCTTAGTGATGCAAGACGAGCAGATTAATATAGTAAACTCGTTTAAAAACTCAAATCCCGAATTGACCAATGATCAAAATGGTGTTATGTCTGAGATatctaataataatgatatacaAGAACCTGACTCCGAACCTGTTAATAAGATTgacgagaaaaataatttgaacggTGATGAATTTCTGCATAAGGATATCCAGGGAgacgataataattttaatgataaaaatgggtCGCATAAGAAACCCTTCTgGTGTAATGAGTGTGAAAGTATTTGCGTCAATGTTGGTGGTTGTATAGCTCACAACGTTCGAGCTATTGCAGATCAACCAGTACCTGCGAGAGCTATTGCCACTTTGCCTAATTCTTATCTGGCGATTACCAAGTTACCGCCATCGAGTATATTAGAGGGTGGTTTTGAATATGCGATCTTTGCTAAGCGTACGATCAAAAAAAGGACCCAGTTTGGCCCTGTTGAGGGCATTTTTTGTGACTACGATGGTTCTTcgataaataagaataatctACCATTGCTATTTGAAAACGAGAATGGAactatgataaaagttgatgtCTCCAATGAAAATGCTTCAAACTGGATGCGTTTTGTGAGACCTGCTACAACGTACGAGGAACAAAACTTAGTGATTTGCCAACAAAACGATGGCATTGTATTTTTGACTGTAAgagatatttttgcaaaagaagaATTGAGGGCAGGCCCTCATCCTGATTACGCACATCGTCGAAACTTGCCTATCCTTAAACCAGCGGATAAACTTGAAAAAGaATTGGTAAATGGAAACATGGATTCCTGGTTGTGTGATAAAAACGACACAAATTTTCTAGACGACTTGAATATAGATCAACCGCTCGAGATCAATGAGGACAGAGTAGAGGAAAATGAAAAGGGCAAACAGAAAAAGTGCAAACTTTCATCTAagAAGTTCTTCAAAGTGGTCGATGGTCAGACGTTGCTCTACACGTGTCCGCACTGTCTTAAAGTGTTTCCTCGCAGTTACAGTTTAAAACGCCACTTGTTGATCCATCCAGACGCAAAAGTTCCGCACTACGAATGCTCAAAGTGCAATGAGAGTTTCTTGCATCCACACACGCGCAATCGTCACGTCAAGATGTGTCACAGTGCGAGTGCAAAGGAAAAGGAGAACTCGCGACAGAATCCTAACGAATGGAAATGCTCCTTTTGCTCACTTGCTTTTCGCAAAATTGCCCTCCTCGAGTTGCATCAGTTTTCTCATCCTCCTAAAAGGGATGGAGTTAACAAAGCTACAATCTGTCCCCAATGTGATATTGCGTTTGATAAGCCGAACGAGCTTGTGATGCATGTCGCACAACACGCGACACCATCCTCAAAGAGAAATGGAAACAATTTAGCTCCCTTCAAGTGTTCCAGATGTTACAAACGATTTGCTACGAGAATTCGACTTCAGCAACACTGTTTGGTGCATGGCGCTGAAGAACAAAAACCACTGCCATGTGACATTTGTCTAAAAAGGTTTATGAACAATTCCGCTTTGTCCTGTCACTTGAAAACTCACAGAAAAGAGAAGCAAACTTTTGAGTGTCCAATGTGTCGCAAACAATTCGACCAAATTTTGCTCTTAAAAGATCACATTGAATCGCATCGTAACGAAGATGACACTTTTGATTGTCCACATTGTCTCAGAACGTTTGTGAAGTACTCCGTTATTCGCAAACATATTCGAGCTCATCATTGCGAACGAACTCACAAGTGTCAGTTTTGTGCCAAGCGTTTTCCAACTGTTGACAAGCTTCGGATGCATCTGTTGCGACATTCTGACTACAAGGAATTTCAATGTGCAAATtgtgataaacaatttaaaagaaaagacaaaCTGAAAGAGCACATGACGAGAATGCATACCACAGAAAGGATGAATAAAGATAAAACACTACAGGGGAACCAAGCTAAAAAATTTGTGCCAAAagTAAATCCAACGGACTACAATCGATTCGTTTACAAATGTCATCAGTGTTTAGTTGGTTTCAAAAGAAGAGGAATGTTGGTCAACCACTTAGCTAAAAGACATCCTGAAGTTTCCCCCGACTCCGTACCGGAATTAAATTTGCCTATTTTAAGACAGACCAGGGACTATTTTTGTCAATATTGTGATAAGGTTTACAAAAGCAGCAGCAAAAGAAAAGCACatatcatgaaaaatcatccaGGTGCAGCTCTGCCTCCTAGTAATCGACAGAAAGAAACTGATATTCCGGGTCTACTTAATTCGACTTTCAGTCAAACTGTCGGCAGTATTACAACAACCCCACAGGGATGTCAGTGGTGTCATAAACAATATGCTAGCAAAGCCAAATTGCTGCAACATCAACGCAAAAAACATGCGATGCTAATGGAACCTGCGGACCAAATTCCTCGACCACGTAACCGAGCTTCTCATAATCAAAACGCCCCAGTTTTAACCGGCGATAAGATAATTGTAACCGACTACATGTCAGATTCGAACGATTTTCTAAAgcaaaaagtaatcaaaatgAACGACCCAATGAAATTAGTCAGCGAGTCTGACGGACTGCGTTGA
Protein Sequence: MFIFQVEYVEDQARDYNRMFSSFEPIPFSSRASSPLSDFEHRVSPHDPNMSSAARYSPTPVQLPPSPYHNSVVILQGSSLPLISTSEPTTQPSVNYISQLSESTPSQTIPPADDNTGFDDGTNDENIVSCVEGELILMPATNTDLETSSTPLMLTEIPGPDFALTRDFLVMQDEQINIVNSFKNSNPELTNDQNGVMSEISNNNDIQEPDSEPVNKIDEKNNLNGDEFLHKDIQGDDNNFNDKNGSHKKPFWCNECESICVNVGGCIAHNVRAIADQPVPARAIATLPNSYLAITKLPPSSILEGGFEYAIFAKRTIKKRTQFGPVEGIFCDYDGSSINKNNLPLLFENENGTMIKVDVSNENASNWMRFVRPATTYEEQNLVICQQNDGIVFLTVRDIFAKEELRAGPHPDYAHRRNLPILKPADKLEKELVNGNMDSWLCDKNDTNFLDDLNIDQPLEINEDRVEENEKGKQKKCKLSSKKFFKVVDGQTLLYTCPHCLKVFPRSYSLKRHLLIHPDAKVPHYECSKCNESFLHPHTRNRHVKMCHSASAKEKENSRQNPNEWKCSFCSLAFRKIALLELHQFSHPPKRDGVNKATICPQCDIAFDKPNELVMHVAQHATPSSKRNGNNLAPFKCSRCYKRFATRIRLQQHCLVHGAEEQKPLPCDICLKRFMNNSALSCHLKTHRKEKQTFECPMCRKQFDQILLLKDHIESHRNEDDTFDCPHCLRTFVKYSVIRKHIRAHHCERTHKCQFCAKRFPTVDKLRMHLLRHSDYKEFQCANCDKQFKRKDKLKEHMTRMHTTERMNKDKTLQGNQAKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPEVSPDSVPELNLPILRQTRDYFCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKETDIPGLLNSTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHAMLMEPADQIPRPRNRASHNQNAPVLTGDKIIVTDYMSDSNDFLKQKVIKMNDPMKLVSESDGLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493821;
90% Identity: iTF_01493821;
80% Identity: -