Tjap001831.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000046.1:216195-219247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.9e-05 0.0076 17.2 3.2 1 23 33 56 33 56 0.98 2 20 0.0004 0.044 14.8 2.9 1 23 62 84 62 84 0.95 3 20 0.012 1.4 10.2 3.5 1 23 90 113 90 113 0.96 4 20 0.0011 0.12 13.5 1.3 1 23 119 141 119 141 0.96 5 20 0.0012 0.13 13.3 0.4 2 23 147 169 146 169 0.95 6 20 0.0078 0.85 10.8 0.7 1 23 175 197 175 197 0.96 7 20 1.4e-05 0.0016 19.4 0.8 1 23 201 223 201 223 0.94 8 20 8.3 9.1e+02 1.3 0.3 1 9 228 236 228 241 0.89 9 20 0.0013 0.14 13.3 0.3 2 23 258 279 257 279 0.97 10 20 4 4.4e+02 2.3 2.8 1 23 318 341 318 341 0.91 11 20 0.11 12 7.2 2.0 1 23 347 370 347 370 0.95 12 20 0.1 11 7.3 4.3 1 23 381 404 381 404 0.97 13 20 0.00035 0.039 15.0 3.9 1 23 413 436 413 436 0.98 14 20 0.00098 0.11 13.6 1.7 1 23 449 472 449 472 0.97 15 20 0.0001 0.011 16.7 2.2 1 23 478 501 478 501 0.95 16 20 0.016 1.7 9.8 0.8 3 23 508 529 506 529 0.94 17 20 0.00082 0.09 13.9 0.4 1 23 534 557 534 557 0.97 18 20 3.9e-08 4.3e-06 27.5 0.7 2 23 564 585 564 585 0.97 19 20 2e-06 0.00022 22.1 0.5 1 23 591 613 591 613 0.98 20 20 8.6e-07 9.4e-05 23.3 0.2 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- ATGAATATTTTCGGGATCGATGGCAAAAATATGAAAGCAGAAACGCGAAAAGACGAGGGCGAAGATCGACCGGTCGCAATGGTGGGGGCCAACGAGTTCCGCTGCGAGCTCTGCAAAAAGACGTTCAATCAGAGGAACAAAATCGCTCGTCACATGAAGAGCAAGCACAGCTCGCGCCGACCGTTCGACTGCGAATTTTGCGACAAGAATTTCAAGTACAAGTGCGACCTGAATCTGCACCTCCTGGCGCACAAGAATGCCCCCTATCACACCTGCACCGTCTGTCCCTACCGCACTCGAATCAAAAACAATCTCAAGACACATTACATCCGAAAGCACACGACTGAATACACGTTCTCGTGCGAGCACTGCGGCAAGATGTTTAAGATCGAGTGGGacttgaaatttcatctgGCCACGCACGGCGAGGCGCAGATCATGTGCGACGTCTGCGGCAAATTTTATGCCAGCGATCACGCCCTCTACAAGCACAAAAAGGTCGCCCACTTGAACGTCTATGAGTTCAGTTGTTACGTCTGCAAAAAGAAACTGATGACCCAACAGAACTTGGACGCGCACTTGGCCCAGCATAGCCAGgtttttgattgcaaaatttgcgGCAAAGTGTTCGCCTTTAAGAAGTACCTCAAGTCGCACAGCGCGGTGCACGAAAATAAGCAGTTCATTTGTGAGTTTTGTAACAAgACCGGCAGTTTGTACGGACAGATATCGAAAGTTCGAAAAGTCGGCTCATTGAAAACGAAAGCCTGGACGTGTGAGATCTGCACGCTGCAATTCCCCATCGAGTCGATGCTGAAACGTCACAGATCGACGCACCGTCAGCGTGCTCGAAAAAGCTTCAAGAAGCCCAGTTTCGTGAAGAGCAAAACTCCCTCTCATGATTTCGCGGAGGATGAGAGCATCGAGACGAAGTGTGACGAGCTGCAGGATTACCACTGCGACAGGTGTGACTACCAAACGACTTTGAAAATCCTCCTGGACGCTCACTATGCACACAAGCACTCGACGGAGGAGTCCTTTGCGTGCTACATGTGCGAATTTGTGTGCCAGAGGAAGAGCGTCCTGTCGAACCACATAGCGAAGAAACACAGAGTGCAGAAGTCGCAAGAAGACGACTGTTACGCCTGCAGCCTCTGCGAGTTCAGGTGCGCCAAGAAGAACACCCTCTACTCGCACAGAAGACGTCAGCACATGCAGCAGACCGAGACGAAGATCTACTCCTGCAAGGAGTGCGGTTTCAAGACGAGCAAGAGGAGCTCGCTGTACTCGCACCAGAAGCGCAAGCACAAAATCTACAACTCGAACGGCGAGGAGCAAGAGTTGTTCAGTTGCAACGAGTGCGATTACAAGAACAAGAACAAGTACGAGCTGAAGATCCACATGGCGCGCAAGCACTCGCTCGATTTTCAATTCTCCTGCGAGTTTTGCAGCAAGAAGTTCAAGGTCAAGGGCGACCTGACGAACCATGTTAGGTTCACTCACACGGAGCAGCCGGTCATCTGCGACGTCTGCGGCAAGACGTGTCTCAACAGCAACTCGCTTTACGTTCACCAAAAGTTCGCCCACTACAAGGCCAAGTACGAGTGCCAGATCTGCAAGAGACGGATGGTCACGCAGGAAAATTTGGACGAGCACATGCTCAGACAGCACGAGCAGAGGGAAAACGCGGTCTGCGAGGAGTGCGGCAAGACCTTCTCCAGGAACAGCAGGCTCAAAATCCACATGAGGATTCACACGGGTGACAAACCGTACAGCTGCACGGTCTGCGACAAGAATTTCGCCAGGAGGAACGCGCTCAAGCAGCACCTGCTGATCCACACCGGACAGAGACCTTACATCTGCGACATCTGCGGCAAGGCTTTCACCCAGAAGCCGGGGCTTATCAGTCATAGGAAGTCGCACCCGGGATCGCACCCGCCATTGCCGAGGGTCCTCATAGACCACATCCTGTGCGACGTGATGCCGAGCTAA
- Protein Sequence
- MNIFGIDGKNMKAETRKDEGEDRPVAMVGANEFRCELCKKTFNQRNKIARHMKSKHSSRRPFDCEFCDKNFKYKCDLNLHLLAHKNAPYHTCTVCPYRTRIKNNLKTHYIRKHTTEYTFSCEHCGKMFKIEWDLKFHLATHGEAQIMCDVCGKFYASDHALYKHKKVAHLNVYEFSCYVCKKKLMTQQNLDAHLAQHSQVFDCKICGKVFAFKKYLKSHSAVHENKQFICEFCNKTGSLYGQISKVRKVGSLKTKAWTCEICTLQFPIESMLKRHRSTHRQRARKSFKKPSFVKSKTPSHDFAEDESIETKCDELQDYHCDRCDYQTTLKILLDAHYAHKHSTEESFACYMCEFVCQRKSVLSNHIAKKHRVQKSQEDDCYACSLCEFRCAKKNTLYSHRRRQHMQQTETKIYSCKECGFKTSKRSSLYSHQKRKHKIYNSNGEEQELFSCNECDYKNKNKYELKIHMARKHSLDFQFSCEFCSKKFKVKGDLTNHVRFTHTEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVTQENLDEHMLRQHEQRENAVCEECGKTFSRNSRLKIHMRIHTGDKPYSCTVCDKNFARRNALKQHLLIHTGQRPYICDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILCDVMPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493047;
- 90% Identity
- -
- 80% Identity
- -