Tbro009294.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000419.1:39146-41993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00038 0.042 14.8 2.6 1 23 29 52 29 52 0.95 2 21 0.001 0.12 13.4 4.4 1 23 58 80 58 80 0.96 3 21 0.011 1.2 10.2 3.4 1 23 86 109 86 109 0.96 4 21 0.001 0.11 13.5 1.3 1 23 115 137 115 137 0.96 5 21 0.0012 0.13 13.3 0.4 2 23 143 165 142 165 0.95 6 21 0.0076 0.84 10.7 0.7 1 23 171 193 171 193 0.96 7 21 1.4e-05 0.0015 19.3 0.8 1 23 197 219 197 219 0.94 8 21 3.2e-07 3.6e-05 24.5 3.1 1 23 224 246 224 246 0.98 9 21 0.011 1.2 10.2 0.5 1 14 252 265 252 266 0.91 10 21 0.0017 0.19 12.7 0.1 2 23 288 309 287 309 0.96 11 21 7.3 8.2e+02 1.3 3.7 1 23 348 371 348 371 0.91 12 21 0.1 12 7.1 2.0 1 23 377 400 377 400 0.95 13 21 0.068 7.6 7.7 4.3 1 23 411 434 411 434 0.97 14 21 0.00034 0.038 15.0 3.9 1 23 443 466 443 466 0.98 15 21 0.00095 0.11 13.6 1.7 1 23 479 502 479 502 0.97 16 21 8.5e-06 0.00094 20.0 1.6 1 23 508 531 508 531 0.95 17 21 0.015 1.7 9.7 0.8 3 23 538 559 536 559 0.94 18 21 0.0008 0.089 13.8 0.4 1 23 564 587 564 587 0.97 19 21 3.8e-08 4.2e-06 27.4 0.7 2 23 594 615 594 615 0.97 20 21 2e-06 0.00022 22.0 0.5 1 23 621 643 621 643 0.98 21 21 8.3e-07 9.2e-05 23.2 0.2 1 23 649 671 649 671 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATGGCAAAAATATGAAAGCAGAATCGCAAAAAGACGTGGCCGAAGATCGACCGGTCGCAATGGTGGGGGCCAACGAGTTCAACTGCGAGCTCTGCAAAAAGACGTTCAATCAAAGGAACAAAATCCTTCGTCACATGAAGGGCAAGCACAGCTCGCGCCGACCGTTTGActgcaaattttgcaacaagaaTTTCAAGTACAAATGCGATTTGAATCTGCACCTTCTGGCGCACAAGAATGCCCCCTATCACACTTGCACCGTTTGTCCCTACCGCACTCGGATCAAAAACAATCTCAAAACACATTACATCCGAAGGCACACGACTGAATATACATTCTCGTGCGAGCACTGCGGCAAGATGTTTAAGATCGAGTGGGACTTGAAGTTTCACCTAGCCACGCACAGCGAGGCGCAAATCATGTGCGACGTCTGTGGCAAATTTTATGCCAGCGATCACGCTCTGTACAAGCACAAAAAGGTCGCCCACTTGAACGTCTACGAGTTCAGTTGTTACGTCTGTAAGAAGAAACTGATGACCCAACAGAACTTGGACGCGCACTTGGCGCAGCACAGTCAggtttttgattgcaaaatttgcggCAAGGTGTTTGCTTTTAAGAAGTATCTCAAGTCGCACAGCGCGGTGCACGAAAATAAACAGTTCGTTTGTGAGATTTGTAACAAGTGTTTCAGAACTAATAGCGTGCTGAGGAATCACATGTCCACGCACTCGACTGAAAAACCTTTTGTATGTGACGTTTGTGGGAGGATGTTTAAGAGGAGGAAGACCAGCAGTTTGTACGGACAGATATCAAAAGTTCGAAAAGTCGGCTCATTGAAATCGAAAGTCTGGCCGTGTGAGATCTGCACGCTGCAATTCCCCATCGAGTCAATGCTGAAACGACACAGATCGACGCACCGTCAACGGGTACGAAAAAGCTTGAAGAGGGCCAGTTGCGCGAGGAGCAAAACTCCCTCTCGTGATTTTGAGAAGGAGGACACCGTTGAGACCAAAAGCGATGAACTGCAGGATTATCACTGCGACAGATGCGACTATCAAACGACGTTAAAAATCCTTCTGGACGCTCACTACACGCACAAGCACTCGGCGGAGGAGTCCTTTGCATGTTACATGTGCGAATTCGTGTGTCAGAGAAAGAGTGTTTTATCAAACCACATAGCGAAGAAGCACAGAGTGCAAAAGTCTCAAGAAGACGACTGTTACGCCTGCAATCTTTGTGAGTTCAGATGTGCCAAGAAGAACACCCTCTACTCGCACAGAAGACGTCAACACATGCAGCAGACCGAGACGAAGATCTACTCCTGCAAGGAGTGCGGTTTCAAAACTAGCAAGAGGAGCTCGCTCTACTCGCATCAGAAGCGTAAGCACAAGATCTACAACTCGAATGGCGAGGAACAAGAGCTGTTCAGTTGCAACGAGTGTGACtacaagaacaaaaacaagtaCGAGCTGAAGATCCACATGGCGCGCAAGCACTCGCTCGATTTCCAATTCTCCTGCGAATTTTGTGGCAAGAAGTTTAAGGTCAAGGGTGATTTGACGAACCATGTCAGGTTCACCCACACGGAGCAACCGGTCATTTGTGACGTCTGTGGGAAGACGTGTCTCAACAGCAACTCGCTTTACGTTCATCAGAAATTTGCCCACTACAAAGCCAAGTACGAGTGCCAGATCTGTAAGAGACGAATGGTCACGCAGGAAAATTTGGACGAGCACATGCTCAGACAGCACGAGCAGAGAGAAAACGCGGTCTGCGAGGAGTGCGGCAAGACCTTCTCCAGGAACAGCAGACTCAAGATCCACATGAGGATCCACACGGGTGATAAACCCTACAGCTGCACGGTTTGCGACAAGAATTTCGCCAGAAGGAATGCCCTCAAGCAGCACTTGTTGATCCACACCGGACAGAGACCTTACATCTGCGATATCTGCGGCAAGGCTTTCACCCAGAAGCCGGGGCTTATCAGTCACAGGAAATCGCACCCGGGATCTCACCCACCACTGCCGAGAGTCCTCATAGACCACATCCTCTGCGACGTGATGCCGAGCTAA
- Protein Sequence
- MEDGKNMKAESQKDVAEDRPVAMVGANEFNCELCKKTFNQRNKILRHMKGKHSSRRPFDCKFCNKNFKYKCDLNLHLLAHKNAPYHTCTVCPYRTRIKNNLKTHYIRRHTTEYTFSCEHCGKMFKIEWDLKFHLATHSEAQIMCDVCGKFYASDHALYKHKKVAHLNVYEFSCYVCKKKLMTQQNLDAHLAQHSQVFDCKICGKVFAFKKYLKSHSAVHENKQFVCEICNKCFRTNSVLRNHMSTHSTEKPFVCDVCGRMFKRRKTSSLYGQISKVRKVGSLKSKVWPCEICTLQFPIESMLKRHRSTHRQRVRKSLKRASCARSKTPSRDFEKEDTVETKSDELQDYHCDRCDYQTTLKILLDAHYTHKHSAEESFACYMCEFVCQRKSVLSNHIAKKHRVQKSQEDDCYACNLCEFRCAKKNTLYSHRRRQHMQQTETKIYSCKECGFKTSKRSSLYSHQKRKHKIYNSNGEEQELFSCNECDYKNKNKYELKIHMARKHSLDFQFSCEFCGKKFKVKGDLTNHVRFTHTEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVTQENLDEHMLRQHEQRENAVCEECGKTFSRNSRLKIHMRIHTGDKPYSCTVCDKNFARRNALKQHLLIHTGQRPYICDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILCDVMPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493768;
- 90% Identity
- -
- 80% Identity
- -