Tjap003114.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000088.1:362656-366866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.015 1.7 9.9 2.2 1 23 304 326 304 326 0.98 2 19 0.063 6.9 7.9 1.8 2 23 360 381 359 381 0.95 3 19 0.0005 0.055 14.5 3.7 1 23 430 452 430 452 0.96 4 19 0.0011 0.12 13.5 0.8 2 23 456 477 455 477 0.97 5 19 0.00038 0.042 14.9 1.8 2 23 515 536 514 536 0.96 6 19 7.1e-05 0.0077 17.2 1.3 1 23 540 562 540 562 0.97 7 19 0.0007 0.076 14.1 0.5 1 21 567 587 567 591 0.92 8 19 0.0013 0.15 13.2 2.4 3 23 671 691 669 691 0.95 9 19 4.2e-05 0.0046 17.9 3.8 1 23 746 768 746 768 0.97 10 19 0.00029 0.032 15.3 0.7 1 20 773 792 773 794 0.94 11 19 0.00078 0.086 13.9 0.4 2 23 805 826 805 826 0.97 12 19 3e-05 0.0033 18.4 0.6 2 23 865 886 864 886 0.97 13 19 2.7e-05 0.003 18.5 1.6 1 23 891 913 891 913 0.95 14 19 0.00015 0.017 16.2 2.8 1 23 919 941 919 941 0.98 15 19 4.8e-06 0.00053 20.9 0.4 1 23 957 979 957 979 0.95 16 19 3.9e-07 4.3e-05 24.3 0.6 1 23 985 1007 985 1007 0.99 17 19 4.2e-05 0.0046 17.9 0.2 1 23 1013 1035 1013 1035 0.97 18 19 0.00016 0.017 16.1 4.1 1 23 1041 1063 1041 1063 0.96 19 19 0.011 1.2 10.3 0.4 1 20 1069 1088 1069 1090 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGACGGTATAAATACGACGGAACCGCCGCAAACCGAGGATGATATCGTCGACGCGGTGCCGGTCTGTCGGATCTGCCTCATGACTAATCTGGTGATGCGCGACCTCTTCCACGAAAACGAGGTCACGTCACTGTCAACCAAGGCGATGAGTTTCGCAAACGTTAAGatgTCACCAGACGACGGGCTTCCCTCGCACATCTGCTGTGTCTGTGCTGATAAGCTCGAAATAGCCTATGACTTCAAACTGCAAGTCGAACAGGCCGACAGTGTTCTCAGAGAGAAATTTGACTCACTGAATATCAAAGGGGAATTGTTCTTCAACGACGTAGAGGTACATTTACACAATGTCAACCGATCTGGCAACAATTCCGAGCTCATGGAGGATGCCAATTACGTGCACGCCGACGAGTCCATCGAGGAGATGGAGAGGAATTCGCAAACTGGATTGCTCAAAGACCATTTGGCTTTGTtacaagtacaaaaaatgaacgatcAGTCCGACCAAATGTTACATAATGAGCAACAAGTTGTTCAGCAAACATTACACAAAAGTTATGCCAAGGTGGAGGAGATGAAAAACAGTGTCGGGGTGCCGCAGGAGTTCATGCCGATGGAAGAGGAGGACGCCGAAGGCACTGCACATATGAAAGAACCGTCGTTGATGATGGACTCGGAAAGCCGTGAGGATAAGATTGATGAATCTCACGAGGCCTCTGTCGAGTATCAGGACGAGAAGGATTTTGAAGTGAGTCAAGAGTTCGCCGAACAGGAGCAGGACGGCGACAAGTCCAAGTTGGAGCAGTCGGACCACGGGTCTGACGAGGAGAACTACTTCGAGAACTTGAACTTGAGTTcgcgattgaaaaaaatcaagactGAAAATTCGGAGAGGTTGTTTTTCGTTTGCTATCTGTGCGACAAGCAGTTCTTGTCCAAGGACGTTCTGAAGGAACACATGCACTCGCACGAGGAGATCAGGCAGGCGTTGTCCCTTAAGAAGAGCGTGGAGAAGACACCGAAGAGTAGCGTGCCGGCGAAGAGCCCGCCTTCAGGGAAACGAGCAAACAAATGTCCGCACTGCGGCAAGGAGTACCTCTACATCATCTCGTTCAATAAGCATTTGAAGCAGCACGAAAAGGAGAACAGCGAGTCCAAGGACAACGTGTCTCTAGACGCTTCGTATCACGAGGACGACGATTCCCTGCGGTTCTCTGGGTTTGACAATAATGACAATTCTGAGAGCGACAACGAACGCGACCAGGACAACGATGAGAGTCACACCTGCGATAAATGCAGCGAGAGCTTTGCAACAAAGAGGTTGTTGCAGAAACACAAAGTCAAACATATCGTACTGAAGTGTAACGTCTGCGAGGAAAATTTCGATACCCTGGACAAGCTGCGCGAGCACCGGTCCAAACACATCATCGAGGGAATTCTAACGGAGGACGACTTGAAGGAAGAGATGGAGGGTATTGAGATGATTGAAAAGGAGCAGGAAGAAGTGGAGAATGGGGACAGCGGAAAGAGCCTGAAATGTCCGCACTGCACGATGACGTTCGCTCGAAAGAAGCCGTTTGAGAGACATGTTGAAAGTCACGAGAGCAAATTCAGTTGTAAGATCTGCAGCCAGAAGTTCGGCAAGCAAGAGGCGCTTAAGAAGCACATGGAGCAGCACGCGAAGAAAAGTTTCAAGTGCACTCAGTGCAACAAGGTTTTTGGCAATGAGCTCACGCTGAGGAATCATCTGATTGCGACGAATCACAAAACTGTTATCTCGGGCCAGGAGTATGACCCAAATAAGCGCATCAAGCGTGTCGCCGCGAAAGCCGCGCAGAAGATCATCGACCGGATCAAGACGGAGAACGACTCCGACGAGGATGAAGAGGACACGGAAAAGTCGGaccatgaaaatgaaaatgataatgatgaaCTTTACGCGCCGCCTAAGGACGATCAGAGTCGATTGGTCAAGAAAGTGGCCGCGAAGAAGTCACTTGACTGCACTACGTGCAACAAAAAGTGTATCTCCAAACAGGCACTGATGAAGCACATGGAACTTCACGTTAAGGATGAGAAGAACGAGAAGGctgagaaaaatgataaacctAATGTTGCACCAGAACGGGAACCTGTGAAAGTAGAGGTCAAAGTTCCAGTTGCAGatcacGACAACGGCGACGATTCGGACGATTTTGAGAGCGGGTTAGACTGGCCGATGGACACTCACGAGTGTCCAACGTGCAAAAAGCGTTACAGCACAAAGAAATCTCTGCTGCGTCACCAGCTGTTGCACGAAGAGCCGAACTTTGAGTGCGACATCTGTAACGTCAAGTTTTATCGCAAGGACAAACTGAAGGCTCATTACGATAAGTGCTCCGAGAGGAACCCCGATCAAGTGCGCAAGTGCAACATCTGCGGGGacagttttgaaaacaacGAGATGCTGAAGGAGCATCGTGCCAAGCACGTATCGGAGGGCATCCTTACAGAGGAAGACCTCCGGGACATCGAACCACGAGCCGAAGACAAGAAACCTGGCGAGAAGGTGGCGCGCAAGCGCAGAACGGACATTGTCGGACTCGAGTGCACCGAGTGCAACAAGCAATACACTTCCCGGAAGGGTCTGCTGCGGCATATCCAGGTGCACGAGGGTAAGAAGTACCTCTGCGACATCTGTCCCAAGAAGTTTTACCGTCGCGAGCACCTGAAGATCCACGTGGCGAAGCACAACATGGTGAAGCCGTACAAGTGCACGCGCTGCACCAAGCGGTTCATCAAAGAGGAGCAGCTCAACAACCATCTGTCCAAGCACGACCGGTCGTTCAAGAAGAACAAGGAGACGGACAGCTCGAAGCGATTCCTTTGCGAGATCTGTTCCAAGAGCTTCACCCAGTCAACCACGTTGATCGCCCACCTGCGCGCACACAACGGCATCAAGCCGTACGTATGCGAGGTCTGCTCCAGGCCGTTCACAACGAACGCTTACCTGAAGATGCACATGCGCACGCACACTCAGGAGCGCCCTTACATCTGCCAGTACTGTTCGCGGGCGTTCGCACGAGCGGACACCCTGGCCAACCATCTGACGTCGCACACGGGCGAAGCCAAGTACCACTGCAAATACTGTCCGAAGAACTTCCGCCGACTGAAATCGTTGAAGGAGCACGTGTTCATTCATACGGGACAGAGGCCCTATGCCTGTCCCACCTGCGATCGTAGATTCAATAACAACGGGAGCAGGTATGCCCACAGCAAACGGTGCAAACAGAACCAACTGCAGAACCAAAACAGGGCCCAGGCCAGTCTCGCGCAGGTCCAGATCATACAGCAGCAGCCGGCTCAACAGACGCATGTGCAGACTCAGCCGCAGACCCACGTACAACAGCAGATTCAGATCCAGACCCAGCCGCAACTGCCCCAGCAGCTGCACCAAGCGAGGTTGCAGCCGACGCTCACACAGGCGCAGATCATCAAGTCACAGAACATCAAGACCATCACTATTGCAAGGCCCGCCGACCAGATCACCACACAGCAGGTCATGCagcatcaggagatcctgatgCCGCTCATCCTGCCGCTCACTGTCACCCTCGCCGACGTTGGTGAGGAAGTCATCCTGCCGGAAGGAACGAAGATTTTCACCACTACATAG
- Protein Sequence
- MDAVDGINTTEPPQTEDDIVDAVPVCRICLMTNLVMRDLFHENEVTSLSTKAMSFANVKMSPDDGLPSHICCVCADKLEIAYDFKLQVEQADSVLREKFDSLNIKGELFFNDVEVHLHNVNRSGNNSELMEDANYVHADESIEEMERNSQTGLLKDHLALLQVQKMNDQSDQMLHNEQQVVQQTLHKSYAKVEEMKNSVGVPQEFMPMEEEDAEGTAHMKEPSLMMDSESREDKIDESHEASVEYQDEKDFEVSQEFAEQEQDGDKSKLEQSDHGSDEENYFENLNLSSRLKKIKTENSERLFFVCYLCDKQFLSKDVLKEHMHSHEEIRQALSLKKSVEKTPKSSVPAKSPPSGKRANKCPHCGKEYLYIISFNKHLKQHEKENSESKDNVSLDASYHEDDDSLRFSGFDNNDNSESDNERDQDNDESHTCDKCSESFATKRLLQKHKVKHIVLKCNVCEENFDTLDKLREHRSKHIIEGILTEDDLKEEMEGIEMIEKEQEEVENGDSGKSLKCPHCTMTFARKKPFERHVESHESKFSCKICSQKFGKQEALKKHMEQHAKKSFKCTQCNKVFGNELTLRNHLIATNHKTVISGQEYDPNKRIKRVAAKAAQKIIDRIKTENDSDEDEEDTEKSDHENENDNDELYAPPKDDQSRLVKKVAAKKSLDCTTCNKKCISKQALMKHMELHVKDEKNEKAEKNDKPNVAPEREPVKVEVKVPVADHDNGDDSDDFESGLDWPMDTHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSERNPDQVRKCNICGDSFENNEMLKEHRAKHVSEGILTEEDLRDIEPRAEDKKPGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLSKHDRSFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNQLQNQNRAQASLAQVQIIQQQPAQQTHVQTQPQTHVQQQIQIQTQPQLPQQLHQARLQPTLTQAQIIKSQNIKTITIARPADQITTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493046;
- 90% Identity
- iTF_01493046;
- 80% Identity
- -