Tbro007207.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000272.1:155260-159462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 1.6 9.9 2.2 1 23 308 330 308 330 0.98 2 19 0.058 6.4 7.9 1.8 2 23 364 385 363 385 0.95 3 19 0.00012 0.014 16.4 4.6 1 23 434 456 434 456 0.96 4 19 0.00098 0.11 13.5 0.8 2 23 460 481 459 481 0.97 5 19 9.2e-05 0.01 16.7 1.9 2 23 519 540 518 540 0.96 6 19 0.00055 0.061 14.3 1.7 2 23 545 566 544 566 0.96 7 19 0.00064 0.072 14.1 0.5 1 21 571 591 571 595 0.92 8 19 0.0012 0.14 13.2 2.4 3 23 675 695 673 695 0.95 9 19 3.9e-05 0.0043 17.9 3.8 1 23 750 772 750 772 0.97 10 19 0.00027 0.03 15.3 0.7 1 20 777 796 777 798 0.94 11 19 0.0009 0.1 13.6 0.8 2 23 809 830 809 830 0.97 12 19 2.8e-05 0.0031 18.4 0.6 2 23 869 890 868 890 0.97 13 19 2.5e-05 0.0028 18.5 1.6 1 23 895 917 895 917 0.95 14 19 0.00014 0.016 16.2 2.8 1 23 923 945 923 945 0.98 15 19 4.4e-06 0.00049 20.9 0.4 1 23 961 983 961 983 0.95 16 19 3.6e-07 4e-05 24.3 0.6 1 23 989 1011 989 1011 0.99 17 19 3.9e-05 0.0044 17.9 0.2 1 23 1017 1039 1017 1039 0.97 18 19 0.00014 0.016 16.1 4.1 1 23 1045 1067 1045 1067 0.96 19 19 0.01 1.1 10.3 0.4 1 20 1073 1092 1073 1094 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGACGGTATAAATACGACGGAACCGCCGCAAACCGACGATGATATTGTCGATGCGGTGCCGGTCTGTCGGATCTGTCTCATGACCAATCTGGTGATGCGCGAACTTTTCCACGAAAACGATGTCACGTCGCTGTCAACCAAAGCTATGAGTTTCGCAAATGTTAAGatgtCACCAGACGACGGGCTTCCTTCGCACATCTGCTGTGTCTGCGCTGATAAGCTCGAAATAGCATATGACTTTAAATTGCAAGTCGAACAGGCCGACAGTGTTCTGAGAGAAAAGTTTGACTCGCTTAATATCAAAGGGGAATTGTTCTTCAACGACGTCGAGGTTCATTTGCACAATGTCAACCGAGCTGGCAACAATTCCGAGCTCATGGAGGATGCCAATTACGTGCACGCCGACGAGTCCATCGAAGAGATGGAGAGGAATTCGCAAACTGGATTGCTCAAAGACCATTTGGCTTTGTTacaagtacaaaaaatgaacgatcAGTCCGACCAAATGTTACATAATGAGCAACAAGTTGTTCAGCAAACATTACACAAAAGTTACGCCAAGGTTGAGGAGATGAAAGAAAGTGTCGGAGTTCCGCAGGAGTTTATGCCGATGGAAGATGAGGAAGATGCCGAAGGCACAACACATATGAAAGAAACGTCGCTGATAATGGACTCGGAAAGTCGTCAGGATAAGATTCACGAATCTCACGAGGCCGTTGCCGAGTATCAGGACGAGAAGGATTTTGAAGTAAGTCAGGAGTTCACTGAACAGGAGCAAGACGGCAGCGCCAGCGATAAATCCAAGCTGGAGCAGTCGGACCACGGGTCCGACGAGGAGAACTATTTCGAGAACTTGAACTTGAGTtcgagattgaaaaaaatcaagactGAAAATTCGGAGAGGCTGTTTTTCGTTTGTTATCTGTGCGATAAACAGTTCTTGTCCAAGGACGTTCTGAAGGAACACATGCATTCGCACGAGGAGATCAGACAGGCGCTGTCGCTGAAGAAGAGCGTGGAGAAGACGCCGAAGAGCAGCGTCCCGGTGAAGAGCCCGCCTTCGGGAAAAAGAGCAAACAAATGTCCGCATTGCGGCAAGGAGTATCTTTACATTATTTCGTTCAACAAGCATTTGAAACAGCACGAAAAGGAGAACAACGAGTCAAAGGATAATATGTCTTTGGACGCGTCGTTGAACGAGGACGATGATTCCCTTCGGTTTTCTGGGTTCGATAATAACGACAACTCGGAGAGCGACAACGAACACGAGCAGGAGAACGATGAGAATCATACTTGCGACAAATGTAACGAGAGTTTCTCAACAAAGAGGTTGCTGCAAAAACACAAAGTCAAACACATCGTCCTGAAATGCAACGTTTGCGAGGAAAATTTTGATACCCTGGACAAGCTTCGAGAGCATCGTTCTAAACACATAATCGAGGGCATCCTAACGGAGGACGACTTGAAGGAAGAGATGGAAGGTATTGAGATGATTGATAAGGAACAGGAAGAAGTGGAAGATGGAGACAGCGGAAAGAGCTTAAAATGTCCACACTGCACAATGACATTTGCTCGAAAGAAGGCATTTGAGAGGCACGTTGACAGTCACGAAAGCAAGTTGGTCTGTAAGATCTGTAGCCAGAAGTTCGGCAAGCACGATGCGCTGAAGAAACACATGGAGCAGCACGCTAAGAAAAGTTTCAAGTGCACTCAATGCAACAAGGTGTTTGGCAACGAGCTCACGCTGAGAAATCATCTGATTGCGACGAATCACAAAACAGTTATCTTGGGCCAGGAATATGATCCGAACAAGCGCATCAAGCGTGTCGCCGCGAAAGCCGCGCAGAAAATCATCGACCGAATCAAAACGGAGAATGACTCGGACGAGGACGAGCAGGATACGGAAAAGTCGGAGCAGGAAAATGAGAATGATAATGATGAACTTTATGCGCCACCCAAGGACGATCAGAATCGATTGGCCAAGAAAGTGGCTACGAAGAAATCACTTGACTGCACTACGTGCAATAAAAAGTGTATCTCTAAGCAGGCCCTGATGAAGCACATGGAACTTCATGTTAAGGACGAGAAAAACGAGAAGgctgataaaaatgataaacctAATGTTGCTCCTGAACGTGAGCCTATGAAAGTAGAGGTCAAAGTTCCAGTTGCAGATCACGACAACGGTGACGATTCAGACGATTTTGAGAGCGGGCTCGACTGGCCGATGGACACTCACGAATGTCCAACGTGCAAAAAGCGTTACAGCACAAAGAAATCTCTGCTTCGTCACCAATTGTTGCACGAAGAGCCAAATTTTGAGTGCGACATCTGTAATGTCAAGTTTTATCGTAAGGACAAACTGAAGGCTCATTATGACAAGTGCTCCGAGAGAAATCCCGACCAAGTGCGCAAATGCAACATCTGCGGtgacagttttgaaaataacaagatGTTGAAGGAGCATCGTGCCAAGCACGTATCAGAGGGCATTCTCACAGAGGAAGATCTTCGGGACATCGAACCTCGAGCCGAAGACAAGAAACCTGGCGAGAAAGTGGCGCGCAAGCGCAGAACGGACATCGTCGGACTCGAGTGCACCGAGTGCAACAAACAGTATACTTCCCGTAAGGGCCTGCTGCGACACATCCAGGTGCACGAGGGGAAGAAGTACCTCTGTGACATCTGTCCGAAGAAGTTTTACCGTCGCGAACATCTCAAGATCCACGTGGCGAAGCACAACATGGTGAAACCGTACAAGTGCACGCGCTGCACAAAGCGATTCATCAAAGAGGAGCAGCTCAACAATCATCTGTCCAAGCACGACCGGTCctttaaaaagaacaaagagACTGACAGTTCGAAGCGCTTCCTCTGTGAAATCTGCTCCAAGAGTTTCACTCAGTCCACCACGTTGATTGCCCATTTGCGGGCACACAACGGCATCAAGCCCTATGTGTGCGAGGTTTGTTCCAGGCCTTTCACCACGAACGCCTACTTGAAAATGCACATGCGCACGCACACTCAGGAGCGCCCTTACATCTGTCAGTACTGTTCGAGGGCTTTTGCCAGAGCGGACACCCTGGCCAACCATCTGACCTCGCACACGGGCGAAGCTAAATATCACTGCAAATATTGTCCGAAGAACTTCCGCAGACTGAAATCATTGAAGGAGCACGTGTTCATTCACACGGGACAGAGGCCCTACGCCTGTCCCACCTGCGATCGCAGATTCAATAATAACGGGAGCAGATACGCTCATAGCAAACGCTGCAAACAGAACCAATTGCAGAACCAAAATAGAGCCCAGGCCAGTCTTGCTCAGGTCCAGATCATCCAGCAGCAACCGGCTCAACAGACGCATGTGCAGACTCAGCCGCAGACTCACGTGCAGCAGCAGATTCAAATCCAGACCCAGCCGCAATTGACCCAGCAGCTACACCAAGCGAGGTTGCAGCCCACGCTTACACAGGCGCAGATCATCAAGTCACAAAACATCAAGACCATCACGATCGCCAGGCCTGCTGACCAGATCACCACACAGCAGGTCATGCAGCATCAGGAGATCCTGATGCCACTCATCTTACCGCTGACGGTCACCCTCGCTGATGTTGGCGAGGAAGTTATCCTGCCGGAAGGAACGAAAATTTTCACTACCACATAG
- Protein Sequence
- MDAVDGINTTEPPQTDDDIVDAVPVCRICLMTNLVMRELFHENDVTSLSTKAMSFANVKMSPDDGLPSHICCVCADKLEIAYDFKLQVEQADSVLREKFDSLNIKGELFFNDVEVHLHNVNRAGNNSELMEDANYVHADESIEEMERNSQTGLLKDHLALLQVQKMNDQSDQMLHNEQQVVQQTLHKSYAKVEEMKESVGVPQEFMPMEDEEDAEGTTHMKETSLIMDSESRQDKIHESHEAVAEYQDEKDFEVSQEFTEQEQDGSASDKSKLEQSDHGSDEENYFENLNLSSRLKKIKTENSERLFFVCYLCDKQFLSKDVLKEHMHSHEEIRQALSLKKSVEKTPKSSVPVKSPPSGKRANKCPHCGKEYLYIISFNKHLKQHEKENNESKDNMSLDASLNEDDDSLRFSGFDNNDNSESDNEHEQENDENHTCDKCNESFSTKRLLQKHKVKHIVLKCNVCEENFDTLDKLREHRSKHIIEGILTEDDLKEEMEGIEMIDKEQEEVEDGDSGKSLKCPHCTMTFARKKAFERHVDSHESKLVCKICSQKFGKHDALKKHMEQHAKKSFKCTQCNKVFGNELTLRNHLIATNHKTVILGQEYDPNKRIKRVAAKAAQKIIDRIKTENDSDEDEQDTEKSEQENENDNDELYAPPKDDQNRLAKKVATKKSLDCTTCNKKCISKQALMKHMELHVKDEKNEKADKNDKPNVAPEREPMKVEVKVPVADHDNGDDSDDFESGLDWPMDTHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSERNPDQVRKCNICGDSFENNKMLKEHRAKHVSEGILTEEDLRDIEPRAEDKKPGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLSKHDRSFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNQLQNQNRAQASLAQVQIIQQQPAQQTHVQTQPQTHVQQQIQIQTQPQLTQQLHQARLQPTLTQAQIIKSQNIKTITIARPADQITTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493762;
- 90% Identity
- iTF_01493762;
- 80% Identity
- -