Tjap010809.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- lov
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000754.1:13858-15979[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-05 0.015 15.6 0.0 2 38 192 228 191 233 0.86 2 4 8.6e-11 1.2e-07 31.9 0.0 5 39 245 278 242 282 0.92 3 4 0.0027 4 7.8 0.0 7 34 299 325 295 332 0.80 4 4 5.1e-11 7.4e-08 32.6 0.1 4 39 356 391 354 395 0.92
Sequence Information
- Coding Sequence
- ATGTGCGAAGAGTCGGGCGATGTGATGAACCGCGATTACAGTTTCAAATGGAGCGACTACCATGGTCAATTTTCGTACATTGTACGAGAACTTCTCACCGAGGGGTCCATGGTCGATGTCACCCTGGCCGTCGGTGGCGAACGAATTCAGGCTCACCGAATCGTTCTGTGTGCTTGTAGCACTTTGTTTCAGgaGTTGCTAAGTCAGGTGCACGAAGAAAACCCTGTCATCATTTTGGGGGACATGAatccaaaaattatcaaactgatTGTTGAATACTCTTATCACGGGGAGGTTCGAGTCCCAACTGAGAGTATTAATGCACTTTTGGAAACAGCTCaccttttaaaaattgtcggTCTGATGGATATTGAAGGGGTTGAAGATGACGATGCCCCGCCAAAGTCAGATGACTTGCAGAATGAGCTGAGCTTAACAGGTGACAGCCTGATAGACGAACACAACCATGATGAAGAGTTGAATGAAAACTCAATGGAAGAAGTTCTCAGTGACAATGAGGGTGCGAGTAAGAAAAAACGGAAGAGGCGAGAGAGTGCTAAACGCGAATACAGCGAGGACATGTTGGAATCAGCAATCGCTATGCTCAAATCTGGAAAAACACTTGTCGAGGCAGCAACTAGGAATAATATTCCCAGGTCGACTCTATACATGCGAGCAAAGTCACTCGGCTTGCAGATGCACGCTTCAAGAAGCGAGTATCCCGCAGAGTGTATGAAAGCAGCTATAGAAACAGTTTTGcGAGGATCTAGTTTGCAACAATCAGCAGACATGTATGGCATACCCAAAACAGTTTTGTGGCGTCGAATACAAAAAGAGGGTTTTCGAATTTTGAGAACCGATTGCGGCAGGACATACGACAGTGACAAAAGGCAAGCTGCAGTAGATGCTCTGGCAAGGGGTGAAAATTTGACTAAAGTGGCTGTCAAGTATCAAATACCCAAAACGACTTTGTTCAGAGACAAGATACGGCTTATTGGTGAAGGTAAGTTGCCAGTGAGTTTTCTGAAGAAACGTAATATCGAAGATGATGCGACCAGAAAATCACGCCTGGACAAGGCTGTGGCTGCATGCAAAACCGGAAAGATGTCACAAGCGGTCGCGTCTGCGACTTTTCAAGTGCcgaaaacaacaatttggAGACGACTGAAACAGAACAAGAAAAAGGACGGTGGAAATAAAGTGGAAACAAGGAAAAAGACTGTTAAAATAAGCGAAATCAAGGAGAGCGATGTTCTGAACTTTGAACTTTGTGAAGTGGCTTCGCACGAAATTCCCATAACGTACATTGACGAAAATGCTATACCTGGAGAATCTGTCATCATCCTGACAACCGATGAAGTGGAAAGTCTGAATTTAGATAATAGACAAATTATAGTTGAtcagGACAATGAACACGATTACATAAGTTGTCACATGGCCCTGGAAGATCACCCAAGTTTCAGTCAAAGCTCAAAAAGCTAG
- Protein Sequence
- MCEESGDVMNRDYSFKWSDYHGQFSYIVRELLTEGSMVDVTLAVGGERIQAHRIVLCACSTLFQELLSQVHEENPVIILGDMNPKIIKLIVEYSYHGEVRVPTESINALLETAHLLKIVGLMDIEGVEDDDAPPKSDDLQNELSLTGDSLIDEHNHDEELNENSMEEVLSDNEGASKKKRKRRESAKREYSEDMLESAIAMLKSGKTLVEAATRNNIPRSTLYMRAKSLGLQMHASRSEYPAECMKAAIETVLRGSSLQQSADMYGIPKTVLWRRIQKEGFRILRTDCGRTYDSDKRQAAVDALARGENLTKVAVKYQIPKTTLFRDKIRLIGEGKLPVSFLKKRNIEDDATRKSRLDKAVAACKTGKMSQAVASATFQVPKTTIWRRLKQNKKKDGGNKVETRKKTVKISEIKESDVLNFELCEVASHEIPITYIDENAIPGESVIILTTDEVESLNLDNRQIIVDQDNEHDYISCHMALEDHPSFSQSSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492790; iTF_01493693; iTF_01492990;
- 90% Identity
- iTF_01492790; iTF_01493693; iTF_01492990;
- 80% Identity
- iTF_01493693;