Tbro010078.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- ttk
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000477.1:62487-64566[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-05 0.014 15.6 0.0 2 38 192 228 191 233 0.86 2 4 9.5e-11 1.2e-07 31.9 0.0 5 39 245 278 242 282 0.92 3 4 0.0034 4.2 7.7 0.0 7 34 299 325 298 332 0.78 4 4 5.6e-11 6.9e-08 32.6 0.1 4 39 356 391 354 395 0.92
Sequence Information
- Coding Sequence
- ATGTGCGAAGAGTCGGGCGATGTGATGAACCGCGACTACAGTTTCAAATGGAGCGATTATCATGGCCAATTTTCGTACATTGTACGAGAACTTCTCAACGAGGGGTCTATGGTCGATGTCACCCTCGCCGTCGGTGGCGAACGAATTCAGGCTCACCGAATCGTTCTGTGTGCTTGCAGTACTTTGTTTCAGGAGTTACTAAGTCAAGTACAAGAAGAAAATCCTGTCATCATTTTGGGAGACATGAATCCAAAAATACTCAAACTGATTGTTGAATACTCTTATCACGGGGAGGTTCGAGTTCCAACCGAGAGCATTAATGCATTGTTGGAAACAGCTCATCTCTTAAAAATTGTCGGCCTGATGGATATTGAAGGGGTTGAAGATGACGATGCCCCGCCAAAGTCAGATGACTTGCAGAATGAGTTGAGCTTAACAAGAGATAGCCTGATGGATGAACACAATCATGATGAAGAGTTTAATGAAAACTCAATGGAGGAAGTTCTTAGTGATAATGATAGTACAGGTAAGAAAAAACGGAAGAGGCGAGAGAGTGCTAAACGTGAATATAGCGAGGACATGTTGGAATCAGCAATTGCTATGCTCAAATCTGGAAAAACACTTGTTGAGGCAGCGACTAGGAACAATATTCCCAGATCGACTTTGTACATGCGAGCAAAATCGCTCGGGTTGCAAATGCACGCTTCAAGAAGCGAGTATCCAGCAGAGTGCATGAAAGCTGCAATAGAAACAGTTTTgcgTGGATCTAGTTTGCAACAATCAGCAGACATGTATGGCATACCAAAAACAGTTTTGTGGCGACGAATACAAAAAGAGGGATTTCGAATTTTAAGAACTGATTGTGGCAGAACATACGACAGCAATAAGAGACAAGCTGCAGTTGATGCACTGGCAAGGGGTGAAAATTTAACCAAAGTGGCAGTCAAGTATCAAATACCCAAAACGACTTTGTTCAGAGACAAAATAAGACTTATTGGTGAAGGTAAGTTGCCTGTGAGTTTTTTGAAGAAACGCAATATCGAAGATGATGCGACCAGAAAGTCACGCCTGGATAAAGCTGTAGCTGCGTGCAAAACTGGAAAGATGTCGCAAGCGGTTGCATCTGCGACTTTTCAAGTaccaaaaacaacaatttggaGACGATTGaagcagaacaaaaaaaaggatggtGGAAATAAAGTAGAAACAAGGAAAAAGGCTGTTAAAATAAGCGAAATAAAGGAAAGCGATGTCTTGAACTTTGAACTTTGTGAAGTGGCTTCGCACGAAATTCCCATAACGTACATTGACGAAAATGCCATACCTGGCGAGTCTGTCATAATTTTGACAACTGATGAAGtagaaagtttaaatttagaCAATAGACAAATCATAGTTGAtcagGATAATGAACACGATTACATAAGTTGTCACATGACGCTGGAAGATCACCCAAGTTTcagtcaaaattcaaaaagctAG
- Protein Sequence
- MCEESGDVMNRDYSFKWSDYHGQFSYIVRELLNEGSMVDVTLAVGGERIQAHRIVLCACSTLFQELLSQVQEENPVIILGDMNPKILKLIVEYSYHGEVRVPTESINALLETAHLLKIVGLMDIEGVEDDDAPPKSDDLQNELSLTRDSLMDEHNHDEEFNENSMEEVLSDNDSTGKKKRKRRESAKREYSEDMLESAIAMLKSGKTLVEAATRNNIPRSTLYMRAKSLGLQMHASRSEYPAECMKAAIETVLRGSSLQQSADMYGIPKTVLWRRIQKEGFRILRTDCGRTYDSNKRQAAVDALARGENLTKVAVKYQIPKTTLFRDKIRLIGEGKLPVSFLKKRNIEDDATRKSRLDKAVAACKTGKMSQAVASATFQVPKTTIWRRLKQNKKKDGGNKVETRKKAVKISEIKESDVLNFELCEVASHEIPITYIDENAIPGESVIILTTDEVESLNLDNRQIIVDQDNEHDYISCHMTLEDHPSFSQNSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493493;
- 90% Identity
- iTF_01493493;
- 80% Identity
- iTF_01492990;