Tbro008569.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- nfxl1
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000361.1:157360-160597[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.034 3e+02 2.1 0.8 8 14 66 72 65 78 0.77 2 20 1.6 1.4e+04 -3.2 1.1 15 19 125 129 124 129 0.81 3 20 0.19 1.6e+03 -0.3 0.4 4 10 160 166 159 166 0.95 4 20 3.3e-08 0.00028 21.3 18.3 1 19 174 191 174 191 0.99 5 20 1.3e-07 0.0011 19.4 15.0 1 18 227 243 227 244 0.98 6 20 1.3 1.1e+04 -3.0 0.9 5 10 268 273 268 273 0.91 7 20 0.0022 19 5.9 11.4 1 19 279 298 279 298 0.86 8 20 1.7 1.4e+04 -3.3 12.0 3 18 336 351 323 352 0.89 9 20 0.005 43 4.8 8.0 1 12 386 397 386 397 0.94 10 20 2.8 2.4e+04 -4.0 1.6 6 10 407 411 407 411 0.95 11 20 1.3e-07 0.0011 19.4 14.6 1 19 417 435 417 435 0.93 12 20 2 1.7e+04 -3.6 0.7 6 10 464 468 463 468 0.88 13 20 0.00021 1.8 9.2 8.0 9 19 483 493 481 493 0.90 14 20 0.0019 17 6.1 6.6 1 12 502 512 502 512 0.95 15 20 1.3 1.1e+04 -2.9 5.8 14 18 543 547 543 548 0.89 16 20 0.45 3.8e+03 -1.5 1.7 2 11 557 567 557 568 0.71 17 20 0.00039 3.3 8.3 10.1 1 12 584 595 584 607 0.90 18 20 0.0001 0.86 10.2 13.0 3 19 616 632 607 632 0.88 19 20 2.5e-05 0.22 12.1 11.0 1 16 677 691 677 696 0.95 20 20 0.84 7.2e+03 -2.3 0.6 5 10 726 731 726 731 0.89
Sequence Information
- Coding Sequence
- atgaagaGGTTCAAAAAAGCTCAGGCTCAGGACAGGGCTGCCATAAAGAAACACTTGGAAGCCAATAGCATTGTGTACTCCAGTAGCGACGACGAGGATCTCAATGAAGAAACTTTGCAGCAAACGGTAGACAAAGTATTTATCAACTACCAAAACGATGGGGCTGACacggaaaaaattttatcttactTGACGGACGTTTGTCACTCTGGCGCTTCGATATGTCTCGTTTGCATTTCTTCAGTAAAAAAGGGCGATGCTatTTGGAGTTGCTCCACTTGTTATTCGTTTTTACATCTGCCATGTATTCAACACTGGATCAGGGACagtttgatttacaaaaaagaaaaaggcaTAAAGCCTGTCTGGGCTTGCCCAAAATGTCGAATGGAGTACGAAGAATCAGAAATTCCAAGTCGCTACTACTGTTTTTGTGGGAAGACCGAAGATCCACCGTATCAGCCATGGAATTTGCCGCACTCTTGTGGCGAGATTTGTGGAAAGTTGCTACAGCCCGAGTGCGGTCACAAGTGTACACTTCTTTGTCATCCAGGACCGTGTCCTCCGTGTCCAAAAATAGTTCTCACAGCCTGTTACTGCGAGAAAAAATCAGAAGAGCCTCGCAGGTGCAGTTCCAAAGAATGGAGTTGCGGAAGCGCCTGTGGTGCTGTGCTTTACTGCGGTCATGCCTGTCAAGCTGCTTGTCACCCTGGATCTTGTCCTCCTTGTGTCGAGACCTCGAACGTTTCTTGCAACTGCGGGGCCAAGAAGGAAGCGAAACTTTGCAGCGAGCGCAATTGGAGATGCGAAAGAGCTTGCAACAGAAAACTCAACTGCAATGTGCACACTTGCGAAGGATTTTGTCATCGTCAGGCCGACTGTGGACCTTGcccttttgaaaaaaaccgTACCTGCCCTTGCGGCAAGAAGAAGTACGCGATCTCATGCAAACAACAGACGACCCCCACTTGCGGCGACACTTGCGGTAAACTGTTGGACTGCAAGGCTCACTTTTGTAACATGAGATGTCACGCGGACAAGTGCGGTCAATGCATACagGTCGTAATGAAAGTTTGCCGTTGCGAAAGCTTCAGCAAAGAAGTGGCATGCGGGAAGGAGTTTCACTGTAACAAAAAGTGTACCCAGGTGAGGCTCTGCGGACGTCACccctgcaataaaaaatgttgcgactgcctgattaaaaataacttcaacATTTGCGAGAAGACCTGCGACAACATGCTCAACTGTCGCAAGCACAAGTGTTCAGCCCCGTGCCATAGTGGGCCCTGTTATCCCTGTCCCAGAACTGTTGTCATTCAGTGTCGTTGCGGAGGAAGCAAAATTACTGTTCCCTGCGGCACAGTAAAGAAAATCAAACCACCGCCGTGTAATAAGCTGTGTAAAATACCTCCGATTTGTCACCATCCGAAAAGGGAATCTCACAAGTGTCATCAGGGAGCTTGTCCACCttgcaaaaaagtttgtgCTATCAAACTTAGATGTGGTCATTCTTGTCCTGTTGTTTGTCACACAAAAGTTTGGatgaagGTGAGAATTAACGGAGTTACTCAACCAATTGGTCCTTGGGATACACCCCAAGAAaaatgggaacaaaaaacaCTGCCCTGTCCTCCGTGCGAGGTTTCAGTCATGGTGTCCTGCTTAGGAGAACACGAGTGCAAGCCCTGGCCCTGCCACCAAGCAAAACCAACGTCCTGCCTACGAGAGTGCGGTCAACTTCTTACATGTTCCAATCACAATTGCGAGAAGCTGTGCCACAAAATCGACGAGGGCTGCATGGAATGTGAGAAACCTTGCGGCCTCGTTCGTCCCGCTGGTTGCACACACAGCTGTGACAAAATTTGTCACCCTGCTCCCTGTGCTCCTTGCAGACAGATGGTCAAAGTGCAGTGCCACTGTGCTATCAATGTACTTTACATCCGGTGTTCTGTGCTCACTTCTGCCAGCGCTGAAGACAAACTCGAGCTTTATAAATGTGGAAATCAATGCCCAAAAAATtacaAATGCGGTCACAGATGTATCGAAAATTGTCATCCAGGAATTTGCCAGAAGGAAGAgctttgtaacaaaaaagtcaaaatctggtgcaaatgtaaaagaataaagaaagaattttCCTGCAAGGCTATTCGTGCCGGGCAGGCTATGGTGAACTGCGATGAAGTATGCAAGCAAAAAATATCcgagattgaaaaaatcaaagcgGAAGCTTCCGcaagaaagaagaaagaagaggAGCTGAAAAATCAGAAAGAGATAGAACAGTTTGAAAGGAAGTTCAAGCCGAAGAAGAAAGGTCGAGACCGGCACAGGTTGGAACAAAATTCAGACGACGCCAACTCGAACCTGTACCGCGTGCTAATGACTTCTTTTGTGATCATCCTAGCTTCGGTGATAAGCCTCTTCTACTATACCAACTACGTACTGGCTTAA
- Protein Sequence
- MKRFKKAQAQDRAAIKKHLEANSIVYSSSDDEDLNEETLQQTVDKVFINYQNDGADTEKILSYLTDVCHSGASICLVCISSVKKGDAIWSCSTCYSFLHLPCIQHWIRDSLIYKKEKGIKPVWACPKCRMEYEESEIPSRYYCFCGKTEDPPYQPWNLPHSCGEICGKLLQPECGHKCTLLCHPGPCPPCPKIVLTACYCEKKSEEPRRCSSKEWSCGSACGAVLYCGHACQAACHPGSCPPCVETSNVSCNCGAKKEAKLCSERNWRCERACNRKLNCNVHTCEGFCHRQADCGPCPFEKNRTCPCGKKKYAISCKQQTTPTCGDTCGKLLDCKAHFCNMRCHADKCGQCIQVVMKVCRCESFSKEVACGKEFHCNKKCTQVRLCGRHPCNKKCCDCLIKNNFNICEKTCDNMLNCRKHKCSAPCHSGPCYPCPRTVVIQCRCGGSKITVPCGTVKKIKPPPCNKLCKIPPICHHPKRESHKCHQGACPPCKKVCAIKLRCGHSCPVVCHTKVWMKVRINGVTQPIGPWDTPQEKWEQKTLPCPPCEVSVMVSCLGEHECKPWPCHQAKPTSCLRECGQLLTCSNHNCEKLCHKIDEGCMECEKPCGLVRPAGCTHSCDKICHPAPCAPCRQMVKVQCHCAINVLYIRCSVLTSASAEDKLELYKCGNQCPKNYKCGHRCIENCHPGICQKEELCNKKVKIWCKCKRIKKEFSCKAIRAGQAMVNCDEVCKQKISEIEKIKAEASARKKKEEELKNQKEIEQFERKFKPKKKGRDRHRLEQNSDDANSNLYRVLMTSFVIILASVISLFYYTNYVLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493996;
- 90% Identity
- iTF_01493996;
- 80% Identity
- -