Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000275.1:20034-22111[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.01 1.1 10.3 0.6 2 23 166 187 165 187 0.97

2 15 0.00023 0.026 15.5 2.2 2 23 193 214 192 214 0.97

3 15 3.9e-07 4.4e-05 24.2 0.7 1 23 220 242 220 242 0.98

4 15 0.0034 0.38 11.8 0.2 2 23 268 290 267 290 0.95

5 15 3.3e-05 0.0036 18.2 0.2 1 20 296 315 296 318 0.94

6 15 2.8e-05 0.0031 18.4 2.0 1 23 324 346 324 346 0.97

7 15 2.3e-06 0.00026 21.8 1.7 1 23 352 374 352 374 0.96

8 15 3.4e-05 0.0037 18.1 0.6 1 23 380 402 380 402 0.98

9 15 2.1e-05 0.0023 18.8 7.2 1 23 408 430 408 430 0.97

10 15 8.7e-08 9.7e-06 26.3 1.0 1 23 435 457 435 457 0.97

11 15 6.4e-05 0.0072 17.2 1.1 1 23 463 485 463 485 0.97

12 15 0.00099 0.11 13.5 6.7 1 23 491 513 491 513 0.96

13 15 2.5e-07 2.8e-05 24.8 0.6 1 23 519 541 519 541 0.98

14 15 1.6e-06 0.00018 22.3 0.8 2 23 548 569 547 569 0.97

15 15 0.00045 0.05 14.6 0.7 2 23 577 599 576 599 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.01	1.1	10.3	0.6	2	23	166	187	165	187	0.97
2	15	0.00023	0.026	15.5	2.2	2	23	193	214	192	214	0.97
3	15	3.9e-07	4.4e-05	24.2	0.7	1	23	220	242	220	242	0.98
4	15	0.0034	0.38	11.8	0.2	2	23	268	290	267	290	0.95
5	15	3.3e-05	0.0036	18.2	0.2	1	20	296	315	296	318	0.94
6	15	2.8e-05	0.0031	18.4	2.0	1	23	324	346	324	346	0.97
7	15	2.3e-06	0.00026	21.8	1.7	1	23	352	374	352	374	0.96
8	15	3.4e-05	0.0037	18.1	0.6	1	23	380	402	380	402	0.98
9	15	2.1e-05	0.0023	18.8	7.2	1	23	408	430	408	430	0.97
10	15	8.7e-08	9.7e-06	26.3	1.0	1	23	435	457	435	457	0.97
11	15	6.4e-05	0.0072	17.2	1.1	1	23	463	485	463	485	0.97
12	15	0.00099	0.11	13.5	6.7	1	23	491	513	491	513	0.96
13	15	2.5e-07	2.8e-05	24.8	0.6	1	23	519	541	519	541	0.98
14	15	1.6e-06	0.00018	22.3	0.8	2	23	548	569	547	569	0.97
15	15	0.00045	0.05	14.6	0.7	2	23	577	599	576	599	0.97

Sequence Information

Coding Sequence: ATGAATTATGCATACAAACGTTTCCTGCTTTTGATTCTTAGCAAAAACTTGATACATATGGATGAATCGGAGGATAAGGATGAGGGCATGGATGCGTTAGGAATTGATAGCCAAGTGATGGATGAAAACATCGTGAGTGTTGTACTAAAAGAGGAACCTGGAGAAAGGTTCGATCCTGGTTACATGGAAGATATCTGTTCAGGCACTTCATTCTTATCTGGAAAAGTATTTCTACCGATTGACAATCAAGAAGTGGATTTCCCCGATGAGATGGTAAAATTACAACTGGAAGGTGAATCATCAGGCGTACATACAAACTGGGCAGCTCACATAACAAACAATGCATCGCTTTGTGAAAAGGTTGAGAGCGCCGTGCAACGGTGTCTTGTGGTGAGCGATTTTGCCTGCGTGGCTGAGGAGACTGAGAAGGATCTGAACGAGACTGACGAGGACGAGAACGACAATACGGACGAGCAACAAAAGTTCTACAAGATCCAGTGCACGATATgtaaaaaatggtttcttAATAACGACTCCATGATCACGCATCTGCGCACCCATTGCGAGGGTGGCACACAGTGCGAGATCTGCGAGCAGAACTTTGTCGACAACTGTAGCTTGCACGCCCACATGCTCAGTCACGTGGGAATGAGCCCGTTCGAGTGCAACGTATGTCAGAAAGCATTTGCCTACAAATGGAGTTTGCGGAGTCACATGCAAACTCACAGCTCGACCGACAAGAGTTCGTCGCCTGTCATCGATAATGACGAGCTCATCAGTAGTACAAATGAACAGAGGCTCCAATGTGACCAGTGCGAGGTGGTTGTTAAGGACAAGCTCACTCTGAACCGTCACATACAGCTGAGCCACAATCAAGCACTGGAATACCGATGCGAGGTGTGCTCGATAAGCTTCAAGGATAAGGCGAAATTGAACGTCCACATGCCTGTTCACGGAGGGAGCAAACAGTTCAAATGCACCATGTGTCATCGgCTGTTTGCCCAGAAAACAGCTCTGAACAATCACATGTTGGCTCACAGCGGAGAAAAACCACACGCCTGTAGCGTTTGCGAGAAGACGTACAAGCGGAAATCTGAGCTGATCAGACACACGATGGTGCACACGGGAGAGCGGCCCTACGAGTGCAAGGAGTGCCTGATGACGTTCCGTGAGAAGGCCAAACTTAATTCTCACATGCTGGTGCACACCGGTGAGAAGCCGCATGAGTGTCATATCTGTCACAAGGCGTGCGCCCGCAAGTCCGACCTCAACAGTCACATGCTCTCTCACACGGGTGGCCAGTACGACTGCAAAgtttgtgacaaaattttcaccCGAAAGTCCGACCTCAATAGGCACACGCTCATCCACACGGGTGAGAAACCGTTTGCTTGCGAGCACTGCGACATGGCCTTCCGAGAGAAGACCCGACTCAATTCGCACATGCTCATCCACACGGGCGACAACAGACACGCCTGTCACATCTGCCACAAGAGCTTTCGCGAAAAGTCCATCTACAAAAAGCACATGCTCGTGCACACCGGCGACAGGCCGTACGAATGTTACGTTTGCAACAAGGCGTTTACCCAGAAGAGCACGCTCAACAGTCACATCCTGGTGCACGTGAAAGAAGCCTCAGTTGAGTGTCccgtttgtaataaaatattcaatcacaAGGCGGTGCTCAAGAAACACATGCTCACCCACTGCAATGACAACGATACCAATCAGTGCCCTAtctgtttgaaaaagttgtcgCACAAGACCGCGTTGGCCAACCACATCGCTACCACACACTCATCTTAA
Protein Sequence: MNYAYKRFLLLILSKNLIHMDESEDKDEGMDALGIDSQVMDENIVSVVLKEEPGERFDPGYMEDICSGTSFLSGKVFLPIDNQEVDFPDEMVKLQLEGESSGVHTNWAAHITNNASLCEKVESAVQRCLVVSDFACVAEETEKDLNETDEDENDNTDEQQKFYKIQCTICKKWFLNNDSMITHLRTHCEGGTQCEICEQNFVDNCSLHAHMLSHVGMSPFECNVCQKAFAYKWSLRSHMQTHSSTDKSSSPVIDNDELISSTNEQRLQCDQCEVVVKDKLTLNRHIQLSHNQALEYRCEVCSISFKDKAKLNVHMPVHGGSKQFKCTMCHRLFAQKTALNNHMLAHSGEKPHACSVCEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFREKTRLNSHMLIHTGDNRHACHICHKSFREKSIYKKHMLVHTGDRPYECYVCNKAFTQKSTLNSHILVHVKEASVECPVCNKIFNHKAVLKKHMLTHCNDNDTNQCPICLKKLSHKTALANHIATTHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493761;
90% Identity: iTF_01493761;
80% Identity: -