Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01058873.1:4863-7373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.11 11 7.3 0.2 1 23 267 290 267 290 0.87

2 11 1.1e-05 0.0012 19.8 1.7 1 23 293 315 293 315 0.98

3 11 6.5e-06 0.00066 20.6 2.2 1 23 321 344 321 344 0.97

4 11 0.036 3.7 8.8 2.4 1 23 353 375 353 375 0.95

5 11 1.2e-05 0.0012 19.7 1.6 1 23 381 403 381 403 0.97

6 11 0.00047 0.048 14.7 8.1 1 23 409 432 409 432 0.98

7 11 7.6e-08 7.8e-06 26.7 0.9 1 23 438 460 438 460 0.99

8 11 0.002 0.21 12.7 0.1 2 23 467 488 466 488 0.97

9 11 2.2e-06 0.00022 22.1 0.1 1 23 494 516 494 516 0.97

10 11 9.8e-06 0.001 20.0 1.9 1 23 522 544 522 544 0.98

11 11 0.002 0.21 12.7 3.5 1 23 551 574 551 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.11	11	7.3	0.2	1	23	267	290	267	290	0.87
2	11	1.1e-05	0.0012	19.8	1.7	1	23	293	315	293	315	0.98
3	11	6.5e-06	0.00066	20.6	2.2	1	23	321	344	321	344	0.97
4	11	0.036	3.7	8.8	2.4	1	23	353	375	353	375	0.95
5	11	1.2e-05	0.0012	19.7	1.6	1	23	381	403	381	403	0.97
6	11	0.00047	0.048	14.7	8.1	1	23	409	432	409	432	0.98
7	11	7.6e-08	7.8e-06	26.7	0.9	1	23	438	460	438	460	0.99
8	11	0.002	0.21	12.7	0.1	2	23	467	488	466	488	0.97
9	11	2.2e-06	0.00022	22.1	0.1	1	23	494	516	494	516	0.97
10	11	9.8e-06	0.001	20.0	1.9	1	23	522	544	522	544	0.98
11	11	0.002	0.21	12.7	3.5	1	23	551	574	551	574	0.98

Sequence Information

Coding Sequence: atgaatatttctgCTTCTTTCGCAACACTATGTCGTCTATGCTTAGAACCAGAGCAAGCTAGTATTccaatatttaaagaaaatgaaaccgGCGTCTGCgaattatttgacaaaatatcagtttGCCTTCCTGTAAAACTTTCAGAAGATGATTGCTTACCGAAGAGCATTTGTAGCACTTGCTGTAAAAgtgttgattttatttacaacTTCTGGCAAATATCGTCAAATTCGGAGAAGCAACTGAAAAGCATGGTACAATCTGTCGATCAAGctaaaaacgattttgaaGGATGTGCTGTCGATGCTAGTCCTGAAAACACACTGATTTTGTACGAAACATTGGAAGATAGAGATGTTATTGAAGAAAGAGATGACGAAGAGGTGCCAGATGCGAGTAATATCGAAATTAAAGAAgtatattttggagaatatTTAAATCAGTGTGATACCATTGAGGATGAAAACACTGTGTTGATCAACGAAGATTCGCCTCAAATGAAGTCAGAAGCGTTAGCGAATGAAATTCTCTTATCGAACGTCAGTGACGATACAGCAGCTCAGTCCAGTAATGTTGAGGATATTCAAATTAGTCAAATTGTTGAAAGTAGCAATGTTTCATTGAGGACTTTTGACGAAGAAAATTCACTTAAGCTGAAGTTGTGGGATGTCGCAttacctgatttttttctaataccaTACGGTTACGAAGCTGAAACACATTCAGTAGATCCGAATGCGGTCGTTCTAAtggatttacaaaaatcgaccATCGTTGTACCTGAAAAAAGTCACGCATTTGCCTGCGATATTTGCGAAACCACATTTAATGAACAGTTACCGTATTTGAAACACTACGAAGAAGTGCATAAACAGTATAAGTGTCCATTTTGCGAGAAATCATTTATTCGCCGGTATAGGCTGGAGAATCATTTGTTTGTACATAGCTCTCGGCGTGATTTTCCCTGTACATTATgttcgatgaaatttaaacGTCAATATGATCTTAAACAGCACATTAAGCGGATGCACAACAAATTAGTTGAAacgcgaatttttgaatgtgaTAATTGCACGTACAAAACGAagcataaaaatcaaatgagaATTCACGCTCTCGGTCATTTAGGTATCTCTTTATTCAGTTGCGATTTGTGtggtaaaactttcaaaacaaatttggaTTTTACCGTGCATCGTAACAATCATTTAGGCATAAAGCCGTTCCAATGTGATATTTGTGGCAATCATTTTACACGAAAGCATCACATGCTACAACATCGTAAAACGATGCATGAAGAATTATATTCTTATCAGTGCGACATATGTGGACGTAGTTTTTCGTACAGATCCAGTTTGAGTATCCATTTGAAATCGCATACAGGCGAAAATAGAGTGCAATGCGATATCTGCAATAAAATAGTCAGTAGTAAAGTGGTCTTGgctaatcataaaaaaattcattcagatGAGAAAGAATTCGTCTGCGGAATTTGCGGCAAAgtttacataaataaatactcTTTACAAGAACACGTTCTTGTTCATACTGGAAGTAAACCGTTTCAGTGTTTGCAATGTGATAAATCATTTTctactcgtaaaaaattattaaatcacgAGCAAATTCATGAACCTATCCGTTCATTgtattattgcaatttttgcgaaaaatcgtatttatcaaaatataagCTGAACGAACATATGCAAAAACGACATTAA
Protein Sequence: MNISASFATLCRLCLEPEQASIPIFKENETGVCELFDKISVCLPVKLSEDDCLPKSICSTCCKSVDFIYNFWQISSNSEKQLKSMVQSVDQAKNDFEGCAVDASPENTLILYETLEDRDVIEERDDEEVPDASNIEIKEVYFGEYLNQCDTIEDENTVLINEDSPQMKSEALANEILLSNVSDDTAAQSSNVEDIQISQIVESSNVSLRTFDEENSLKLKLWDVALPDFFLIPYGYEAETHSVDPNAVVLMDLQKSTIVVPEKSHAFACDICETTFNEQLPYLKHYEEVHKQYKCPFCEKSFIRRYRLENHLFVHSSRRDFPCTLCSMKFKRQYDLKQHIKRMHNKLVETRIFECDNCTYKTKHKNQMRIHALGHLGISLFSCDLCGKTFKTNLDFTVHRNNHLGIKPFQCDICGNHFTRKHHMLQHRKTMHEELYSYQCDICGRSFSYRSSLSIHLKSHTGENRVQCDICNKIVSSKVVLANHKKIHSDEKEFVCGICGKVYINKYSLQEHVLVHTGSKPFQCLQCDKSFSTRKKLLNHEQIHEPIRSLYYCNFCEKSYLSKYKLNEHMQKRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262790;
90% Identity: iTF_01150653; iTF_01472635;
80% Identity: -