Pmar020530.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01046915.1:350-2820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.049 3.9 8.3 0.2 1 23 268 291 268 291 0.88 2 11 2.1e-05 0.0016 19.0 2.2 1 23 294 316 294 316 0.98 3 11 1.3e-05 0.001 19.6 1.9 1 23 322 345 322 345 0.97 4 11 0.027 2.2 9.2 2.8 1 23 354 376 354 376 0.95 5 11 1.2e-05 0.00095 19.7 1.6 1 23 382 404 382 404 0.97 6 11 0.00011 0.0084 16.7 6.6 1 23 410 433 410 433 0.98 7 11 1.2e-07 9.7e-06 26.0 2.9 1 23 439 461 439 461 0.99 8 11 0.00037 0.029 15.0 0.1 2 23 468 489 467 489 0.97 9 11 2.1e-06 0.00017 22.1 0.1 1 23 495 517 495 517 0.97 10 11 9.7e-06 0.00077 20.0 1.9 1 23 523 545 523 545 0.98 11 11 0.0032 0.25 12.1 3.2 1 23 552 575 552 575 0.97
Sequence Information
- Coding Sequence
- atgagtaTTACTGCGTCTTTCACAACACTTTGTCGTCTATGCTTGGAACCAGAACAAGCTAGTATCCCGAtatttaaagaaaatgaaaccgGTGTTTGTGAattatttgacaaaatatcAGTTTGCCTTCCTGTCAAActttcagaAGATGACTGTTTACCAAAGAACATTTGTAGCTCTTGCTGTAAAAGTGTTGATTTTATATACAACTTTTGGCAAATATCGTCAAATTCGGagaaacagttgaaaaatatgatacAAACCGTCGATGTAAAACATGATTACGATGTACAAGAATGCGCTGTGAACGCTGGTTCGGAAAATACTTTGATTCTGTACGAAACATTGGAAGACAGAGATGTTATCGAAGAAAGAGGCGACGAAGAAGTACCGGATGCTAGCAATATCGAAATTAAAGAAGTATACTTTGGCGAGTACCTAAATCAGTGTGATACaattgaagatgaaaatacCGTTTTAATAAATGAAGATTCGCCTCAAATTAAATCGGACACGTTAGCCAGTGAAATTCTCTTATCCAACGTCAGTGACAACGCAGCAGCCCAGTCCAGTAATGTTGAAGACATTCAAATTAGTCAAATTGTTGAAAGTAGCAACGTTTCCTTGAGGACCTTTGACGAAGAAAATTCACTTAAGCTGAAGTTGTGGGATGTCGCGttacctgatttttttctaataccaTACGGTTACGAAGGTGAAACTCATTCAGTAGAGCCGAATGCGGTCGTTCTAATGGATTTACAAAAACCGACTATTGTTGTACCTGAAAAAAGTCACGCATTTGTCTGTGATATTTGCGAAACCACATTTAATGAACAGTTACCATATCTGAAACACTACGAAGAAGTGCATAAACAGTATAAGTGTCCGTTTTGTGTGAAATCGTTTACTCGTCGGTATAGGCTGGAAAATCATCTCTTCGTGCATAGCTCTCGGCGTGATTTTCCGTGCACGATGTGTTCGATGAAGTTTAAACGTGAATACGATCTTAAGCAGCACATTAAACGAATGCATAACAAATTAGTTGAAacggaaattttccaatgtgATAACTGCAGTTATAAAACGAAgcacaaaaatcaaatgagAATTCACGCTCTCGGCCATTTAGGCATATCCTTATTCAGTTGCGATTTATGTggtaaaactttcaaaacgaATTTGGATTTTACCGTCCATCGTAACAATCATCTGGGCATAAAACCGTTCCAATGTGATATTTGCGGTAATCGTTTCACTCGGAAGCATCATATGTTGCAACATCGTAAAACGACGCACGAAGAATTGTTTTCTTACCAGTGCCACATATGTGGAAGGAGTTTTTCGTACAGATCCAGTTTGAGTATCCATTTGAAATCGCATACGGGCGAGAATAAAGTGCAATGCGATATATGTAATAAAGTAGTCAGCAGTAAAGTAGTCTTGGCTAATCATAGGAAAATTCATTCCGATGAGAAAGAATTTGTTTGCGGAATTTGTGGCAAAGTTTACATCAATAAATACTCTTTACAAGAACACGTCCTCGTTCACACTGGAAGTAAACCTTTCCAGTGTCTGCAGTGTGATAAGTCATTTTctactcgtaaaaaattattaaatcacGAACAAATTCACGATCCCGTTCGTTCGTTGTATTACTGCAATTTTTGCGATAAATcgtatttgtcaaaatttaaactGAATGAACATATACAGAAACGTCATTAA
- Protein Sequence
- MSITASFTTLCRLCLEPEQASIPIFKENETGVCELFDKISVCLPVKLSEDDCLPKNICSSCCKSVDFIYNFWQISSNSEKQLKNMIQTVDVKHDYDVQECAVNAGSENTLILYETLEDRDVIEERGDEEVPDASNIEIKEVYFGEYLNQCDTIEDENTVLINEDSPQIKSDTLASEILLSNVSDNAAAQSSNVEDIQISQIVESSNVSLRTFDEENSLKLKLWDVALPDFFLIPYGYEGETHSVEPNAVVLMDLQKPTIVVPEKSHAFVCDICETTFNEQLPYLKHYEEVHKQYKCPFCVKSFTRRYRLENHLFVHSSRRDFPCTMCSMKFKREYDLKQHIKRMHNKLVETEIFQCDNCSYKTKHKNQMRIHALGHLGISLFSCDLCGKTFKTNLDFTVHRNNHLGIKPFQCDICGNRFTRKHHMLQHRKTTHEELFSYQCHICGRSFSYRSSLSIHLKSHTGENKVQCDICNKVVSSKVVLANHRKIHSDEKEFVCGICGKVYINKYSLQEHVLVHTGSKPFQCLQCDKSFSTRKKLLNHEQIHDPVRSLYYCNFCDKSYLSKFKLNEHIQKRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262790;
- 90% Identity
- iTF_01491292;
- 80% Identity
- -