Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01020705.1:1-2671[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00038 0.039 15.0 3.4 1 23 187 209 187 209 0.97

2 14 7.6e-05 0.0078 17.2 1.6 1 23 214 236 214 236 0.98

3 14 3.9e-05 0.004 18.1 1.5 2 21 244 263 243 264 0.93

4 14 0.022 2.2 9.5 0.2 1 23 269 292 269 292 0.97

5 14 0.032 3.2 9.0 0.1 2 23 315 335 314 335 0.95

6 14 4.4e-05 0.0045 18.0 0.0 1 21 341 361 341 362 0.95

7 14 5.5e-07 5.6e-05 23.9 0.5 1 23 369 391 369 391 0.98

8 14 0.00034 0.035 15.2 0.3 1 23 401 424 401 424 0.97

9 14 2.4e-05 0.0025 18.8 1.6 1 23 432 455 432 455 0.97

10 14 0.0011 0.12 13.5 0.7 1 23 462 485 462 485 0.92

11 14 0.00017 0.017 16.1 0.2 1 20 543 562 543 563 0.96

12 14 0.0067 0.69 11.1 0.1 1 23 571 594 571 594 0.90

13 14 0.016 1.6 9.9 4.1 1 23 599 621 599 621 0.94

14 14 0.32 33 5.8 0.8 5 22 630 647 628 647 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00038	0.039	15.0	3.4	1	23	187	209	187	209	0.97
2	14	7.6e-05	0.0078	17.2	1.6	1	23	214	236	214	236	0.98
3	14	3.9e-05	0.004	18.1	1.5	2	21	244	263	243	264	0.93
4	14	0.022	2.2	9.5	0.2	1	23	269	292	269	292	0.97
5	14	0.032	3.2	9.0	0.1	2	23	315	335	314	335	0.95
6	14	4.4e-05	0.0045	18.0	0.0	1	21	341	361	341	362	0.95
7	14	5.5e-07	5.6e-05	23.9	0.5	1	23	369	391	369	391	0.98
8	14	0.00034	0.035	15.2	0.3	1	23	401	424	401	424	0.97
9	14	2.4e-05	0.0025	18.8	1.6	1	23	432	455	432	455	0.97
10	14	0.0011	0.12	13.5	0.7	1	23	462	485	462	485	0.92
11	14	0.00017	0.017	16.1	0.2	1	20	543	562	543	563	0.96
12	14	0.0067	0.69	11.1	0.1	1	23	571	594	571	594	0.90
13	14	0.016	1.6	9.9	4.1	1	23	599	621	599	621	0.94
14	14	0.32	33	5.8	0.8	5	22	630	647	628	647	0.93

Sequence Information

Coding Sequence: TATCAAGTGACCGAAGTTGTACTCGACCGACCACAACAAAACATCCCCGACGAGAGGAGAAATCGCATTGTAGAATCAGTGGCACAATCGCATCAAGACCGCAACTCGCCACATAACTCCGGCCCAGAGCCTTCGTACAGAATAGACCCGCATAGTGGCCTTCCGCAAGAGATGATGTTCATAAGTTATAACGAGTCAGCGCCCCACACAACGGCGGACGATGATACGCTCGAATCTTGCGACGTCGAAAAACTGgtcgataattttatcaaagagGAAGAGTTGCAGATTGACGATGAAAACAGCGGTGagtcaaaagaaaataataaaatattgccCGAAGAGTACGAGAAATTCGTCGTGCAGTATAATAAAACGAGCATAAAATACATGCAATGCGACAAATGCCAGTTCATATGTCGACCTTTAAcgcatattttcgaaaaacactACAAGACCCATTTCGATGACGCGGACATCGACGAGAAACCCGACATCAATATGTTGCAGCAAATGAACGAGACGCCGTCCGAACCGGTCGAAGAGCCCGAGAAGATATTCTGTTGCGATATTTGTAACGCGCAGTTTAGCACGGAGCGGTCTCTGCACGCGCATCAGAAAATCCACCGAGCCAGGGTGTTCTCGTGCTCTCTGTGCGGCCTTATTTACAAAACGAGGTTCGAATTGAAGGTTCATAAGAAAACGCACGCCTCGCAAGTCGTCTCgttggtctgcaacatgtgcggaaagaatttcaaaacaaagtcCGGCTATAACCACCATCGTAACAATGTCTGCGTCGAATACAAATGCGAAATATGCGGCGATATGTTTCTGGTCAAGTCGGTGCTGCAAGATCATCTGAAAAAGGTGCACGATATCGAAGAAGATATCTCGGTAGCCGAGCCCGAGCCATCGCTGAAGAAAGAGCAAGCCAGCAGTGTGTGCCCGATCTGTGGTAAATTGGTCACCGAAAATGCCCTATCGAGACATTTGAACTTGCATTCCGAAGATAAGCCTTACATATGCGACCTGTGCGGTAAATCGTTCCGTATCAAGTGGTCCCTCAGAGAGCACATCATGATCGAAATAGGCATGAAGGATTACGTATGCGAAATATGCGGCAAGAAATTCGTCATCCAGGCCTACCTCAATAAACACATGCGATTCCATATGATGTGCGACGGTAAATTCGAAGGATTCCAGTGCGAAATATGCGGCAAGAAATACGCCGAGGAGTGGAAAGTCAAAGAACACCAGAGGAATTCGCACAAAGGCAAGAATTTGCTCCAATACAAGTGCGACATCTGCGATAAAAAGTATACTCGTAAATGGCTGGTCAAGTCGCACAAAAGGCAAGCCCACAAAGACCACTTGGAAGAATACCAATGCGAGTACTGCGATAAAAAGTTCACCGAAAAATGGATAATCAAATTACATCTGCAAACTGTTCACAATATGAATAACTCGAACGACGACAACGCCAACTCTCCGGTTACTGTTAAGGCTACCTCTGACGAACTAGAAAAGTTGCTAGAATATCATCAGAGAATATCGTGCGATGATACGAAGCCCCTCAACTTAGAAGAGTCATCCTTAGACGAGGGTAAACCCCGGCGAAAACCTTTCGAATGTGAACTGTGTGGTAAAATGTTTGCTACCAAGCAAGGCATGAAGAATCATTTGTACGCTGAGTTAAATATGCGCAAATACGTTTGCGAAATCTGCGGGAAAAGGTATAATTGGTGGATGGGTTTGAAAGAGCATTCCATCATGAATCACGGGGCGAAAGAATTCGTCTGCGATCATTGTGGCAAAGATTTTCCAACGAAGAAACGTTGCCGAGATCATTTATCCGTTCACTCGGAAGAACGACCTTATAATTGTAAATGTGGTAATGCCTTCAAGTTGAGGAGATATTTGGCGAAGCATCAGAAACGATGCAGTAAAGCTATTAAAAAAGAGTAG
Protein Sequence: YQVTEVVLDRPQQNIPDERRNRIVESVAQSHQDRNSPHNSGPEPSYRIDPHSGLPQEMMFISYNESAPHTTADDDTLESCDVEKLVDNFIKEEELQIDDENSGESKENNKILPEEYEKFVVQYNKTSIKYMQCDKCQFICRPLTHIFEKHYKTHFDDADIDEKPDINMLQQMNETPSEPVEEPEKIFCCDICNAQFSTERSLHAHQKIHRARVFSCSLCGLIYKTRFELKVHKKTHASQVVSLVCNMCGKNFKTKSGYNHHRNNVCVEYKCEICGDMFLVKSVLQDHLKKVHDIEEDISVAEPEPSLKKEQASSVCPICGKLVTENALSRHLNLHSEDKPYICDLCGKSFRIKWSLREHIMIEIGMKDYVCEICGKKFVIQAYLNKHMRFHMMCDGKFEGFQCEICGKKYAEEWKVKEHQRNSHKGKNLLQYKCDICDKKYTRKWLVKSHKRQAHKDHLEEYQCEYCDKKFTEKWIIKLHLQTVHNMNNSNDDNANSPVTVKATSDELEKLLEYHQRISCDDTKPLNLEESSLDEGKPRRKPFECELCGKMFATKQGMKNHLYAELNMRKYVCEICGKRYNWWMGLKEHSIMNHGAKEFVCDHCGKDFPTKKRCRDHLSVHSEERPYNCKCGNAFKLRRYLAKHQKRCSKAIKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01472630;
90% Identity: iTF_00194618;
80% Identity: -