Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01057280.1:1170-3721[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.6e-06 0.00017 22.5 5.4 2 23 214 235 213 235 0.96

2 19 9.4e-05 0.0096 16.9 1.5 3 23 245 265 244 265 0.97

3 19 1.5e-07 1.5e-05 25.8 0.8 1 23 271 293 271 293 0.98

4 19 5.2e-05 0.0053 17.7 5.0 1 23 299 321 299 321 0.96

5 19 0.00036 0.036 15.1 1.2 1 23 327 349 327 349 0.98

6 19 4.7e-05 0.0048 17.9 0.3 1 23 355 377 355 377 0.95

7 19 8.8e-07 9e-05 23.3 1.2 1 23 383 405 383 405 0.99

8 19 6.6e-08 6.7e-06 26.9 1.7 1 23 411 433 411 433 0.97

9 19 3.9e-06 0.0004 21.3 0.8 1 23 439 461 439 461 0.97

10 19 5e-07 5.1e-05 24.1 0.4 1 23 467 489 467 489 0.98

11 19 3.1e-06 0.00032 21.6 1.0 1 23 495 517 495 517 0.98

12 19 4.3e-07 4.4e-05 24.3 0.4 1 23 523 545 523 545 0.97

13 19 4.8e-06 0.00049 21.0 0.0 1 23 551 573 551 573 0.94

14 19 0.0028 0.28 12.3 0.0 2 21 591 610 591 611 0.94

15 19 0.0068 0.69 11.1 0.0 1 23 639 661 639 661 0.92

16 19 9.7e-07 9.9e-05 23.2 1.8 2 23 669 690 668 690 0.96

17 19 2.9e-06 0.0003 21.7 4.6 1 23 696 718 696 718 0.97

18 19 2.9e-05 0.003 18.5 3.3 1 23 724 746 724 746 0.98

19 19 0.00038 0.038 15.0 0.6 2 23 753 774 752 774 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.6e-06	0.00017	22.5	5.4	2	23	214	235	213	235	0.96
2	19	9.4e-05	0.0096	16.9	1.5	3	23	245	265	244	265	0.97
3	19	1.5e-07	1.5e-05	25.8	0.8	1	23	271	293	271	293	0.98
4	19	5.2e-05	0.0053	17.7	5.0	1	23	299	321	299	321	0.96
5	19	0.00036	0.036	15.1	1.2	1	23	327	349	327	349	0.98
6	19	4.7e-05	0.0048	17.9	0.3	1	23	355	377	355	377	0.95
7	19	8.8e-07	9e-05	23.3	1.2	1	23	383	405	383	405	0.99
8	19	6.6e-08	6.7e-06	26.9	1.7	1	23	411	433	411	433	0.97
9	19	3.9e-06	0.0004	21.3	0.8	1	23	439	461	439	461	0.97
10	19	5e-07	5.1e-05	24.1	0.4	1	23	467	489	467	489	0.98
11	19	3.1e-06	0.00032	21.6	1.0	1	23	495	517	495	517	0.98
12	19	4.3e-07	4.4e-05	24.3	0.4	1	23	523	545	523	545	0.97
13	19	4.8e-06	0.00049	21.0	0.0	1	23	551	573	551	573	0.94
14	19	0.0028	0.28	12.3	0.0	2	21	591	610	591	611	0.94
15	19	0.0068	0.69	11.1	0.0	1	23	639	661	639	661	0.92
16	19	9.7e-07	9.9e-05	23.2	1.8	2	23	669	690	668	690	0.96
17	19	2.9e-06	0.0003	21.7	4.6	1	23	696	718	696	718	0.97
18	19	2.9e-05	0.003	18.5	3.3	1	23	724	746	724	746	0.98
19	19	0.00038	0.038	15.0	0.6	2	23	753	774	752	774	0.95

Sequence Information

Coding Sequence: ATGcatttaattcttgaaaacaaaGACATGGCAACCGCCAACGTCGCTTATTCACTTAATCAAGATTCACTGGTAAATCAGAGTGACGCTGTTAAAGCTAATTCGAtagcaaatttgaattcaggcACTAACCATGCGgccgttgaaaattttgacgatgCATATGTGAAAAGatttcatgaaaatgtCGGATATAGCTTCCTCATCCCTTCATTGCAGGGAAACCAAGACGATTCTTTGGCAGGCGTCAGTTTAGATGCAATTTCTAAAGTGATGGGTTCAAATTGCAGCGTTACCACAATTCCTGAAAGCCAGTTTCAAACGATGATTGTTAAAATGAATCATAATCTTTTGGATGAGCATCCGTATCAAACAGCGTACGTCCTACAAGAAGACATCAACAATTCATCTATGAACGACGTGCAAATGCCATCtgcatttttaccaaaatccgGCGATTCGTTGAAGCATGACCTGAAACTGacgcaaaaattacaaaacgataaaaatctaCCTTTAATCAACATGCTTCCCAGTTGTTCGGATTTACCTCCCCATGTTCACTTGAATGGCCATCACCATAACAGCGTCTCAAACGAGCCTCGTAATCAGTCAGCCGAAGTACGAACTAACGAATTACAGTGTCACGAATGTGGCAAACATTTCGCCAATAAGCATAATTTAAAAGTACACATGTACATTCACACCGGCGAAAAAAGGGAGAAATCTTTTTGCCCTACGTGTAAAAAAGGATTTGTAAAGCCTTGCGATTTACGCCGACATATGGTCATTCATTCCGGTATAAAACCATTCGATTGTAAAGAATGCGGTATGACTTTTGCCAATCCGTCTACGCTGAAGCAACACACACGTACTCATTCCGACAAGAAACCTCATCATTGCACCCAATGTGGTAAATTATTCACTTCGAATTATTCTCTACAAAGACATCTGATAAGTCATCGAAACACACCTTTGTTTAAATGCGACAAATGCGACGCTAATTTGAATTCgaaatatgatttaaaaatacatacgatGAAACACAACGGCGCTTTACCGTATCCTTGTACCGTATGTAGTAAAAGTTTCGGTAAACCTTCGGATTTGAGTCGGCATTTCGTCGTTCATACTGGAGAACGACCTTTTCAATGTAATTTGTGCGACAGCACGTTTACGAATTCTAGCAATCTCCGAATGCATTTGATAACTCATTGTAAAGTGAAACCACATCCTTGTAATCTGTGCGATAAATCGTTTCGTCGACCTAGCGATTTAGAAAGACACCGATTGACTCATACAGGTGAACGTCCGTTCATTTGTCGTATATGCAATATGGCTTTTAccacaaattataatttgaaaatacactTGCTGAAGCACAGCGGAGGTCTTCCATATCCTTGCTCATTGTGCGAGAAATCGTTCAGCAAACCTTCCGAGCTACAGCGTCATACGTTGGTGCATTCTGGAGAACGACCATTCCGTTGTGATCAATGTTCGATGAGTTTTACCAACGCTAGCAATCTGAAATCGCACGGATTGACCCACAGTGGCAAGAAACCTTACGCTTGTAAAGCCTGcggtaaaacattttctagaCCTTCGGATGTCAAACGTCACCTCTTGACGCATATGGGAGCCAGACCTTTCGCCTGCTCCGTATGCGGGATGGCATTCGCCGACtcttccaatttgaaaaaacacgcTCTAGCTCACGCTAAAGGTAATCTAGATAAGGACGATAAAACCCCAGTAGGATATACGAACCGCTGTAACATTTGCGGAGCCGTATTTCTTACCAACGAAGAACTTCAAAGACACACTATGGTGAACGAGTGCCGTCCCGAAACTCATCCTCTGGACGCCTTCTCGTATCTCAAAGAGGATTCCACTCCTGGCGTCAAACCAACCTACACCTGTGTAGTCTGCGGCGCCGAATTTGCTCACGCTATATCATTACAAGAACACGCCGTCGAACATGCCAACGTTATGAATGCCTGTCGATGCGAAATATGCGATAAAACTTTCATCCAAGAGTCCTACCTCAAGATGCATATGGCCACACATACCGAACTCAGACCGCATTCGTGCGATATTTGCGGCAAAAGTTTCAAGAGCATGTCTCATCTGAAGAATCACCGCTCTATCCATTCTGGAGTTAAACCCTACACGTGCCCTACTTGCGGTAAAACCTTCCTAAAACATTCGTCGTTGAGACGGCATCAAACCATACACGATCGCGTTAATCCGGTCGTTTGtaatatttgtaataaaactTTCCTTAATCAAGAATACTTGAGGAAGCATAGCGTTACACATGCGACGTAA
Protein Sequence: MHLILENKDMATANVAYSLNQDSLVNQSDAVKANSIANLNSGTNHAAVENFDDAYVKRFHENVGYSFLIPSLQGNQDDSLAGVSLDAISKVMGSNCSVTTIPESQFQTMIVKMNHNLLDEHPYQTAYVLQEDINNSSMNDVQMPSAFLPKSGDSLKHDLKLTQKLQNDKNLPLINMLPSCSDLPPHVHLNGHHHNSVSNEPRNQSAEVRTNELQCHECGKHFANKHNLKVHMYIHTGEKREKSFCPTCKKGFVKPCDLRRHMVIHSGIKPFDCKECGMTFANPSTLKQHTRTHSDKKPHHCTQCGKLFTSNYSLQRHLISHRNTPLFKCDKCDANLNSKYDLKIHTMKHNGALPYPCTVCSKSFGKPSDLSRHFVVHTGERPFQCNLCDSTFTNSSNLRMHLITHCKVKPHPCNLCDKSFRRPSDLERHRLTHTGERPFICRICNMAFTTNYNLKIHLLKHSGGLPYPCSLCEKSFSKPSELQRHTLVHSGERPFRCDQCSMSFTNASNLKSHGLTHSGKKPYACKACGKTFSRPSDVKRHLLTHMGARPFACSVCGMAFADSSNLKKHALAHAKGNLDKDDKTPVGYTNRCNICGAVFLTNEELQRHTMVNECRPETHPLDAFSYLKEDSTPGVKPTYTCVVCGAEFAHAISLQEHAVEHANVMNACRCEICDKTFIQESYLKMHMATHTELRPHSCDICGKSFKSMSHLKNHRSIHSGVKPYTCPTCGKTFLKHSSLRRHQTIHDRVNPVVCNICNKTFLNQEYLRKHSVTHAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00725731;
90% Identity: iTF_01472619;
80% Identity: -