Fvir006893.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01028102.1:62786-65373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5e-07 4.5e-05 23.8 3.3 2 23 224 245 223 245 0.96 2 19 7.8e-05 0.007 16.9 1.5 3 23 255 275 254 275 0.97 3 19 1.2e-07 1.1e-05 25.7 0.8 1 23 281 303 281 303 0.98 4 19 9.8e-05 0.0089 16.6 4.1 1 23 309 331 309 331 0.96 5 19 0.00032 0.029 15.0 1.3 1 23 337 359 337 359 0.98 6 19 1.4e-05 0.0013 19.2 0.3 1 23 365 387 365 387 0.95 7 19 7.3e-07 6.6e-05 23.3 1.2 1 23 393 415 393 415 0.99 8 19 1.9e-07 1.7e-05 25.1 1.6 1 23 421 443 421 443 0.97 9 19 3.2e-06 0.00029 21.3 0.8 1 23 449 471 449 471 0.97 10 19 4.1e-07 3.7e-05 24.1 0.4 1 23 477 499 477 499 0.98 11 19 2.1e-06 0.00019 21.8 1.3 1 23 505 527 505 527 0.98 12 19 3.5e-07 3.2e-05 24.3 0.4 1 23 533 555 533 555 0.97 13 19 4e-06 0.00036 21.0 0.0 1 23 561 583 561 583 0.94 14 19 0.0025 0.22 12.2 0.1 2 19 602 619 602 622 0.94 15 19 0.0056 0.51 11.1 0.0 1 23 649 671 649 671 0.92 16 19 8e-07 7.3e-05 23.2 1.8 2 23 679 700 678 700 0.96 17 19 1.4e-06 0.00012 22.4 4.0 1 23 706 728 706 728 0.97 18 19 3.5e-05 0.0032 18.0 3.5 1 23 734 756 734 756 0.98 19 19 0.00031 0.028 15.0 0.6 2 23 763 784 762 784 0.95
Sequence Information
- Coding Sequence
- ATGCACTTGACTCTTGATAACAAAGACATGGCAACCGCCAATATCGcttaTTCACTCAATCAAGATACTCTCGTTAATCATAATGACGCGAGTAAAGTCAATTCTTTGGGAAATTTGAATTCAGATAGTACTCATTCGGTTATTGAAAACTTTGATGATGCGTATGTAAAAAGATTCCATGAAAATGTTGGATATAGTTTTCTAATCCCTCCATTACAGGGCAATCAAGATGATTCTCTGACTGGAGTTAGTTTGGAGGCGATTTCGAAGGTGATGGGTTCAAACTGCAGTGTTACCACAATACCAGAAAGTCAATTTCATatgattatgaaaatgaacCCTAGTCTTCTAGATGAGCATCCGTATCAAACAACTTATGTCTTGCAAGAGGACATGAACAGCACATCTGTCAGCGATATTCATATGCCATCAATGTATTTGCCAAAATTGACTGATTCGTTGAAAACTGATACCAAATCATTGGAAAAACTACAAAACGACAAAACTTTGCCTTTAATCAATATGCTTCCTAATTGCTCAGATTTACCTCCACATGTTCATTTAAATGGCCATCACAGCAATAACAACAACACTAACAACAGCAGCAATCATAGCAATGTATCAACCGAGCCTCGTAATCAAACTACAGAGACCAGAACGAACGAATTACAGTGTAATGAATGTGGTAAACATTTCGCCAATAAGCATAATttgaaagtacatatgtacattcataccggtgaaaaaagagaaaagtcTTTCTGTCCTACTTGTAAAAAAGGATTCGTAAAACCGTGCGATTTGCGTCGCCATATGGTTATACATTCTGGTATAAAACCGTTTGATTGCAAAGAATGTGGTATGACTTTTGCCAATCCTTCAACCTTGAAACAACATACTCGTACTCATTCTGATAAAAAACCTCATCATTGTGTCCAATGTGGTAAATTGTTCACTTCGAATTATTCTCTACAAAGACATTTGATTAGTCATCGAAATACCCCATTATTCAAATGCGACAAGTGCGAAGCTACTCTAAATTCGAAATacgatttgaaaatacacacTATGAAACACAACGGCGCTTTACCATATCCTTGTACGGTGTGTACAAAAAGCTTTGGCAAACCCTCGGACTTAAATCGACATTTCGTCGTTCATACCGGAGAACGTCCGTTTCAGTGTAATCTGTGTGACAGCACGTTTACCAATTCTAGTAACCTGCGTATGCATTTAATAACTCATTGCAAAGTTAAGCCGCATCCTTGTAACCTGTGCGAGAAATCTTTCCGACGACCTAGCGACCTAGAAAGACATCGTTTGACCCATACTGGCGAACGTCCGTTCATTTGTCGAATTTGTAATATGGCTTTTACCAcgaattataatttgaaaatccatCTACTGAAGCACAGTGGAGGTCTTCCATATCCTTGTTCACTGTGTGAGAAATCGTTTAGTAAACCGTCAGAATTACAACGCCACACTTTGGTACACTCCGGCGAACGACCATTTCGTTGCAATCAGTGTTCGATGAGCTTCACAAACGCTAGCAATTTGAAATCTCACGGATTAACTCACAGTGGTAAAAAACCATACGCTTGTAAAGCTTGCGGGAAAACTTTTTCTAGACCGTCGGACGTGAAACGACATCTATTAACGCACATGGGAGCTAGACCATTCGCTTGTTCTGTCTGCGGTATGGCGTTCGCCGATTcgtctaatttaaaaaaacacgcTCTCGCCCACAATAAAAGTAACCCGGACAAGGACGATAAAGGTGTCAATTTAGGATACTCAAATCGTTGTAATACTTGCTCAGCTGTCTTCCCGAACAGCGAAGAACTGCAAAGGCATTCGTTGAACGAATGTCGGTCAGAAAATCCTTCCATGGATGCGTTTTCGTACCTTAAAGAAGATCACATCCCTAGTACGAAACCAACCTATACTTGCGTAGTTTGTGGCGCAGAATTTGCTCACGCTATTTCGTTACAAGAACATGCCGTCGAACACGCAAATGTTATGAACGCGTGTCGTTGTGAAATTTGCGATAAAACTTTCATTCAGGAATCGTATCTCAAGATGCATATGGCCACGCATACCGAGCTCAGGCCGCATTCCTGTGAAATGTGTGGGAAAAGTTTCAAAAGCATGTCACatctaaaaaatcacatttccaTACATTCAGGGGTTAAACCATTCACTTGCCCTACTTGTGGTAAAACTTTCCTGAAACATTCATCTTTACGACGACATCAAACTATTCATGATCGTGTCAACCCAGTCGTTTGtaatatttgtaataaaacTTTCCTTAATCAGGAATATTTAAGGAAGCATAGTGTTACACATACGACGTAA
- Protein Sequence
- MHLTLDNKDMATANIAYSLNQDTLVNHNDASKVNSLGNLNSDSTHSVIENFDDAYVKRFHENVGYSFLIPPLQGNQDDSLTGVSLEAISKVMGSNCSVTTIPESQFHMIMKMNPSLLDEHPYQTTYVLQEDMNSTSVSDIHMPSMYLPKLTDSLKTDTKSLEKLQNDKTLPLINMLPNCSDLPPHVHLNGHHSNNNNTNNSSNHSNVSTEPRNQTTETRTNELQCNECGKHFANKHNLKVHMYIHTGEKREKSFCPTCKKGFVKPCDLRRHMVIHSGIKPFDCKECGMTFANPSTLKQHTRTHSDKKPHHCVQCGKLFTSNYSLQRHLISHRNTPLFKCDKCEATLNSKYDLKIHTMKHNGALPYPCTVCTKSFGKPSDLNRHFVVHTGERPFQCNLCDSTFTNSSNLRMHLITHCKVKPHPCNLCEKSFRRPSDLERHRLTHTGERPFICRICNMAFTTNYNLKIHLLKHSGGLPYPCSLCEKSFSKPSELQRHTLVHSGERPFRCNQCSMSFTNASNLKSHGLTHSGKKPYACKACGKTFSRPSDVKRHLLTHMGARPFACSVCGMAFADSSNLKKHALAHNKSNPDKDDKGVNLGYSNRCNTCSAVFPNSEELQRHSLNECRSENPSMDAFSYLKEDHIPSTKPTYTCVVCGAEFAHAISLQEHAVEHANVMNACRCEICDKTFIQESYLKMHMATHTELRPHSCEMCGKSFKSMSHLKNHISIHSGVKPFTCPTCGKTFLKHSSLRRHQTIHDRVNPVVCNICNKTFLNQEYLRKHSVTHTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150629; iTF_01491274; iTF_00194593; iTF_01472619; iTF_01262767; iTF_01263807;
- 90% Identity
- -
- 80% Identity
- -