Tvar020469.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028279.1:5651322-5654603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0027 0.23 12.6 2.1 3 23 147 168 146 168 0.98 2 18 7.6e-05 0.0063 17.5 1.4 1 23 177 200 177 200 0.97 3 18 0.0038 0.32 12.2 2.4 1 23 212 235 212 235 0.96 4 18 0.0011 0.088 13.9 1.2 1 23 244 267 244 267 0.96 5 18 0.0023 0.19 12.9 3.0 1 23 278 301 278 301 0.97 6 18 0.00014 0.012 16.7 1.1 2 23 329 351 328 351 0.97 7 18 0.00048 0.04 15.0 1.5 2 23 361 383 360 383 0.96 8 18 0.083 6.9 8.0 1.0 2 19 388 405 387 408 0.92 9 18 0.00085 0.071 14.2 0.0 2 23 413 435 413 435 0.96 10 18 0.057 4.8 8.5 2.0 3 23 445 466 444 466 0.97 11 18 2.7e-05 0.0023 19.0 2.4 1 23 471 494 471 494 0.97 12 18 0.00076 0.063 14.4 1.3 3 23 507 528 505 528 0.93 13 18 0.37 31 5.9 5.2 1 23 553 576 553 577 0.91 14 18 0.48 40 5.6 0.1 2 23 583 604 582 604 0.92 15 18 0.00076 0.063 14.4 2.5 2 23 611 632 610 632 0.97 16 18 0.38 31 5.9 0.7 2 23 639 662 638 662 0.94 17 18 0.029 2.4 9.4 0.1 1 23 698 720 698 720 0.96 18 18 0.28 24 6.3 2.7 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGTCGCTAAAAgagaaaaatgaaaacaaatcaTTACGTAGAGATCCAACCTCATTCCTGCCCGAAGAGGAGATGTCATATGAAtttaagaaaaagaagaaaaagaaaaagaaaatccAAGAGGATCCGTTCAAAGACCTCGATCAGGACAGGAAGCACTTTCCGGAAGTGCCAACGTTAGCTTTAGATCCGGAGATTAGTATTAAAGTTGAAAATATTGAGGTTGAGCTGAATTTTGATGAGTATGCAGCTGTTGATGACGTTGATTACGCAGACTCGTACCAAAATGATAACCACAATCTAGAACCAATAGTGAAACTGGAGGAACAAAGTCACGAAGGTGCCATTTTGACTTTCGAGAAGATTCTCAACGAAAAGAAACCTAGAAAAACAGATATCAAAGTTGAGGTTCCCGAAGAACCCGTACAAAGTGTACTATGCCAAGTTTGCCATTTAGTCTTTAAGTCCGAGAAAACTCTTGCTATGCACCAGAAAAGGCAACACAAAGTCTTTAGAAAGTACTGCAAACACGTTTGCGATTATTGCAGCATGTCTTATGACTCAAAAAATAGTTTGATAGCTCATATTAGAAGGAAACACGGTCCTGATTCTGCTGTAGAGGACTCTGAAGATCATACTTGCGATGTGTGTTCCTTGGTGTTTAAGGGAAAATCAAGATTACGTATGCATTTGTCACGAAAACATGGAAAATACGAAGATTCTTTCAAACATATATGTTCAGAATGCGGCCTATCTTACGAGAAATACCGAAGCTTGATGGTGCATATACAGAGAAAGCATTCTGGTATTCAACCTATATCAAACCAGTGGTACAATTGTCCATTCTGTGCCAAAATCTTCACCAAACGAGAAACCTATGCTCGTCACATACATAGAAAACACAAAGTAAACGACGACACTAAAGTGAAAACGGAAAATGACGATGAATTTGCAGGTTGTAAAAACGAGATAACCGGTGAAATTACTTGCAAGCAATGCCCTTTAATGTTTACgtcaattaattatttgaagTTGCATATGAGAAGGAAGCATAATGCTTTACAAGAATCCTTCCAGCTGAAATGTCGGATCTGTAACCTATCTTATGATAAACTCGAGAGTCTAAAACGCCATGTGCGACGAAAACACGATATGAGGACTTACTGTAGAATTTGCAGAAAGAAATTCGACAGCAAAGAAGCGTATTTAAACCATTCGCACGTAAAATGTATTAGAGAATGCACAATTTGCGGCTTAATCTTCGCATCGGACGTTGCTCTCGTCAAGCACATGAAATTGACGCACAAAATTGAGActgaaaaaacagttttttgcaGCATTTGCAACCAAGGTTTTCACGAAAAGAGGCAACTTAAACCCCACATGATGAAAGTGCATATGAATATACGATACACGTGCAAAATATGCAGCAAAAGTTTGAAAACTAAAGAGAGTTATAGACGACATTTGATGGTGAAACATCCGACTCAAAAATTAGTGAATGTCACTCTTCAAAACTGCACGTATTGCTCAGAATCGTTTAAAGACGAATTCGAACTGAGCAAACACATACACGCCGATCATTTATCCACAGACAAGACAGACGAATTAGTTGAAATTAAAAGTGAAAACGTAAAAGATGAGGTCAGAGAACCCTATCATTGCACAAAATGTTCCGACACATATACAACTTGGAATCAATTGAAGTTGCATTTCGAACAGAATCATCACCAAGCTCAAGAAACTCAGTGCCAAGTCTGCGGCGAAATGGTGGTTGTAAAAGAATTGGAAAAACATATTAAAGCGCAACACACTGAAGAAATAGAAATGAAGTGCAATTATTGCGATTTTAAAACCACGAATAAAGTTAGTTTGACTCAGCACACGCTAAGACATAAAAATGCCACGACAATTCGTTGCGAATTCAACGGTTGTCGATATAAAACTTATTATCCTGGTGCTATGGAGAAACATAAGCGAAGACACGCCGATTTGGGCGTCAAATTACAATGTACCCAATGCCCTTTTCAAACTATGAACAAATACATACTGAGATATCATGAAGAAGCCCACGCAACGGGTAAAAAACGTTACGCTTGCGACCAATGTGATTATGCCACGATCTTACCCGCGAATTTAGTACAGCACAAATATAAACATTCGACTGAGAAACGATTTAAATGTGAAGTATGTTCCTTTGCAACGAAGTATAATACGTCTTTACGCTTTCATGTGAGAAAAAAACACTGTGATCTACCGATTTTAagttaa
- Protein Sequence
- MSLKEKNENKSLRRDPTSFLPEEEMSYEFKKKKKKKKKIQEDPFKDLDQDRKHFPEVPTLALDPEISIKVENIEVELNFDEYAAVDDVDYADSYQNDNHNLEPIVKLEEQSHEGAILTFEKILNEKKPRKTDIKVEVPEEPVQSVLCQVCHLVFKSEKTLAMHQKRQHKVFRKYCKHVCDYCSMSYDSKNSLIAHIRRKHGPDSAVEDSEDHTCDVCSLVFKGKSRLRMHLSRKHGKYEDSFKHICSECGLSYEKYRSLMVHIQRKHSGIQPISNQWYNCPFCAKIFTKRETYARHIHRKHKVNDDTKVKTENDDEFAGCKNEITGEITCKQCPLMFTSINYLKLHMRRKHNALQESFQLKCRICNLSYDKLESLKRHVRRKHDMRTYCRICRKKFDSKEAYLNHSHVKCIRECTICGLIFASDVALVKHMKLTHKIETEKTVFCSICNQGFHEKRQLKPHMMKVHMNIRYTCKICSKSLKTKESYRRHLMVKHPTQKLVNVTLQNCTYCSESFKDEFELSKHIHADHLSTDKTDELVEIKSENVKDEVREPYHCTKCSDTYTTWNQLKLHFEQNHHQAQETQCQVCGEMVVVKELEKHIKAQHTEEIEMKCNYCDFKTTNKVSLTQHTLRHKNATTIRCEFNGCRYKTYYPGAMEKHKRRHADLGVKLQCTQCPFQTMNKYILRYHEEAHATGKKRYACDQCDYATILPANLVQHKYKHSTEKRFKCEVCSFATKYNTSLRFHVRKKHCDLPILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236055; iTF_00236834;
- 90% Identity
- -
- 80% Identity
- -