Bmor013562.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114963.1:1681862-1685053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0016 0.089 13.3 2.5 3 23 147 168 145 168 0.96 2 19 0.00029 0.016 15.6 1.5 1 23 177 200 177 200 0.97 3 19 0.0014 0.079 13.5 2.7 1 23 212 235 212 235 0.96 4 19 0.0014 0.078 13.5 1.5 1 23 244 267 244 267 0.97 5 19 0.00014 0.0077 16.6 2.1 1 23 278 301 278 301 0.97 6 19 6.4e-05 0.0035 17.7 0.8 2 23 331 353 330 353 0.97 7 19 0.00045 0.025 15.0 1.5 2 23 363 385 362 385 0.96 8 19 0.024 1.3 9.6 1.4 2 19 390 407 389 410 0.92 9 19 0.00014 0.0077 16.7 0.1 2 23 415 437 414 437 0.97 10 19 0.13 7.3 7.3 1.9 3 23 447 468 446 468 0.96 11 19 5.6e-05 0.0031 17.9 3.4 1 23 473 496 473 496 0.95 12 19 0.00018 0.01 16.3 2.1 3 23 509 530 507 530 0.96 13 19 0.0005 0.028 14.9 1.3 1 23 556 579 556 579 0.92 14 19 0.029 1.6 9.4 0.3 2 23 586 607 585 607 0.93 15 19 0.00091 0.05 14.1 2.0 2 23 614 635 613 635 0.97 16 19 1.2 65 4.3 1.6 3 23 643 665 641 665 0.92 17 19 7.4 4.1e+02 1.8 0.8 1 23 672 694 672 694 0.81 18 19 0.017 0.96 10.1 0.1 1 23 701 723 701 723 0.97 19 19 0.27 15 6.3 2.7 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTAAAACTGCACAGTGAAAACAAGCCATTGCGAAGGGATCCAACATCATTCCTACCTGAGGAGGAGATGTCATATGAATTCAAAAAGAAGAAAAAGAAGAAAAAAAAGATCCAGGAAGATCCATTCAAAGATTTGGAAATAGAACGCAAACATTTTCCAGAGGTGCCAACATTCGCTTTAGACCCAGAAGTAAATATTAAAGTAGAGAATATTGAGGTGGAATTGAACTTCGATGAGTATGCCGATGATGCTGGTAACACTGAGCCGTTACAAAACGATATCATGGACATGGAACCAATTGTTAAACTCGAAGAACAAAGTCATGAAGGTGCCATATTAACATTTGAAAGTGTTGTCAATGAAAAAAATGTTGTAAAATGCAGTCCGAAAATCAAGGTAGAAGCGGAAACTGTAACTAATGACAACATAATATGCCAAGTTTGCCATCTAGTCTTTAAGTCTGAGAAAACTCTTTTCATGCATCAGAAAAGGAAGCACAAAGTATTTCGGAGGTTCTGCAAACATGTATGTGACTACTGCAGTATGTCTTATGATTCAAAGAATAGTTTAGTTGCACATATTAAAAGAAAACACGGACCTGAGTCTGTGGAAGAAGACAATGAGGACCACACTTGTGAGGTATGCTCGTTGGTTTTCAAAGGAAAGTCAAGGTTGCGGATGCATATGACAAGAAAACATGGAAAATATGAGGATTCATTTAAACATGTTTGCTCAGAATGCGGTCTGGCTTATGAGAAACACAGAAGCTTAATAGTGCATATACAAAGAAAACATTCTGGGGTACAACCAACCTCGAATCAATGGTTCAACTGCCCGTTTTGCACGAAAATATTTAGCAAACGGGAAACCTATGCCCGTCATATACAAAGGAAGCACAAAGTCAGTGATGAGCCGAATGTGAAATCTGAGAATGCTGATGACGAAAATTTAGCAAGTTTCCGAAATGAGGTGACCGGTGAGATTACATGTAAAGAGTGTCCATTGATGTTCACATCCATTAATTATTTAAAGCTACATATGAGGAGAAAACACAATGCCTTGCAGGAGTCATTCCAATTGAAATGCCGAATATGCAACTTGTCCTATGACAAATTAGAGAGTTTAAAACGTCATGTCAGAAGAAAACATGACATAAGAACATACTGTAGGATATGCAAGAAAAAATTCAATAGTAAAGAAGCATACCTGAATCATTCACATGTGAAATTCATAAAGGAATGTTCGATATGTGGACTTATATTTGCTACAGAAGTTGGCCTCGCGAAACATCTGAGGCGTTTACACAAAATTGACACCCCAAAAACTGTCTTTTGTAATATATGCAATCAAGGATTCCACGAGAAGAGACAGCTAAAGCCGCATTTGATGAAAGTTCATATGAACATAAGGTACACTTGTAAATATTGTAATAAAACTTTGAAGACTAAAGAGAGTTATAGACGTCATTTAATTTTAAAACATCCAACGCAAAAGCTTGTGAATGTTAACCTGCAAAATTGTAGTCAATGTTCAGAATCCTTCAAAGATGAGTTTGAATTATGCAAACACATAAACACAGTGCATTTATCTAATTATAAAAACATTGAGAATTTTATAGAAATAAAATGTGAAGATATAAAAGAAGAAATCAAAGATCCCTATCAGTGTACGAAATGTTCAGAAACATATGTAACTTGGAATCAATTGAAATTGCATTTTGAACAAAACCATCATATAGCTGAAGAGACACAGTGTCAAGTGTGCGGAGAAATTGTGTCAACTAAGGAATTGAACAAGCACATGAAAGCCAAACACACTGAATTAACAGAAATGAAATGTAATTATTGCGAATACCGGACCACTTCCAAAGTGAGTTTAACTCAGCACACTCTAAGACACAAAAATGCTACAACAATACATTGCGAATTTAACGGCTGTAGATATAAAACGTATTACCCGGGCGCTATGGAGAAGCACAAAAGGAAACATGCAGATTTGGGAGTCAAATTTCAATGTAGTCAATGCCCATTTCAGAGCATGAATAAGTATATTCTGAAGTATCACGAAGAGGCACATGCAACTGGCAAGAAACGCTACATGTGTGACCAGTGCGACTACGCCACGATCTTACCGGCTAACTTAGTCCAACATAAATACAAGCATTCGACAGAAAAACGTTTTAAATGTGAAGTTTGTTCATTTGCAACGAAATATAATACTTCGTTGCGGTTTCATGTTAGGAAAAAGCACTGTGATCTACCACTTTAA
- Protein Sequence
- MSLKLHSENKPLRRDPTSFLPEEEMSYEFKKKKKKKKKIQEDPFKDLEIERKHFPEVPTFALDPEVNIKVENIEVELNFDEYADDAGNTEPLQNDIMDMEPIVKLEEQSHEGAILTFESVVNEKNVVKCSPKIKVEAETVTNDNIICQVCHLVFKSEKTLFMHQKRKHKVFRRFCKHVCDYCSMSYDSKNSLVAHIKRKHGPESVEEDNEDHTCEVCSLVFKGKSRLRMHMTRKHGKYEDSFKHVCSECGLAYEKHRSLIVHIQRKHSGVQPTSNQWFNCPFCTKIFSKRETYARHIQRKHKVSDEPNVKSENADDENLASFRNEVTGEITCKECPLMFTSINYLKLHMRRKHNALQESFQLKCRICNLSYDKLESLKRHVRRKHDIRTYCRICKKKFNSKEAYLNHSHVKFIKECSICGLIFATEVGLAKHLRRLHKIDTPKTVFCNICNQGFHEKRQLKPHLMKVHMNIRYTCKYCNKTLKTKESYRRHLILKHPTQKLVNVNLQNCSQCSESFKDEFELCKHINTVHLSNYKNIENFIEIKCEDIKEEIKDPYQCTKCSETYVTWNQLKLHFEQNHHIAEETQCQVCGEIVSTKELNKHMKAKHTELTEMKCNYCEYRTTSKVSLTQHTLRHKNATTIHCEFNGCRYKTYYPGAMEKHKRKHADLGVKFQCSQCPFQSMNKYILKYHEEAHATGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCSFATKYNTSLRFHVRKKHCDLPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490361;
- 90% Identity
- iTF_00236055;
- 80% Identity
- -