Tvar010266.2
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- PAXBP1
- Assembly
- GCA_030269945.2
- Location
- AP028267.1:11319156-11327858[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-13 1.5e-09 38.6 0.1 4 151 839 966 836 1004 0.75 2 2 0.0035 34 4.6 0.1 30 76 1093 1140 1088 1144 0.77
Sequence Information
- Coding Sequence
- ATGTCAATGTTCCGTAAACCGAAGAAGATACAACGGCGTGTGTTCTGTGCGGATGATGATGAAGAGGACGGCGAGCCCGAGGCTCCACCGCCGCCGGTCATCAGCCAGGATAaggagaaaaaagaaaaaaaagccaAAGCGACTGCCCTACTTAGTTTTGCAGACGAAGAGGAAGAAGAATGCGAAGTATTCAAAGTGAAGAAATCGTCACAGAGTAAGAGAATCTCGAAGCGCAAAGAAAAGGAGAAAAGACGTCCATTTGATGGTGATAATAACAAATATGACAGTAACGGCCATGAGGAAATGGACAACGGACTAACACCGATGGAGGTTGACGAACAGAAACCTAGAAAGAAGAAGTCCCTCGAAGGATTGATACTATCAGGGCGGGAGGCTCTCGCGGCCGACGGAGCAGGGGACATGTCAGACGAGGACCTCCTCGAAGACGGGGGCAAGTTCCCCCAGTACCGCGCCGAGTCGGTCAGGGCTGCGCTGGCGGTCGCAGCCGGGGACATTCCCGACGCAGCGCTCATCCACGCCGCTAGAAAGACGCGACAGCAGGCTCGTGAATTAGGAGACTTCGTTCCGTTGAAGACTGATTCAGCGCCAGGATCCAGGTTAGTAAGGGATGATGATGGGTCCGGTGATGATGAGGAGGAAGGCAGGATCGCAGTCAGGGGTCTGGAGCTGCCAAGCGATAAGCCACAACGTGGCACAACGGCTGCGACTCCCGAACGAGAACTAAATAGTGATGTGGAGGAGTGGGAGGAACAACAGCTACAGAAGGCGAGACCGGCCATCGCAGATATTGCGGGAGAGAACATAGAATTGAACCCGTTTGCGGTACCTCTACCTGCAGTCAATACGAAGACTCCGCTCCGACCGTTGCTGGTCGACTCTGAGAGGCAGCCCGCTACAGCACAGGACCTTGTCGACTCACTGAGGAAACGTATGGAAGAGCTTCAAAAGGAGCGATCAGCGGCGTTGTCTCGTCGAGCTGCCTGCGAAAGTCGACTGACGGACACTCTGCGCACGCACTCCACCCGCACCGCACGACGCGCGCCCCTCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGGTACCGTACCGACACACAGCACTCCGCCGACACCGCGTACCGCCGGGCGCAGGCCGCGCGCGGGTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGATGCCGAAATTAGAAGCGTTAGAAGCGCGAGCCCTGGCCATGCACAAACGGAGGTGTGACTTCCTAATGGAGAGGAGGAGAGCTGATGTCAGGGATCAAGCACAAGATGTATTAGCAATGGCAGCTCGCAGTGGGTCTGTGAAGCCAGTAGACTCCGAGGAGAAGATCCGTCGAGCGGCCGAGCGCGAGGGCAGGAGACGAGCCCGCCGCCTCAAGCGCGAGGCCACAGCCGCCGCCGCCGGCGCGCACGTCAAGCACAGGGACGGAGACTCCAGCGACGACGACCTGCCGCCGCACGAGATGCACCACTACACGCAGGAACGGGCTGCAATACGCGCCGAGTCAGCACAGTTGTTCTCGGACGCCCTGTCGGCGTGGCGCGGCGTGCGCGGCGTGTGCAGACGCGTGGCGAGATGGCGCGCCGCCGACCCCGCGCTCTACTGTGACGCGTACGTCGCCGACTCACTGCCGAGACTGCTGGCGCCCTACGTGCGACACGAGATGATATTATGGAATCCCTTGGCTGATGAAGATAATGAGGACTACGAAAGAATGGATTGGTACAAATGTCTGATGATGTACGGCGTTCGCAAGGAGAAGTCCTCGAGCGATTCGTCTGGCTCTGAAACGGAGAGTGACAGCCCTACGACTGTTACAGAGGCTTCGGTACGGGAGGACATTGACCTCATGCTTGTACCGACAATAGTCAGCAGGGTTGTCATACCAAAACTTACAGAGCTAGTGGAGCAGGCGTGGGACCCGCTGTGCGTGCGCGCGTGCGTCCGTCTGCGTGCGCTGGTGTCGCGGTGTGCGTGCGTGCCGGGCGCTCGCTCGTCGCTGTCCCGGCTGTCGGGCGCGCTGCACGCCTCGCTGCAAGCCGCGCTCAACGCTGACGTGTTCCTGCCCGCCTTGCCGCCCGCTATACTGGAAGGTCCGGGGTGTTCATTCTGGAGGCGGTGTGTCGGCGTGGGGGTGCGATTACTGAGGGGTGCTTTGGCTTTAGTACCGCCCCCTGCTTTGCTAAGGGCTGATGAACTAGTGCTGCAGTTAGTGGATCGTCTGAGCTTCGCAGCGGGCGCGGCTGCAGGGGTGCAGGGCGCGTGGGCCGCTCACGTGCTGGCGGGCTGCGTGCCGCGGGACACGCCGCTGCGGGCCCGCGCCATGGCTCCCCTGTACCGACTGGCGCGCACTGCACGGAGCGCGCTACAACCTGACAACCCGCTACATATGAAAGCGTTAGaacaagtgaaaaatatattagcAGAAGCAGAAAAAACTGAAAAACATAAAGATAAAAGTGATtcttcaaattaa
- Protein Sequence
- MSMFRKPKKIQRRVFCADDDEEDGEPEAPPPPVISQDKEKKEKKAKATALLSFADEEEEECEVFKVKKSSQSKRISKRKEKEKRRPFDGDNNKYDSNGHEEMDNGLTPMEVDEQKPRKKKSLEGLILSGREALAADGAGDMSDEDLLEDGGKFPQYRAESVRAALAVAAGDIPDAALIHAARKTRQQARELGDFVPLKTDSAPGSRLVRDDDGSGDDEEEGRIAVRGLELPSDKPQRGTTAATPERELNSDVEEWEEQQLQKARPAIADIAGENIELNPFAVPLPAVNTKTPLRPLLVDSERQPATAQDLVDSLRKRMEELQKERSAALSRRAACESRLTDTLRTHSTRTARRAPLDTAYRRAQAARGYLTDLIECLDEKHSADTAYRRAQAARGYLTDLIECLDEKVPYRHTALRRHRVPPGAGRARVPHRPHRVSRREGTVPTHSTPPTPRTAGRRPRAGTSPTSSSVSTRRYRTDTQHSADTAYRRAQAARGYLTDLIECLDEKVPYRHTALRRHRVPPGAGRARVPHRPHRVSRREGTVPTHSTPPTPRTAGRRPRAGTSPTSSSVSTRRYRTDTQHSADTAYRRAQAARGYLTDLIECLDEKVPYRHTALRRHRVPPGAGRARVPHRPHRVSRREGTVPTHSTPPTPRTAGRRPRAGTSPTSSSVSTRRYRTDTQHSADTAYRRAQAARGYLTDLIECLDEKMPKLEALEARALAMHKRRCDFLMERRRADVRDQAQDVLAMAARSGSVKPVDSEEKIRRAAEREGRRRARRLKREATAAAAGAHVKHRDGDSSDDDLPPHEMHHYTQERAAIRAESAQLFSDALSAWRGVRGVCRRVARWRAADPALYCDAYVADSLPRLLAPYVRHEMILWNPLADEDNEDYERMDWYKCLMMYGVRKEKSSSDSSGSETESDSPTTVTEASVREDIDLMLVPTIVSRVVIPKLTELVEQAWDPLCVRACVRLRALVSRCACVPGARSSLSRLSGALHASLQAALNADVFLPALPPAILEGPGCSFWRRCVGVGVRLLRGALALVPPPALLRADELVLQLVDRLSFAAGAAAGVQGAWAAHVLAGCVPRDTPLRARAMAPLYRLARTARSALQPDNPLHMKALEQVKNILAEAEKTEKHKDKSDSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -