Tvar012983.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- retn
- Assembly
- GCA_030269945.2
- Location
- AP028270.1:7259732-7267111[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-20 1.1e-16 61.7 0.0 12 89 13 88 10 88 0.93 2 2 8.9 2.6e+04 -3.6 0.0 25 38 219 232 204 233 0.72
Sequence Information
- Coding Sequence
- ATGAGGATCGGACGCGCTTGCACACCTCGTAAATCATATATCGGCCGATATGGTACACCAATAAACCGGCTGCCAATAATGGCTAAGTCAGTTTTGGATCTGTACGAGTTGTACAACCTGGTGATCGCGCGCGGTGGTCTCGTGGAGGTGATCAACAAGAAACTCTGGCAGGAGATCATTAAAGGACTACGTTTACCATCTTCTATTACTTCTGCAGCGTTCACTTTGCGTACTCAgtACATGAAGTATTTGTACGACTACGAGTGTGAGAAGAAGAATCTATCAACTCGTAGTGAATTAGATGCTGCCATCGAAGGCAACAAACGGGAGGGAAGGCGTGCTTCAGGACAATATGATGCACAGGCAGCACTAGCAatgCCGCCACTAAACCGCGGAGTGCCAGCATCTCTCGCTCAGCTCTCCCAACACATGCAGCCTCTAACCCTCTCCCTCGGCGGAGGAGTAGCAGGAGTGCCTCGACTGCCGCCGCTCCCTCCCCACCCTACACACCTCACGCAACACGACATCGAGTACAGAGTGAGAGAGTACATGAAGATGATACAGACGCAACGGGATATTATGAGGAATGGTTCGGAGTCCCCCCCCGGCGCCAACGGTCCGACTCCGATGATCTCGCCGCGGGACGCCCTCAACGCGATCGACGTGTCCCGGCTGACGCTCTGGTCTCTCTACAATAATAACAACCACAGCCCACAGCCGGAACTGGAACCGCAACGCGAGGCACTCAACCTTAGCGAGAGCCCCAACTCAGTGAGTAGCGGGTGCAAGCGGGAAGCGTGTCGGTCCCCCGCGCCCCCCGCCAAGCGCCGCACCCCGCGACCTCCCTCGCCCCGCGCACCCTCCCCGCCGCGACAACCCGCGCCGCAGATCAACGGCAACAACGGAATTAATGGACCTGCTGCCTTCAAAATAACCACTAAAGgTGACGCAAGCACCGGCGATCAACAACTCGTCGTCTCAATCGAACTGAACGGCGTCACATACGAAGGCGTTCTCTTCCCTTCACAAAACAGCAACGGTCAAAACGGACACAGGCAGATGGTGTCTTAA
- Protein Sequence
- MRIGRACTPRKSYIGRYGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLTLSLGGGVAGVPRLPPLPPHPTHLTQHDIEYRVREYMKMIQTQRDIMRNGSESPPGANGPTPMISPRDALNAIDVSRLTLWSLYNNNNHSPQPELEPQREALNLSESPNSVSSGCKREACRSPAPPAKRRTPRPPSPRAPSPPRQPAPQINGNNGINGPAAFKITTKGDASTGDQQLVVSIELNGVTYEGVLFPSQNSNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- -
- 80% Identity
- -