Tnig003121.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichopria nigra
Gene Symbol
ZFX
Assembly
GCA_030522945.1
Location
JAPYZR010000922.1:8454-13228[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.8 3.7e+02 3.4 0.1 3 23 25 45 24 45 0.94
2 15 3.5 7.4e+02 2.4 3.9 1 23 840 863 840 863 0.81
3 15 0.00069 0.15 14.1 3.2 2 23 945 967 945 967 0.96
4 15 0.0005 0.11 14.6 0.5 2 23 980 1001 980 1001 0.98
5 15 1.9e-05 0.004 19.0 2.3 2 23 1004 1025 1003 1025 0.97
6 15 0.0073 1.5 10.9 0.3 1 23 1031 1053 1031 1053 0.95
7 15 2.6e-05 0.0055 18.6 4.5 2 23 1060 1081 1059 1082 0.95
8 15 0.12 25 7.1 3.7 5 23 1095 1113 1094 1113 0.97
9 15 2.6e-05 0.0055 18.6 1.4 3 23 1120 1141 1119 1141 0.97
10 15 0.011 2.3 10.4 0.3 2 23 1157 1177 1156 1177 0.97
11 15 7.1e-05 0.015 17.2 0.7 1 20 1183 1202 1183 1205 0.92
12 15 0.00041 0.087 14.8 3.7 1 23 1213 1235 1213 1235 0.99
13 15 0.0025 0.52 12.4 3.2 1 23 1241 1263 1241 1263 0.97
14 15 6.5e-06 0.0014 20.5 3.8 1 23 1269 1291 1269 1291 0.99
15 15 0.0022 0.46 12.5 8.3 1 23 1297 1319 1297 1320 0.96

Sequence Information

Coding Sequence
ATGGACTTGGGCGCATCGCGGAGCGCTTCGGCGCCGGGGAGTTCTGGGGCGCCCGGCGGAGGCGCCGTCGCGTGTCCAGTATGTACGCTCTATCTCCGTGAAGGTATTAGCCTACAGAAGCATTTGGACACGCATCCCAAGGAACAGGTGATCGAGGCACTGATCAAGGCCAGCAGCGGCGTTTCTTCAATTGCTCAGCTCAGTCAAGCCCATCAACCGATGACGGGGCCCATCCCAGCACCTCCTACTCCTCAAGTACCGACACAGTCGCCGTATCCCATAGGGCCGGTATTCGAGTGCCCGCCGATAAATGCCATGATGCCACCACAGTTTGCTTCGTTCAGTTATCaacaatttgtaaacaatgGAACAATGATGATACCTACGCAATATGCAATGGCCAGTCCACAGCCACCACAGGCCAGTCAAATGATGCAGATGTTGTATAATCCTTACGGTATGTATCATCAGCAACAGATTCCTGCAGTTCAGATGATCTCGCCGATAGCAGCTATGCAGGCCTCGACGACGGCTCAAACGGTCATTCCGGCGCCAAGGTTGAGAACACCGGTGAGTGCACCTACTCCTGTGCAATTATCGAAATCCGTACCTGGGGTTACGATGGAAGAACCTAGCAAACAGGTTTTAACACAGATGATACCAGAACCTGAGCGGGTATTGCCAGATATTGAAATGCCATTGTCACCAGTACCTCAGCCACCTGAAGTAATAGAAGAAAGAGTACAACTAGATGAGAGGATTCAGGTAGAGCATAGAGAACAACAGACACAAAACAGTTGTATTCAAGAGAATCGCAACACAGAAACAGGATTCCACGTGGAAATAACAGTGGACACGTATTCAGATTATAAGGCTGAAAGAATTTTACCAGATATCGAAGATATTGAAGATATTCAACCAATCACCATTAATGACGAGGATAAGACGACAGATCAAACAGAATGTCGAGAGATACCAGAATCAGCGGTTCAAATTTTAGATGCCAATATGAGTAAAGAAGACAACTCGAGAAAGGATGGTGGAAGAGACGACGAACGTGATAACATTCAAACGGATGAAATGGAAAAGATTAATGGCAAAGACAAAGTAAATTCTGAATCAAGTATCTCTGAGCCTGCTATAGAAATTGATTCACAAGAATCAAATTGTCCCAATGTTGAACATTTGGAAAATTGTGTTGAACTCACAAATGAAGATCGGAATTGCCAACAAGTTTGTGAATCAATAGAAAAAGTAGCAatttataatgaagaaaaagatGTAGAAGAAGAATACATGAATGAAGATCATGTCGCAAGTGAACCTGAAGAATCTGAAGCATCTGACATTGATGACGAAATGGAACAAGTGATGGAACAAAAGGTTGAATTTTATCAATACAAATGTAGTCAATCACTACCATGTTCGCCTGTTATGACAAAAAAGGTTCATAGGACCTTCTCGCGTGCTTCGCTACGATCTGAATATGGCTCTAGAGaaagtatttgtttatttcctaTGGTGGGTTTTGAAGCTACTACGTTACAAGACTATATAAGAGATACAAAGGATAATTACAGCGATGAGGATATGGAGCTAGAAGAACCACAATGTCATATTCTTAGGCTTCAAATGGAAGCAGGCAAACCTATCTCGCCAGTTTCACCACATTCATTTTCTCATATGGATTCAGAAGCTAGTTGTAGCGAAAGTGAAGACTCGATGCACGAAAAGGATCCAATTAATTATACTCAACTTAATCGAGATAAAATAATTCAGGATGAAAAGttcaatattatagaaaattcacATGAACAAATTACAGATTTTCGGACTCAACATCGTTCGGTTCTCACTGAATATTTAAGTCCCTTTCCAACAATCAGTCATTCTCGTCAAGAACAGCCAGTAATAATGCATGAATCGTATCCTTTATCAAACAGTGAAACATcccataatttattaaatatttccgAGTCCATGGATCCAACAACAAGCAGTGATTCAAAAAGTTACATGTCCTCAAAACCTATTTTACAAAAGCCAACCGCAGAGCTTTTAAATATCAATGAAGATGCTCATACAGGTCCCTTAAATGTTTGTGAATTTGATGCTCTACAAACTTTAGTACCGAGTACTTTCATCAGTGAGTCGTCACAAAAAGCTGTAAGTGGAACGAGTCAACAGTCATTAGATAACAGCGAAACTGGAGCTGGGAATGATGAAGAAGTGAAGAGTGTTAATATGCGGACAGATGAAACCATGCCTCCTCGAGGAGAGCTTTCTGAACAAGAAAGCAATGGATGCACTGAACAATCTACGTGGCAGCTCTACATGGGACAGGAATCATCTCGCATGTCTACGTCATACGATTTAATGGCTCGTGAGAGTTGGGAAGAGTCAGAAGGTTCTGATAATGAAATGGGTGGACCGTTATTGGACAGTCGATCATTAGCTACACATTTTACATCTAGTCTTTTCTTAGATCGAGATCGTAAAACGCCAACTCGCAGGGTATTCAAATGTTCTCATTGTACTGAAGTGTTTGACTGCCCAAAAGAACGTCGCGTGCATAGTACAACAGTACATAAGGAGGCTGGTCCCAGTAGTAGTCAAGACAATATGGATCAACAagaattaaaagatattaaacTACTAGATGGACGTGCCAATGTTTTTGAAGAAATCTTTGTACCAGGTGGTTTACACATTCAGCAAACATATCATCATCAACAACCTCTCTTGCATCAACTGCAACCTCCTCAACACATGAATTCAGTTAAAGCTGACGGCGATATGAAAACAGATGGTCTTTTAGCAGTTGTCGATGCTGTGTGTACACTTTGCAATCAGCGCTTTACTAGTGAGAAATCGCTACAGATTCATCATCGGCGGATGCACGTTACAGAAACTATGAAGCGTGTACgagaaaatgcaaaatgtcaaatttgtaATGAAGAATTTACCTCTGTAGCATCGTTCAATACTCATTTAAAGGTCCATCCTTTAGAATGTGGGCAATGCGGCAAGTACTTTTACCGTAAACAGAACTTTAAACTGCACATGAAGAGACATCTTGGTATCAAACCGTTTCCATGCACTATTTGTGACAAAGCTTTCTTAACAAAGCAAAAGTTAGATGAACACACTAATGGGCATACTGGTAATGCACCAGTTAAGTGCAATTTATGTAATGAAACCTTCCGTCGTTATTCTAATCTCACTCAACACAAAAATCGCCATCATTTGAATATCAAAAAGAAACTCAAAGATTATATTTGCCATTGTGGTGAGGTGTTTCACACAAAGAAGAAGTTGGCTTGGCATAAGGAGACGCATGATCTAAAGCCAAAGGCATGTTCGTATTGCAATGAGAGATTCATTCATATGGCCAGCTTGACAAGACACATGCGTCGTGCCCACAATCGTCGTTTTGTGCCCGATGCCCAACGGGAAAGCGAGAACGTTGAGTGTCCAATCTGCAAGTGCATCTATTTACGTTCGTCATTGGCGGTGCACATGCGTGTACATAACGGGGAGAGACCGTACGAATGCCAGGTCTGCTCGAAAGCTTTTAGTACTAAGTGGAATCTCCAATTGCATAAGTGGACGCATGCAGCACGCAGCACCAAGCCATATAAATGTACCCAGTGTAGTTCAGCTTTTTATCGTCACAGTGATTACACTGCTCATATGAATTCCCACCGCAATGTGCGACCTTATACATGCAACTACTGCGGCGCTCAATTCATTCGAAAGTACAATTGTTTGCGGCACGTGAAGGAACACGAGGAGAATAAAGCTTATACCTGTGACATCTGCAGTAAAACTTTCCACAGATCGTATTATCTGAAGGAGCATTTACGAGTACACTCGGGTATTCGGCCTTACACCTGTCACATCTGCAACAAGACCAGTAGCACGAAATCGAATCACAATAAACATGTTAGGATTCATCACGCACGCGAGCCTGTAAATACGGAAAACTAA
Protein Sequence
MDLGASRSASAPGSSGAPGGGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIKASSGVSSIAQLSQAHQPMTGPIPAPPTPQVPTQSPYPIGPVFECPPINAMMPPQFASFSYQQFVNNGTMMIPTQYAMASPQPPQASQMMQMLYNPYGMYHQQQIPAVQMISPIAAMQASTTAQTVIPAPRLRTPVSAPTPVQLSKSVPGVTMEEPSKQVLTQMIPEPERVLPDIEMPLSPVPQPPEVIEERVQLDERIQVEHREQQTQNSCIQENRNTETGFHVEITVDTYSDYKAERILPDIEDIEDIQPITINDEDKTTDQTECREIPESAVQILDANMSKEDNSRKDGGRDDERDNIQTDEMEKINGKDKVNSESSISEPAIEIDSQESNCPNVEHLENCVELTNEDRNCQQVCESIEKVAIYNEEKDVEEEYMNEDHVASEPEESEASDIDDEMEQVMEQKVEFYQYKCSQSLPCSPVMTKKVHRTFSRASLRSEYGSRESICLFPMVGFEATTLQDYIRDTKDNYSDEDMELEEPQCHILRLQMEAGKPISPVSPHSFSHMDSEASCSESEDSMHEKDPINYTQLNRDKIIQDEKFNIIENSHEQITDFRTQHRSVLTEYLSPFPTISHSRQEQPVIMHESYPLSNSETSHNLLNISESMDPTTSSDSKSYMSSKPILQKPTAELLNINEDAHTGPLNVCEFDALQTLVPSTFISESSQKAVSGTSQQSLDNSETGAGNDEEVKSVNMRTDETMPPRGELSEQESNGCTEQSTWQLYMGQESSRMSTSYDLMARESWEESEGSDNEMGGPLLDSRSLATHFTSSLFLDRDRKTPTRRVFKCSHCTEVFDCPKERRVHSTTVHKEAGPSSSQDNMDQQELKDIKLLDGRANVFEEIFVPGGLHIQQTYHHQQPLLHQLQPPQHMNSVKADGDMKTDGLLAVVDAVCTLCNQRFTSEKSLQIHHRRMHVTETMKRVRENAKCQICNEEFTSVASFNTHLKVHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTICDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDLKPKACSYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPYKCTQCSSAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDICSKTFHRSYYLKEHLRVHSGIRPYTCHICNKTSSTKSNHNKHVRIHHAREPVNTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01488885;
90% Identity
-
80% Identity
-