Tdro028304.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- ZFX
- Assembly
- GCA_030407085.1
- Location
- CM059583.1:54448119-54458845[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 6.6e+02 3.4 0.1 3 23 17 37 16 37 0.94 2 15 3.2 1.3e+03 2.5 2.3 1 23 835 858 835 858 0.80 3 15 0.00029 0.12 15.2 2.4 2 23 940 962 939 962 0.96 4 15 0.00049 0.2 14.4 0.1 2 23 975 996 975 996 0.98 5 15 1.7e-05 0.0071 19.0 2.3 2 23 999 1020 998 1020 0.97 6 15 0.012 5 10.1 0.3 1 23 1026 1048 1026 1048 0.95 7 15 2.4e-05 0.0099 18.6 4.5 2 23 1055 1076 1054 1077 0.95 8 15 0.14 58 6.7 3.5 5 23 1090 1108 1089 1108 0.97 9 15 2.4e-05 0.0099 18.6 1.4 3 23 1115 1136 1114 1136 0.97 10 15 0.0098 4.1 10.4 0.3 2 23 1152 1172 1151 1172 0.97 11 15 3.5e-05 0.015 18.1 0.7 1 20 1178 1197 1178 1200 0.92 12 15 0.00038 0.16 14.8 2.8 1 23 1208 1230 1208 1230 0.99 13 15 0.0023 0.93 12.4 3.2 1 23 1236 1258 1236 1258 0.97 14 15 4.1e-06 0.0017 21.0 3.9 1 23 1264 1286 1264 1286 0.99 15 15 0.00029 0.12 15.2 7.2 1 23 1292 1314 1292 1315 0.96
Sequence Information
- Coding Sequence
- ATGGATCTGGGTGCCCCAGGAAGCGCCCCGGCGCCGGGAGCCGTCGCCTGTCCGGTCTGCACGCTCTACCTGCGAGAGGGCATCAGCCTGCAGAAGCATTTGGACACGCATCCCAAGGAACAGGTGATCGAGGCGTTGATCAAGGCCAGCAGCGGTGTTTCTTCGATTGCTCAGCCCGCTCATGGCCATCAAACGACGACGGGGCCGACCCCGCCGCCGCCTGCTCCTCAGGTGCCCGCACCTTCGCCGTATCCGATAGGGCCCGTGTTCGAGTGCCCACCGATCAATGCTATGATGCCACCACAATTCGCTTCGTTCAGTTATCAACAATTCGTAAACAATGGAACAATGATGATACCCACGCAGTACGCGATGGCCAGTCCCCAGCCGCCCCAGGCCAGTCAGATGATGCAGATGCTGTACAATCCCTACGGTATGTATCATCAGCAACAGATACCTACCGTTCAAATGATCTCGCCGATAGCAGCCATGCAGGCGTCGACAACCGCTCAAGCTGCCATTCCAGCACCCAGGTTGAGAACACCCGTAAGTACGCCGATACCTATGCCGGAACCCCGGACGCTACCTGGAGTGCCTGTTGCCGAACCTGCAAAACAGGTTTTGCCACAGATGTTACCAAAACCCGAGAGAGTATTGCCGGATATTGAAATGCCATTGTCGCCCGAATCTCCGGCACCCGAGTTGATAGAAGAACAAGATCCGGTAGAAGACAGGATTCAAGTAGAACATAGGGAACAGCAGACGCAAAATAGTTGCGTACAAGAGGAAAGTACTACCGTGCCAAAGTTTCATATGGAAATAAATGCGTGTACGGACGACAATGCCGAAAGAATTTTACCGGATATCGAAGATACGGAAGATCCGCGAATGGTTACGGTTTCGGAAATTGACAAGACCCTCGACGACGGTAAACATCTGGAAACCGCTCTGGAAGTTCCAGATGAGCCGATAACCGAAGAAGAAAATCTAGACAAAAATGAGTGCAATGAAAACCTAGAACAAATTCGAGCTAGCGATACGCAAacgaaaaataacaatgcaGAATCCTCTTCGGAAATGACGGAAATACCGATTCACGAGCCTTTGATCGAAGAAGCTCACGCGTCTAATCGTCCGGATGTCGAACAACTCGAATGTTTACTAAGGACGATTATGGAGACTGATTTCAACAGTGTAGAGTTTACCAACAAAGATAGGAATTGCCAAGAAGTTTGCGAAACAATAGAAGATAAATCGtctcaaaatgaagaaaaagaagTGGAGGAAGAAGGCACAAACAAAGATCGTGTAAGCGAATCTGAGGCATCCGACATCGAGGAGGAAGAAGCAATAGTAAGTGAAACAAAAGCTGAACTGTATCGATACAAAAACAGCCGATCTGTACCGTGCTCTCCCATTATGTCAAAAAAGGTCCATCGAACCTTCTCACGCGCTTCGTTACGATCGGACTATGGGTCCACGGAAAGTATTTGTTTGTTTCCGATCGGTTTCGAAGCAACCACCCTGCAAGACTACTTGACCGAGGCGAAAGATAATTACAGCGACGAGGACATGGAGTTGGAAGAACCGCAAAGCAGCGTTCTGAGGCTTCGAACCGACGCGAGCAAAGGTGGATCTCCGCGTTCCCAGCTTTCGTATTCGCATATGGATTCGGATGGTAGTTGTAGCGAAAGCGAGGAATCTTTGCACGAAAAAGATCCGATTAGTAGCGCTCCAGTCATCCGAGAGCGAAAAGGCGAAGCTGAAAAGTTCGATAGTGTAGAAAATTCCCAGGAACAAGTTACAGATTTTCGGTCGCAACATCGCTCAGTTATTGCCGAATACGCAAGTCCGTTCCCAACGATCAATCAACATTCTCATCAAGATCATCCAGTCGCAATGCACGAAGCTTATCCTTTGTCGAATAGCGAAACGtctcataatttattaaacatttcggAATCCATGGATCCAATGACTAGCAGCGATTCCAAAAGCTATCTTTCTTCAAAACCAGTTTTACAGAAACCAACTACTGAactgttaaatattaatgaagatGCACATACAGATCcattaaatgtttttgaatttgaCGGTTTACAAATTTTGGTACCGAGTACTTTCATCAGTGAATCGTCGCAAAAAGCAGTAAGTGGAACGAGTCAACAGTCGTTAGATAACAGTGAAACTGGAGCTGGGAATGACGAAGAAGTAAAGAGCGTAAACATGCGAACAGATGAAACCATGCCACCCCGGGGCGAACTTTCCGAGCAGGAAAGCAACGGATGCACCGAACAATCTGCATGGCAGCTGTATATGGGACAGGAATCTTCTCGTATGTCTACATCTTACGACTTAATGGCTCGTGAAAGTTGGGAAGAGTCGGAAGGCTCCGATAATGAAATGGGTGGACCCCTGTTGGATAGCCGATCGTTAGCTACGCATTTTACATCTAGTCTCTTCTTAGATCGGGATCGCAAAACTCCAACTCGCAGAGTGTTTAAGTGTTCTCAATGTACTGAAGTTTTTGATTGTCCAAAAGAGCGCCGTGTGCATAGCACAACAGTACATAAGGAGGCTGGTCCCAGTAGCAGTCGAGACAACATGGATCATCACGAATTGAAAGATATCAAACTTCTAGACGGTCGTGCCAatgtttttgaagaaatttttgtacCCGGTGGTTTACACATTCAACAAACATATCATCATCAACAACCACTCCTTCACCAGCTACAACCTCCGCAACACATTAGTTCAGCAAAAGCTGACGGTGATATGAAAGCCGACGGTCTTTCCGCAGTTGTTGATGTTGTGTGTACTCTTTGCAATCAACGTTTTACGAGTGAGAAATCGTTGCAGATTCATCATCGGCGAATGCACGTAACCGAAACAATGAAACGTGTTCGGGAAAATGCAAAGTGTCAAATTTGTAACGAAGAATTTTCTTCTGTAGCAGCATTCAATGCTCATTTAAAAATCCACCCTCTTGAATGTGGACAGTGCGGCAAATACTTTTACCGTAAACAGAACTTCAAATTGCATATGAAGAGACACCTGGGTATCAAACCATTCCCTTGTACAGTTTGTGACAAGGCTTTCCTTACGAAACAGAAGTTAGACGAACACACCAACGGGCATACTGGTAACGCACCAGTTAAGTGCAATTTATGCAATGAAACCTTCCGTCGTTATTCGAATCTCACTCAACATAAAAATCGTCaccatttaaacattaaaaagaagCTGAAGGATTTCATTTGTCATTGTGGGGAGGTATTTCATTCAAAGAAGAAGTTAGCATGGCATAAGGAGACGCACGATCCGAAGCCAAAGGCATGTTCTTATTGCAATGAGAGATTTATCCATATGGCCAGCTTGACGAGACATATGCGTCGTGCTCACAATCGTCGGTTCGTGCCAGACGCTCAACGAGAGAGCGAAAATGTTGAATGTCCGATTTGCAAGTGCATCTATCTACGTTCGTCGTTGGCAGTGCACATGCGCGTACACAACGGCGAAAGACCATACGAATGTCAGATATGTTCGAAAGCTTTTAGTACTAAGTGGAATCTGCAACTTCACAAATGGACACACGCAGCCCGCAGCACCAAGCCGTACAAGTGTACCCAGTGTAGTTCGGCTTTTTACAGACACAGCGACTACATAGCGCACATGAATTCCCACCGCAACGTGCGTCCTTACACATGTAACTACTGTGGAGCCCAGTTTATTAGAAAGTACAATTGCTTACGACACGTAAAGGAGCACGAAGAAAATAAGGCTTACACTTGCGACGTTTGCAACAAAACTTTCCACAGATCGTACTATCTGAAGGAGCACCTCAGGGTACATTCGGGTGCTCGGCCTTACACGTGTCACATTTGCGGCAAGTCCAGTAGCACGAAATCGAACCACAATAAACACGTTAGGATCCATCATGCGCGCGAGCCTGTAAATACGGAGAACTAA
- Protein Sequence
- MDLGAPGSAPAPGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIKASSGVSSIAQPAHGHQTTTGPTPPPPAPQVPAPSPYPIGPVFECPPINAMMPPQFASFSYQQFVNNGTMMIPTQYAMASPQPPQASQMMQMLYNPYGMYHQQQIPTVQMISPIAAMQASTTAQAAIPAPRLRTPVSTPIPMPEPRTLPGVPVAEPAKQVLPQMLPKPERVLPDIEMPLSPESPAPELIEEQDPVEDRIQVEHREQQTQNSCVQEESTTVPKFHMEINACTDDNAERILPDIEDTEDPRMVTVSEIDKTLDDGKHLETALEVPDEPITEEENLDKNECNENLEQIRASDTQTKNNNAESSSEMTEIPIHEPLIEEAHASNRPDVEQLECLLRTIMETDFNSVEFTNKDRNCQEVCETIEDKSSQNEEKEVEEEGTNKDRVSESEASDIEEEEAIVSETKAELYRYKNSRSVPCSPIMSKKVHRTFSRASLRSDYGSTESICLFPIGFEATTLQDYLTEAKDNYSDEDMELEEPQSSVLRLRTDASKGGSPRSQLSYSHMDSDGSCSESEESLHEKDPISSAPVIRERKGEAEKFDSVENSQEQVTDFRSQHRSVIAEYASPFPTINQHSHQDHPVAMHEAYPLSNSETSHNLLNISESMDPMTSSDSKSYLSSKPVLQKPTTELLNINEDAHTDPLNVFEFDGLQILVPSTFISESSQKAVSGTSQQSLDNSETGAGNDEEVKSVNMRTDETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLMARESWEESEGSDNEMGGPLLDSRSLATHFTSSLFLDRDRKTPTRRVFKCSQCTEVFDCPKERRVHSTTVHKEAGPSSSRDNMDHHELKDIKLLDGRANVFEEIFVPGGLHIQQTYHHQQPLLHQLQPPQHISSAKADGDMKADGLSAVVDVVCTLCNQRFTSEKSLQIHHRRMHVTETMKRVRENAKCQICNEEFSSVAAFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDFICHCGEVFHSKKKLAWHKETHDPKPKACSYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQICSKAFSTKWNLQLHKWTHAARSTKPYKCTQCSSAFYRHSDYIAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01489607;
- 90% Identity
- -
- 80% Identity
- -