Basic Information

Insect: Trichopria nigra
Gene Symbol: -
Assembly: GCA_030522945.1
Location: JAPYZR010001705.1:16690-21355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-05 0.006 18.5 0.7 1 23 148 170 148 170 0.95

2 15 0.0015 0.32 13.0 1.0 3 23 178 198 177 198 0.99

3 15 9e-05 0.019 16.9 0.0 1 23 323 345 323 345 0.98

4 15 0.03 6.4 8.9 0.1 1 23 351 374 351 374 0.97

5 15 0.0002 0.042 15.8 1.9 1 23 401 423 401 423 0.97

6 15 1.9 4.1e+02 3.3 0.0 1 23 439 461 439 461 0.86

7 15 0.66 1.4e+02 4.7 0.3 2 23 469 491 469 491 0.94

8 15 0.1 22 7.2 1.8 5 19 502 516 499 520 0.90

9 15 0.00022 0.046 15.7 3.5 3 23 528 548 526 548 0.97

10 15 0.0095 2 10.5 0.1 2 23 554 575 553 575 0.96

11 15 2.2e-06 0.00045 22.0 0.3 1 23 584 606 584 606 0.98

12 15 0.0039 0.83 11.7 0.2 3 23 614 634 612 634 0.97

13 15 0.0035 0.74 11.9 0.2 3 23 642 662 640 663 0.94

14 15 0.52 1.1e+02 5.1 0.0 1 23 677 699 677 699 0.93

15 15 0.0028 0.58 12.2 0.0 1 20 1102 1121 1102 1124 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-05	0.006	18.5	0.7	1	23	148	170	148	170	0.95
2	15	0.0015	0.32	13.0	1.0	3	23	178	198	177	198	0.99
3	15	9e-05	0.019	16.9	0.0	1	23	323	345	323	345	0.98
4	15	0.03	6.4	8.9	0.1	1	23	351	374	351	374	0.97
5	15	0.0002	0.042	15.8	1.9	1	23	401	423	401	423	0.97
6	15	1.9	4.1e+02	3.3	0.0	1	23	439	461	439	461	0.86
7	15	0.66	1.4e+02	4.7	0.3	2	23	469	491	469	491	0.94
8	15	0.1	22	7.2	1.8	5	19	502	516	499	520	0.90
9	15	0.00022	0.046	15.7	3.5	3	23	528	548	526	548	0.97
10	15	0.0095	2	10.5	0.1	2	23	554	575	553	575	0.96
11	15	2.2e-06	0.00045	22.0	0.3	1	23	584	606	584	606	0.98
12	15	0.0039	0.83	11.7	0.2	3	23	614	634	612	634	0.97
13	15	0.0035	0.74	11.9	0.2	3	23	642	662	640	663	0.94
14	15	0.52	1.1e+02	5.1	0.0	1	23	677	699	677	699	0.93
15	15	0.0028	0.58	12.2	0.0	1	20	1102	1121	1102	1124	0.94

Sequence Information

Coding Sequence: ATGGATGTTGGTGGAGACTTGACCCTCCAGTGGGTGGAGGATGTAGGAAACGTTATTCATGAAGAGGTAATATGTGGTCTAGAAGCAGACCTCAATGCCCCTACAGAAGAAGTGGTCGGTGCGTGCGAAGAAGTGACAGTTGAGGAAACTGTCGAATCTGTAGTCGAAGATTCTTCCGCTATGGGAGATTCAGAGATACTAATGGTTCCGCAATCTACAAGTGATATGGAATCGATATACATTGTTCCCCAAGATCAGAGTCATGATTACTTGAATATTCAAGTAACTGAAGAAGTCATCACGGATACCTGGGACCGAGATGGACCAGATGATggCGTACAAGTACCAGAAACTAAAGTGTCGCATGACAATCTATTGGAATACGATGACATGGAAATTCCATTACCAATTGATCAAGATTCCTATACAAACACGAGACCTTATCCATGCGACTTTTGTAGCAGAAGATTTAGGAAGAAAGCTAATTTGATGAATCACATGGTAGCCCATCAGACAGATCGTCCACATGGTTGCAACTTGTGTGGAGCTAGATACGTAAGGAAATGTGATCTCTTGAACCACTTAAAAGTTCATGCTTATGCCCCTTCTCGAGATGGTTTGGAAGATGATCTGAATGATGAAGATCCATTGATACCCGATGAGGAGGAGACTGGAATGAAGGGCAGACGCAAAAAAGTACAGACCAATGTACCAAGGAAGCGTAAATATAATGTTGTCGGTGGTAAACGAAATAATAGCGAAGACATGTCAAAAATGGATGCCAACAAATTCGCTGGACGATCCTACAATTACGTCGATGAAGATATGCGATTGCTGGAAGAAATGTCTAATAAGAATTCAGGTCACGGAAGTAATTTCGCTTCAAGCTCAAGATGGACTGCAATATCTCCAGAGTCTATGGAGCAGCAGCCACCACGTTGGCCAATCACCGATCCTACAAAGCCATATGTATGTCAATACTGCGGTGTAGGATTTGCAAGAGAGAAAGCTCTTGCATCCCATGCTCGGATTCACGGCGGTGACAGTCCATTTGAGTGCACAAATTGCGGAGACATGTTTTGGGACGTCGATACCCTGCAAGAGCATATCCGAGTGAAGCATGGAGGTGCTCCTGTGCCACAGTCAGACGCTGAAGAATTTGATGATGCCACGTACACTGGTGATGAAAGGTTCGGTGAATTCTTCTGCGACACTTGTGGAGTACCATTCCATCGATTGGATTTGTTAAAACGTCATAGAAAGGTGCATATCAAACAGGAAGTTGACACTATTGAAGGAGGATCCAGTCAACATCACGTATGTAATGTCTGCGGGGAGTGGTTCGAAGAAGCTCTCGCCCTGTTGGCGCACGCTGAATTGCACGCCAGTAGATCTCCTAGTCGCCGATGTTTGCTGTGCGGCGAAAGATGTCGAGACGACGCCGAAGTAGCCGAACACGTTCGGGAAAATCACGCTCAGGATGCACCTCCAAATACGTGCATTTTATGTGGCAAAACGTGCAAAGACAAGAGAAGTTTATTAAAACATTCTTGGGTTCACAATACTGACAAAACGTTTGGATGCACCAAGTGTGGTAAACGTTTCCACAGCAAAGCACGGTTACGAAGacaCATGGTTTCACACCGTAACAAAATGGTGTCCTGCGACGAGTGTGGCGAAGAATTTCCGGACGGTAGGGCATTGGTCAGTCACCGTCATTCGCATAATAAAGAAACCGGCGGACGGTCTTTCCCGTGTAAAGAATGCGGAAAGTCCTTCGGCAGCCGCAGCTCCCAACAGATACACATTCGTATCCATACGGGAGAGCGGCCGTATGGATGTCGATTTTGCTGGAAGGCTTTCGCCGACGGTGGAACTCTTAGAAAACACGAGCGCATTCACACCGGCGAAAAACCTTATGGCTGTGCCATTTGTCCGCGTGCTTTTAATCAAAGGgTTGTTCTTCGGGAGCACGTAAGAGCACACCACTCGGGTCCGGATCCAAAATGTCACGGAAGCATAACGCCGTACCTTTGCAAGGTTTGCGGTGACACCTACGGAACGTCCGAGGAGATAGTAGCGCACATAGTGCAGCACTGCGACGACAATACGGCAATGCGACGTCAGCCGCAGACGGGTCCAAGGAAGTACAAAAGACGGCGCAAGCTGAAACCTACGGAGAGTGCAATGGTGTCGCGGATAAACGAACAGTTTAACATCGTCGACGGTATTTCCGATTCGGACGACAATACGAAGCCGCGGAAACTGGGGAAGAAAAGCAAACAACAGCACCGCGCAAACGTCGAGGAAGGCTATCAAAACGTTCTAAAGAGCTTCGAAACCTCATTGCAGAACATAAATTCTATCGTCAGCAATTCGAAGCTGAATCCTGCAAAGACGAAGCTCACCAAGAAGAAAGTGAAGAAGGACGAGAAGAAGAGCGCCGAGCCGCCGGCCACGAGTCAACCGAGCAGGCCGAAGATGATTCACACGCAAAAGACCCGGGTGCCAGTAGACATTGGAACCGACGGCGTGAAGAAGGGTCAGAAGACGAAGACGATGGTAACGAAGACGCCGAAGGTCATGCCCAGCGAGCACAAGCAGGGAATATTCCCGGGTGGCGAGAGGAACAGGCCGCGTACCAAAAACGTCAGTTACCACATAGAAGGCAAAATGCAAATGACACCCGCAGTGTTTCCTAAGTCGAAAGAAACGGACATTCAAAATAACTTTATCGAAGTCGAGAGCGTCAACATTAAGATGGAGCCAGGAATGCGGAATCAGTTGATGCAATCCCCGCTGGAGAGTAATCACACTAACAATAATGGGAACATCATGGGATTGAAAAGCGACAAATTAGAGCGCATACCGAAGAAGAGAACGACGCCAGTGAGAAAGCTCAAGAAGCCGAAGGCGATTCAGGTGAAGCAAGAACCTACCGAGATTCTGCCCCATCAGGAGCCCGAGCCGGAGCACATATCGTTGCCAGAACCGATGGCGGTGAGCGAGATGTCGAACAGCGCTTCCGAAGAGGTTCAGCCGACAAGATTATTTGAGACATTCGTCGACGGGGGCAACCTGGAAGTAGCTTTTGAGGCGAACATCGAGACAGGGCCGGAGATCGAAGAGGAAGAATCCATTCTGCCCGACATAGTCAAGGTGAACCATATGGAGGACATGCCTAAGGGCAATGTGAAACTCAGCGTCAAGGTCGAATCGACGCCGGAAAGGCTGTTGGATGTTCATAGTTTAATCGGATCGGTGGAAGAAGTACCAGAGACCATTATACCCGATGCCGTCGAATACACTTGCGAGATGTGCTCGGCGGTATTCTCCAGTCGAGCCGAACTCCTTGTACACGTTCCGATACACATTTGA
Protein Sequence: MDVGGDLTLQWVEDVGNVIHEEVICGLEADLNAPTEEVVGACEEVTVEETVESVVEDSSAMGDSEILMVPQSTSDMESIYIVPQDQSHDYLNIQVTEEVITDTWDRDGPDDGVQVPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLLNHLKVHAYAPSRDGLEDDLNDEDPLIPDEEETGMKGRRKKVQTNVPRKRKYNVVGGKRNNSEDMSKMDANKFAGRSYNYVDEDMRLLEEMSNKNSGHGSNFASSSRWTAISPESMEQQPPRWPITDPTKPYVCQYCGVGFAREKALASHARIHGGDSPFECTNCGDMFWDVDTLQEHIRVKHGGAPVPQSDAEEFDDATYTGDERFGEFFCDTCGVPFHRLDLLKRHRKVHIKQEVDTIEGGSSQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGERCRDDAEVAEHVRENHAQDAPPNTCILCGKTCKDKRSLLKHSWVHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVSCDECGEEFPDGRALVSHRHSHNKETGGRSFPCKECGKSFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHGSITPYLCKVCGDTYGTSEEIVAHIVQHCDDNTAMRRQPQTGPRKYKRRRKLKPTESAMVSRINEQFNIVDGISDSDDNTKPRKLGKKSKQQHRANVEEGYQNVLKSFETSLQNINSIVSNSKLNPAKTKLTKKKVKKDEKKSAEPPATSQPSRPKMIHTQKTRVPVDIGTDGVKKGQKTKTMVTKTPKVMPSEHKQGIFPGGERNRPRTKNVSYHIEGKMQMTPAVFPKSKETDIQNNFIEVESVNIKMEPGMRNQLMQSPLESNHTNNNGNIMGLKSDKLERIPKKRTTPVRKLKKPKAIQVKQEPTEILPHQEPEPEHISLPEPMAVSEMSNSASEEVQPTRLFETFVDGGNLEVAFEANIETGPEIEEEESILPDIVKVNHMEDMPKGNVKLSVKVESTPERLLDVHSLIGSVEEVPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01488879;
90% Identity: -
80% Identity: -