Basic Information

Insect: Trichopria drosophilae
Gene Symbol: -
Assembly: GCA_030407085.1
Location: CM059585.1:4034344-4045302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6e-05 0.011 18.5 0.7 1 23 147 169 147 169 0.95

2 15 0.00095 0.39 13.5 1.1 3 23 177 197 176 197 0.99

3 15 8.2e-05 0.034 16.9 0.0 1 23 321 343 321 343 0.98

4 15 0.02 8.2 9.4 0.1 1 23 349 372 349 372 0.97

5 15 0.00018 0.076 15.8 1.9 1 23 400 422 400 422 0.97

6 15 1.8 7.3e+02 3.3 0.0 1 23 438 460 438 460 0.86

7 15 0.6 2.5e+02 4.7 0.3 2 23 468 490 468 490 0.94

8 15 0.095 39 7.3 1.8 5 19 501 515 498 519 0.90

9 15 0.0002 0.082 15.7 3.5 3 23 527 547 525 547 0.97

10 15 0.0086 3.6 10.5 0.1 2 23 553 574 552 574 0.96

11 15 2e-06 0.00081 22.0 0.3 1 23 583 605 583 605 0.98

12 15 0.0036 1.5 11.7 0.2 3 23 613 633 611 633 0.97

13 15 0.0032 1.3 11.9 0.2 3 23 641 661 639 662 0.94

14 15 0.22 90 6.1 0.0 1 23 676 698 676 698 0.93

15 15 0.0025 1 12.2 0.0 1 20 1094 1113 1094 1116 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6e-05	0.011	18.5	0.7	1	23	147	169	147	169	0.95
2	15	0.00095	0.39	13.5	1.1	3	23	177	197	176	197	0.99
3	15	8.2e-05	0.034	16.9	0.0	1	23	321	343	321	343	0.98
4	15	0.02	8.2	9.4	0.1	1	23	349	372	349	372	0.97
5	15	0.00018	0.076	15.8	1.9	1	23	400	422	400	422	0.97
6	15	1.8	7.3e+02	3.3	0.0	1	23	438	460	438	460	0.86
7	15	0.6	2.5e+02	4.7	0.3	2	23	468	490	468	490	0.94
8	15	0.095	39	7.3	1.8	5	19	501	515	498	519	0.90
9	15	0.0002	0.082	15.7	3.5	3	23	527	547	525	547	0.97
10	15	0.0086	3.6	10.5	0.1	2	23	553	574	552	574	0.96
11	15	2e-06	0.00081	22.0	0.3	1	23	583	605	583	605	0.98
12	15	0.0036	1.5	11.7	0.2	3	23	613	633	611	633	0.97
13	15	0.0032	1.3	11.9	0.2	3	23	641	661	639	662	0.94
14	15	0.22	90	6.1	0.0	1	23	676	698	676	698	0.93
15	15	0.0025	1	12.2	0.0	1	20	1094	1113	1094	1116	0.94

Sequence Information

Coding Sequence: ATGGATGTTGGAGGGGATTTATCCCTCCAGTGGGTGGAGGAAGTTGGCAACGTAATTCACGAAGAAGTAATATGCGGTTTAGAAGCAGATCTCAATGCTCCTACCGAAGAAGTTGTCGGCGCCTGCGAAGAAGTGGCAGTGGAAGAAACTGTCGGTTCTCCCGTTGAAGATTCGTCGACCATGCCCGATCCAGAAATTCTTATGGTTCCGCAGCCCAGTGACATGGAATCGATATATATCGTTCCCCAAGACCAAGGTCACGATTACTTAAATATCCAAGTAACGGAAGAAGTAATCACCGATAGCTGGGACAGAGGTGGACCGGACGACGGTGTACAAGTCCCGGAAACTAAAGTGTCGCACGACAATTTACTGGAATACGACGACATGGAGATTCCGTTACCAATCGATCAGGATTCTTACACAAATACAAGGCCGTACCCCTGCGATTTCTGTAGTAGACGATTCAGGAAGAAAGCCAACTTAATGAACCACATGGTTGCGCATCAGACGGATCGGCCTCACGGTTGCAATTTGTGCGGAGCCCGATACGTTCGAAAGTGCGATCTCATgaaccatttaaaaatacacgCTTATGCCCCGTCTCGTGACGGATTGGAGGACGATCTCAACGAAGAAGATCCGCTGATCCCGGACGAGGAAGATCCCGGAATAAAAGGACGTCGCAAGAAAGTCCAAACCAACGTACCGAGGAAGCGCAAAAACAACATTATGATTGGTAAACGAAACAACGAAGACTCGTTGAAGTTGGACGCCAACAAATTTGCGGGCAGGTCTTACAATTATGTGGACGAAGATATGCGACTGCTCGAGGAAATGACTAACAAAAATACCGCTCATTCGAGCCAGTTCGCTTCGAGCTCGAGATGGACCGAAATGTCTCCGGGAAGTATGGAGCAGCAGCCGCCGCGCTGGCCAATCACCGATCCTACCAAACCGTACGTGTGCCAGTACTGCGGCGTTGGATTCGCTCGAGAGAAAGCTTTGGCGTCTCATGCGCGTATTCACGGCGGGGACAGTCCGTTCGAGTGCACAAATTGCGGCGACATGTTCTGGGATGTCGACTCCCTGCAGGAACACATCCGTGTCAAACACGGCGGTGCTCCGGTAGCCCAATCCGACATTGAGGAATTCGACAACGACGCCACGTACACCGGAGACGAGAGGTTCGGAGAGTTCTTCTGTGATACCTGCGGAGTTCCGTTCCATCGATTGGATTTGTTGAAACGTCACAGAAAGGTTCATATCAAACAAGAGGTCGAAACGACCGAAGGTGGCTCGAATCAACATCACGTATGTAACGTCTGCGGAGAGTGGTTCGAAGAAGCTCTGGCACTTTTAGCGCACGCTGAACTCCACGCTAGTAGGTCCCCTAGTCGACGGTGTTTACTCTGCGGAGAAAGGTGTCGCGACGACGCCGAAGTCGCCGAACACGTCCGGGAGAATCACGCCCAGGATGCGCCGCCAAATACCTGCATTTTATGCGGTAAAACCTGCAAAGACAAACGAAGTTTACTGAAACACTCGTGGGTCCATAACACTGACAAGACGTTCGGATGCACCAAGTGCGGAAAGCGTTTCCACAGTAAAGCACGATTACGAAgGCATATGGTATCGCACCGCAACAAAATGGTGTCCTGCGACGAATGCGGAGAAGAATTTCCCGACGGCAGAGCACTGGTCAGCCATCGTCATTCGCATAATAAAGAAACCGGAGGTCGTTCGTTCCCTTGCAAAGAGTGCGGCAAATCCTTCGGCAGTCGAAGTTCGCAGCAGATACACATTCGTATCCACACCGGGGAACGACCGTACGGCTGTCGGTTTTGTTGGAAGGCATTCGCCGACGGCGGAACATTGAGGAAGCACGAACGCATTCACACCGGCGAGAAACCTTACGGCTGCGCCATTTGCCCACGGGCGTTCAACCAAAGGGTGGTTCTGCGAGAGCACGTAAGGGCACACCATTCGGGACCAGATCCGAAATGTCACGGCAGTATGACGCCGTACCTGTGTAAAGTCTGCGGAGATACCTACGCATCGTCGGAGGAGATTGTCGCACACATAGTGCAGCACTGCGACGATAATACTGCAATGCGTCGCCAACCACAGACGGGTCCAAGAAAATACAAGAGACGGCGTAAACTCAAGCCTACAGAAAGTGCAATGGTGTCAAGGATGACAGAGTCCTTCGACCTGCTCGACGGACTGTCAGATTCTGACGACAATACCAAACCGAGAAAGTTAGGCAAGAAGAGTAAGCAGCAGCATCGTGCCAATGTCGAAGAAGGTTATCAGAATGTCCTGAAAAGCTTCGAGAGTTCTCTGCAAAACATTAATTCTATCGTCAGCAATTCGAAGATGAATCCTGCCAAGACGAAGCTTACGAAGAAGAAAGTCAAGAAGGAAGAGAAAAAGATTGTCGAAGCACCAGCCTCGAATCAACCGGGCAGGCCAAAGATGATACACACGCAGAAAACCAGAGTTCCGGTCGATATTGGAACGGACGGAGTGAAAAAGGGCCAGAAAACCAAGACGATGGTGACAAAAACACCAAAAGTCATACCTAACGAACACAAACAAGGGATTTTCGTCGGCGGAGAAAGGAACCGGCCCCGAACGAAAAACGTCAGTTATCACATAGAAGGCAGGTTGCAGATAACCCCTGCGATGTTCCCAAAATCAAAAGACGAAGAAATCGCCAACAACACGATCGAAGTCGAAAACATCAATATCAAACTCGAGCCCGAAATAAGGAACTTGATGCAGGCGCCGGAAAAACACACCAACAATAACGGTAACATTCTCGACACAGACTCGGAGAAACCTGAACGTACCGCCAAGAAGAAAACGACACCGATGAGAAAATTCAAGAAACCGAAGCCGGTGATGGTGAAACAGGAACCTGCAGAGATTCTGCCTCCGCAGCCCGAACCGGAGCTTGTAACCGAACCGGCGACAGTGACCGAAATCAGTGACAGCAATTCGGAAGAAGTTCAACCGACTCGACTGTTCGAGACTCTGGTTGACGGTAGTAACATGGAAGTGGCTTTCGAAGCGAACATCGAATCCGGACCCGACATAGTGGAAGAGTCCATTCTACCCGATCTGGACAAAGTGAACCACGCTGAAAGCGTACCGCAGGGAAATGTTCAGCTCAGCGTGAAAGTGGAGTCGACACCGGAAAGGCTGTTGGACGTTCATAGTTTAATCGGTTCGGTGGAAGAAGTGCCAGAGACCATTATACCGGACGCCGTCGAATACACCTGCGAGATGTGTTCGGCGGTGTTCTCAAGTCGCGCGGAGCTACTGGTTCATGTGCCGATACACATTTGA
Protein Sequence: MDVGGDLSLQWVEEVGNVIHEEVICGLEADLNAPTEEVVGACEEVAVEETVGSPVEDSSTMPDPEILMVPQPSDMESIYIVPQDQGHDYLNIQVTEEVITDSWDRGGPDDGVQVPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPSRDGLEDDLNEEDPLIPDEEDPGIKGRRKKVQTNVPRKRKNNIMIGKRNNEDSLKLDANKFAGRSYNYVDEDMRLLEEMTNKNTAHSSQFASSSRWTEMSPGSMEQQPPRWPITDPTKPYVCQYCGVGFAREKALASHARIHGGDSPFECTNCGDMFWDVDSLQEHIRVKHGGAPVAQSDIEEFDNDATYTGDERFGEFFCDTCGVPFHRLDLLKRHRKVHIKQEVETTEGGSNQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGERCRDDAEVAEHVRENHAQDAPPNTCILCGKTCKDKRSLLKHSWVHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVSCDECGEEFPDGRALVSHRHSHNKETGGRSFPCKECGKSFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHGSMTPYLCKVCGDTYASSEEIVAHIVQHCDDNTAMRRQPQTGPRKYKRRRKLKPTESAMVSRMTESFDLLDGLSDSDDNTKPRKLGKKSKQQHRANVEEGYQNVLKSFESSLQNINSIVSNSKMNPAKTKLTKKKVKKEEKKIVEAPASNQPGRPKMIHTQKTRVPVDIGTDGVKKGQKTKTMVTKTPKVIPNEHKQGIFVGGERNRPRTKNVSYHIEGRLQITPAMFPKSKDEEIANNTIEVENINIKLEPEIRNLMQAPEKHTNNNGNILDTDSEKPERTAKKKTTPMRKFKKPKPVMVKQEPAEILPPQPEPELVTEPATVTEISDSNSEEVQPTRLFETLVDGSNMEVAFEANIESGPDIVEESILPDLDKVNHAESVPQGNVQLSVKVESTPERLLDVHSLIGSVEEVPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01489593;
90% Identity: -
80% Identity: -