Tnig004551.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- BPM3
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010001573.1:30605-31825[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8 1.1e+03 1.3 0.0 49 97 14 60 3 65 0.81 2 4 1.3e-24 8.1e-22 79.0 0.6 2 108 178 283 177 285 0.94 3 4 0.085 51 5.6 0.0 80 109 287 316 280 317 0.87 4 4 0.73 4.4e+02 2.6 0.0 80 109 336 365 328 366 0.86
Sequence Information
- Coding Sequence
- ATGTCAAACACCATTCTTGAGGTCGCCAAGACTATGACTAGCACTGTCGTCATCGACATTTCTGACGTAGTGTCTAAAGCTATACGACCAATGGAGTATAATTACCCTTTGCATAATTACCCTTCgtctaaagaaattaataacattttgtacAACACAGATCCATTTAGATTGAATACTGTGCCCGATGTAAAATATATCTTACAGTACACTTTTAAGTATATGGACAGACCTGGTGAGGCATTCTTAAAAGTTGAAGGTGCAGCAGATTGCCAGAAGAATTATGGTCATCAAGTAGTAggcagtatattgaattatccGAATCATGGACATTTTTCAGCTCGCGGAATCATACCAGATACCAATAAATTTCGACTGGATTCTTTTTTCTCCTTGCAGACATTAAAAGGTGCAATGTATAAGGGTTCCATCAAATTatgcattaatattttaatatttccagTACAAGTGACTTGCGCCGCGGAACACAATAGCTTGATGATAGGTAGACCAGGTTACTTTATTCAACTTGGAAATATGCTGAAACACGAATTACACACAGATGTGACGATTAAAGTTAAAGATCAAACTTTTAAAGCACATAAGGCTATGTTAGCGACTCGATGTGACTATTTCGCGAAAATGTTCGACGTAGATATGGTGGAAAACCGAACAAATGAAATTCTAATAACCGACGATTATTCCCCGCAAGCTATAAGAGAATTATTGAGCTACATTTATGTGGATGACGTGCCTAACTTGCCCAAAAATGCACACCAATTATTTAGAATAGCTCACGCTTATGGGCTTGATGATCTTCGGTTCAAGTGTGAGAACTATATAGAAAGTCACGTCGTTACGTTGAATATTGTAGATATTCTTACATTGGCAGATGTTTACGATTCAAAGCCCTTGCAAACAGCATCGTGTAATTTTGTCCAAAAAAATGAACCCTTTCTTGTAAAGAGTCcgaagtatataaattatttgattggGACAATGTCAGTTTCTAATGTATCTTCATTACTCGTTCTATCAAAGAAGTATAAAATAGAAACTTTGGAAGCGAAATCCCTCGAATATATTGTGCAAAATGTGAAGGCCATGATACATGAGCCTACATACAGAGAATTGTATCGAAGTGATCCCACGTTAATTGTACAGGTCGATGAATTCATAAtcaattcattcaatattaaaattgatgaatggttaaaatga
- Protein Sequence
- MSNTILEVAKTMTSTVVIDISDVVSKAIRPMEYNYPLHNYPSSKEINNILYNTDPFRLNTVPDVKYILQYTFKYMDRPGEAFLKVEGAADCQKNYGHQVVGSILNYPNHGHFSARGIIPDTNKFRLDSFFSLQTLKGAMYKGSIKLCINILIFPVQVTCAAEHNSLMIGRPGYFIQLGNMLKHELHTDVTIKVKDQTFKAHKAMLATRCDYFAKMFDVDMVENRTNEILITDDYSPQAIRELLSYIYVDDVPNLPKNAHQLFRIAHAYGLDDLRFKCENYIESHVVTLNIVDILTLADVYDSKPLQTASCNFVQKNEPFLVKSPKYINYLIGTMSVSNVSSLLVLSKKYKIETLEAKSLEYIVQNVKAMIHEPTYRELYRSDPTLIVQVDEFIINSFNIKIDEWLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -