Tni003796.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- Sall1
- Assembly
- GCA_003590095.1
- Location
- NC:18285694-18296051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 66 4.0 0.3 2 23 6 27 5 27 0.96 2 13 0.0043 0.22 11.8 0.7 1 23 997 1020 997 1020 0.92 3 13 1.1e-05 0.00057 19.9 1.8 2 23 1124 1145 1123 1145 0.97 4 13 0.00086 0.044 14.0 2.6 1 23 1151 1173 1151 1173 0.98 5 13 0.068 3.5 8.0 3.3 2 23 1180 1201 1179 1202 0.94 6 13 0.86 44 4.6 1.5 5 23 1215 1233 1214 1233 0.95 7 13 0.014 0.69 10.2 0.7 3 23 1240 1261 1239 1261 0.97 8 13 0.00081 0.041 14.1 0.4 2 23 1280 1300 1279 1300 0.98 9 13 0.002 0.1 12.9 1.1 3 20 1308 1325 1306 1328 0.86 10 13 0.00086 0.044 14.0 0.4 1 23 1336 1358 1336 1358 0.98 11 13 0.0047 0.24 11.7 7.2 1 23 1364 1386 1364 1386 0.98 12 13 5.5e-06 0.00028 20.9 1.3 1 23 1392 1416 1392 1416 0.98 13 13 0.00086 0.044 14.0 5.1 1 23 1422 1444 1422 1445 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTTGTGCAGTGTCCCGTGTGCACGCTGTTCCTGCACAATGGGATGAGCCTGGAGTCTCATTTGGACACACATCCTAAAGACCAGGTTATCAAGGCATTGTGTTCTTTGACATCAAGCAAAGGCTCTAATTATGGAAGCAGGACTTCCACACCTATGCATTCAGAGAGATCCTATAGGAGTAGGTCACGGACACCTGCTATTGATGATAGTGCCAAATGGAATGGAACCCGAGGTGCAGATCATGACAGGTTTTGGAGGAGAACACCAAGTAGATCAGCTAAAAATACTCCTCAGACTAACCCATCTAGAAATGCCACTCCAGATATTAGGATTATGGATGTTAACTTTGAAAACCATTCAGTTTCTGGTACTGGACCAGGACAGCATGCAGGCAATACATTTAGTatgaaaaatgataaacatCAAGACACCTTTCAGAATCCCCCAGTGCCAGACTTTGAACCGCAGTATGCTTACTATCCAGAACAACCGGAAGACAGAGAGATCAAGTTCTCTCGGAGTGCTGAATACAATGCTATGGATAGTAGTAATTTGTTTACTTACAATGTGCCAACTTTGGGAGGGACAGGTGTCAAGTTGGTACCAGCAGTGCCTAGAAGAGCAAATGACCTTGTCAAAGTTTTGCCCAAACCAAATAATATACTCCTCAAAAGTAATATGAGTGGTGTTCAATACTTGCCACCTGGGGTGAAGCCCATGCATGTTGTGTTGCCAACAGCACCAGCATTTGTACAGAAAGGATTACAGAACAACATGATTATGCCAAGTAATGTACAAAACACACAAGTGCAAATGAATACCAAATCAGCTACACCCCCTCTAGCTAGCAACCCACTTAACCAAATTACTTCTGGTGCTTTCACTCCAGCGTCAACAGTTGTTACCCAAAACTCCCAAATAATATACAGAGAAATGGTTCACAGCATAGACGGCAAACCTTTCATAACTTCCATGCCCACCATACTGGGTGGTGAGAATGTTACTAATTTAGCTCAAACTAGCTCCATGTATCAGAATGTTATGGTTGTAGACCAGTTTGGGAACACTTCATGTATGTACACTACACCTCAACAAGTCATGAATAAAACTTGTCCTACAAACATGTACAATGAGAGTGGACCTCCTGTACCTAGTATAAACATAGATAAATCTGTTGAAAACATAAATGAccctaaaacaataataattgaagtaGGCCCTCTTGTAGCTCCTTCTGAGAATGAAGAACCAATATGTACTGTAGCACCGCAGCAAACCTCTAGAAGTCCTGTGGACAAAACTGAGAAAACCTTGGAACCTGTAGACCCTAAATGTGATGCACCTGGATCTAGTAAAGGCTTAAAAATTTTAAGTAACATCAAGGTCGAAGTTCCAGTTCAGCATCACAAGAATATGGTGAACACTGTAATGGATCTCACTGGATCCAGTGATGCTGATTATGCTGTTGAAAGATCCGATACACCTGAGAAGATTCTACCAGATCTAGATGATAATAATCAATTGATGTCTGATGACACCCAGCCATCATCAATATCTAGTGTTGATAGCATGGTCTCCCATACCTTTTCTGTGATAAAGAATGTTGGCAACCCCAGCAAAACCTCAGGAGATAATAAAATGGACACAGACTTTTCAGACAGTTGTCCTGTTCCagatttaatttgtaatgaGAAACCTTCCATATCACCTTGTAGTGAATTATCAGAGAATTGCGACAATTCTACCGACCGTACCTCTATTTCTCCTAAACCCGAGAGTCGCGAAGTTAGCATAGAACTTCCTGAAAAGAAAATTCAGCTCTCTCAGAAGCCTGTAAGGCACAATACACTAAGActgaacaatatttatgtaaaaaagcaCAAGAAAGTTCTGCAAATTAAAAACGCTAAATCATTTCCCCTAAAAACTACTGCTAAAAGTGACACAGACATTACTCCCACGTCATCTGGTTGCAGATCACCAGAAAATTTTACTATGAATAAAATTCATCAAACTGATAGGATAGAAAATAAAGAGAAGCCAAATCTACTACAAACTATATCTGTAGAAGAGATCAAAGAACATGATGATAATAACGACTTTGATGCTGACACAGAGGAACAGTCCATGGATATAGAACCTGTAGCACCTACAAGCTTAGACCAACCGGAAGAGTATGTTGGAGGCATGGACTTGGTGCAGGTCAAAGAAGAAATTAACTCCAGTAATGAAGGAGGGTTCAGTAACGAGACGGTGACATCGGATCGGGAGCTCACTCCGCTAGAAACGTTACGACCTATCAATGTTATCACTTACGGTAATATACCTAACCAAGATTTCAATGAAGAATCTAACGACAGAGAATTGTTAGACCTCGAAGCTGCttccaaaaataaacagttcGTAAGTATGATGAACGAAAACTACTTCGGTGATAATATTTACGCAGATTATTTTACACCCGACCGTGTCGAGGCGTTCGACGCCGAACGCGAAGCGGCAGCATTTAAGGAAGGCCCCAAAGAAGGTATATATCTGTGGGGTGAGCCATCACAGAAAGAAAATGAGTTTGTTTTGCCCAACTTCATACATGAGAGTTACAAAATAGCTGAGAGTAATGGAATAGATTATTCAGAGTTGGGTGTTAGAGAGGTGCAGGTGGATGTGGAAGTGGATGGGTGTGAGCGAGACAGCAAGGCTGACGTGCTCAGCGAAGGTCGTAGCGAGAGCGAGGCGCCCATAAACATATGCGCCGACGAGCGCATGCCGCCGCGTGGCGAGCTCAGCGGCCAGGAGAGCAACGGAGACATGGAGTCACCTTGGAGTGGAATGTACACCGAGGTACCGCCTGCTGAGCCGTACGACCTGATAGCTCGCGAGAGCTGGGTGTCCGACGGCTCTGATGTCGACACCAGCGAGAAGAGGGAACCCATCGAGGAGGAGCCGCCCCTGGCGCCGAGTTTCCCGAAGGCGCGGCTGCACACGTGCCTGCAGTGCGGCGCCAAGTTCCCGACGCTGAAGGAGCTGCGCGCGCACAAGACGCTGGCGCACGCGCTGCCCACCTGCTCCGTCACCAAGACCTCGTACAGCCGCCTCGTCACCGCCAGGACCATCAAGAAGGAGGAGAAACCTGATAACATCACACTCACCAACTCCCTCATGACATTGGACTCGAAAGAATCGATAACATCAACAATACTAGAGGTATACGACCCTATGGAGTCGAAACCTAAGATCGAGGTGGACCGTATCATCAAACAGGAGACCAAGAGAAGACGGAGAGACTACACGTGCAGCACGTGCAAGGTGGACCAGTTGAACGAGGCCGCGTACCAGGCGCATCTGAAGATACACCCGCTGGAGTGCCTCACCTGCGGCAAGTGCTTCTACCGGAGAGCGAACCTAGCGCTACACTTAAAGACACATTTAGGaattaagaattttaaATGCGAGGTGTGTGAGAAGCGGTTCGGCACGCGGCAGAAGCTGAGCGAGCACCACAACGTGCACACGGGCCGCGCGCCCGTCAAGTGCACGCTCTGCAGCGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGAGACCGGCACCACCTGGCCAAGCGCGCCAAGGTGCGCGACTTCGTGTGCCAGTGCGGCGCGCTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCAGGAGACGCACGCGGCGCGGCCGCGCGCCTGCGCCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCCCTCGCGCGCCACCTGCGCCGCAAGCACAACCACCACTtcctgccgcccgcgcccgcacccgcgcccgcgcccgacaACGTGCAGTGCCCCGTCTGCAACCAGGTGTACCTGAGATCAAACCTACGGACGCATTTACAAACGCACACCGGCCAGCGACCGTTCCTGTGCATCATCTGTAACAAGTCGTTCACGACCAAATGGAACCTGAAGCTGCACCGCTGGACGCACATGAGCCGCTCGGCGAAGCCCTACAAGTGCTCGCTGTGCAAGGGCGCCTTCATCCGGCAGACGGAATACATATCACACATGAACGCGCACAAGTCGGTGCGGCCCTACACGTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGACACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGCCCGAGTGCGGCAAGTCCTTCCACCGCAGCTACTACCTGTCCGAGCACATGAAGGTGCACAGCGGCGCGCGGCCCTTCTCCTGCAACATCTGCGGCAAGACGTCCAGCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGCGAGCCCGTCGCCACCGAGGCCTAA
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCSLTSSKGSNYGSRTSTPMHSERSYRSRSRTPAIDDSAKWNGTRGADHDRFWRRTPSRSAKNTPQTNPSRNATPDIRIMDVNFENHSVSGTGPGQHAGNTFSMKNDKHQDTFQNPPVPDFEPQYAYYPEQPEDREIKFSRSAEYNAMDSSNLFTYNVPTLGGTGVKLVPAVPRRANDLVKVLPKPNNILLKSNMSGVQYLPPGVKPMHVVLPTAPAFVQKGLQNNMIMPSNVQNTQVQMNTKSATPPLASNPLNQITSGAFTPASTVVTQNSQIIYREMVHSIDGKPFITSMPTILGGENVTNLAQTSSMYQNVMVVDQFGNTSCMYTTPQQVMNKTCPTNMYNESGPPVPSINIDKSVENINDPKTIIIEVGPLVAPSENEEPICTVAPQQTSRSPVDKTEKTLEPVDPKCDAPGSSKGLKILSNIKVEVPVQHHKNMVNTVMDLTGSSDADYAVERSDTPEKILPDLDDNNQLMSDDTQPSSISSVDSMVSHTFSVIKNVGNPSKTSGDNKMDTDFSDSCPVPDLICNEKPSISPCSELSENCDNSTDRTSISPKPESREVSIELPEKKIQLSQKPVRHNTLRLNNIYVKKHKKVLQIKNAKSFPLKTTAKSDTDITPTSSGCRSPENFTMNKIHQTDRIENKEKPNLLQTISVEEIKEHDDNNDFDADTEEQSMDIEPVAPTSLDQPEEYVGGMDLVQVKEEINSSNEGGFSNETVTSDRELTPLETLRPINVITYGNIPNQDFNEESNDRELLDLEAASKNKQFVSMMNENYFGDNIYADYFTPDRVEAFDAEREAAAFKEGPKEGIYLWGEPSQKENEFVLPNFIHESYKIAESNGIDYSELGVREVQVDVEVDGCERDSKADVLSEGRSESEAPINICADERMPPRGELSGQESNGDMESPWSGMYTEVPPAEPYDLIARESWVSDGSDVDTSEKREPIEEEPPLAPSFPKARLHTCLQCGAKFPTLKELRAHKTLAHALPTCSVTKTSYSRLVTARTIKKEEKPDNITLTNSLMTLDSKESITSTILEVYDPMESKPKIEVDRIIKQETKRRRRDYTCSTCKVDQLNEAAYQAHLKIHPLECLTCGKCFYRRANLALHLKTHLGIKNFKCEVCEKRFGTRQKLSEHHNVHTGRAPVKCTLCSDTFRRYSNMVQHRDRHHLAKRAKVRDFVCQCGALFHSRAKLRWHQETHAARPRACAYCSDKFVHAASLARHLRRKHNHHFLPPAPAPAPAPDNVQCPVCNQVYLRSNLRTHLQTHTGQRPFLCIICNKSFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRQTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00000602;
- 90% Identity
- iTF_00327336;
- 80% Identity
- -