Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:17794161-17801080[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.051 13.8 2.7 1 23 268 290 268 290 0.98

2 12 0.00025 0.013 15.7 4.3 2 23 298 319 297 319 0.96

3 12 0.34 18 5.8 0.2 1 23 323 345 323 345 0.94

4 12 3.7e-06 0.00019 21.4 2.2 1 23 350 373 350 373 0.98

5 12 0.00051 0.026 14.7 0.2 1 23 377 400 377 400 0.94

6 12 0.013 0.68 10.3 0.3 3 20 418 435 417 441 0.92

7 12 0.0001 0.0054 16.9 2.9 3 23 451 472 451 472 0.98

8 12 0.2 10 6.5 0.5 2 23 491 513 491 513 0.97

9 12 7.5e-06 0.00039 20.5 0.5 1 23 524 546 524 546 0.99

10 12 3e-06 0.00015 21.8 3.5 1 23 552 574 552 574 0.99

11 12 2.9e-05 0.0015 18.6 0.8 1 23 580 602 580 602 0.98

12 12 2.3e-06 0.00012 22.1 0.7 1 23 608 631 608 631 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.051	13.8	2.7	1	23	268	290	268	290	0.98
2	12	0.00025	0.013	15.7	4.3	2	23	298	319	297	319	0.96
3	12	0.34	18	5.8	0.2	1	23	323	345	323	345	0.94
4	12	3.7e-06	0.00019	21.4	2.2	1	23	350	373	350	373	0.98
5	12	0.00051	0.026	14.7	0.2	1	23	377	400	377	400	0.94
6	12	0.013	0.68	10.3	0.3	3	20	418	435	417	441	0.92
7	12	0.0001	0.0054	16.9	2.9	3	23	451	472	451	472	0.98
8	12	0.2	10	6.5	0.5	2	23	491	513	491	513	0.97
9	12	7.5e-06	0.00039	20.5	0.5	1	23	524	546	524	546	0.99
10	12	3e-06	0.00015	21.8	3.5	1	23	552	574	552	574	0.99
11	12	2.9e-05	0.0015	18.6	0.8	1	23	580	602	580	602	0.98
12	12	2.3e-06	0.00012	22.1	0.7	1	23	608	631	608	631	0.98

Sequence Information

Coding Sequence: atgGAATTTGTGAAGGCTTGtcgtatttgtttaaatatggaTGTTAAATTGCATAACTTGCGGGCGTTTCCATTAGAATCTTATTATGATTCAGTTATAGGAAGTaatTTGCTCTATACAACAAACCTGCCATCATATGCATGCTATGAGTGTGCCCATCTGTTGAgaaagttttatcattttaaacaaaGGAGTTTGGAGAGCCAAGCAGCTCTCACTGGGATAGTTGATAAGTTTGGAAAGCTATCACCtccagaaataaaacaaataaaaaggcAGAGTCTATTACAACTTTCTAGCACTAACATCATCTACATAGAAAATCTGAATTCTATATCAGATGTCGAAATCAAAATAGAACGGAATCAACAAGATGGATTTGAAGAACTAGATGATATTATAAAGGAGGAGAATGATGATTATTTGTCAGTGGCCCCGCTGTCCAGTGATGATGATGAGCCACTATCTCATCACAAGGAGAAGAAGGAGCAACATGTTATTGAGATTGAGAAGTTTGATATGAAGGAGGATGTTGATGGTATTGATTTTAACGAATCCAACGAAGATCAATCCCAGTCTCTACCCGATATTAGTGAAATTATAGTGAAGAAGAAAAAAGGCCGGCCTCGGAAGACACCAGCTACATCGAAATGCAAGAAAATCACCAAATCCAAAGCCAGTATTAAGAACGAAAGTAATGACGACCTCAGACAGTTTATAACGGTTATTTCACTGACGGAAGCGGAACAAATAGAAGAGGTACAGAAACGTAAGACCACATCCAACTACCTGAACTCTCCGTATCAATGTGAACTGTGCTTCAAAGGGTTCATACACCCGGATACTTGGAACCATCACGTCTCTAAACATTCCCCGGCCGCAGGCGACATAGAGTGTCATATCTGCAAGTTTAGGTTCAAGACGAAGCGCGCGTTTCAAAAGCATTTGTCATCTCACGAGAAGAAATACGCCTGTAACTCTTGCCCATACGTATCTACGAACATGACTCAAGCAAAACAGCATCAAGGTTGGCATAACGGCGTCACGTTTAAGTGTAAACATTGCGGTGAAATCTTTACTGTGTGGACGTCATACATGAGTCACATGCGCATCAAGCACCCGTCGGAGTTCATATGCGGCATATGCGGGTACTCCTTCATCAGTAAACTGGGGCTCACCATGCACAAAACCATGATGCATAAAGATGTCTTAGAAAAATCTACTGAAGTGAAGGAAGAAGAAGAACCTTATTGCGCAGAGTGCGACGTTAAGTTTATATCAACGAAGGCGTATAAACGACACATGGTCATGTCCGTCAAGCATACCAATAATATGGACTCTGTTAAAGGCTGTCGGAACTGTGGGGAAACATTCAAGACATCAGAGGAACTACGGCTCCACCATCGCAAGGAACACACGAGAACCAGACCCAAGAACTATGGCAAGAAACAATCTAATTCGTGGCCCGCTAAGTGTGAACATTGTTCTGAGGAGATCGCGAACGCGCGCGCGTACTGGACGCACTTCCGGCGCGCGCACCCCGACAAGAACTACCCCGTGCAGAAGGACTACGTGTGCGACGTCTGCGGGAAGAGCTTCCGGGGCAACGCGTTCCTGGTGTACCACAAGCGCACGCACACGGAGGAGCGCGCCTACAAGTGCTCGCAGTGCGGGAAGGCCTTCTACAACAGGACCAACCTGCACGTCCACGAGAAGACGCACTCCGACCACCGGCCCTACCCCTGCTCGCTCTGCTTCAAGGCATTCAAGGGGAAGGGCGCGCTCAACAGGCATTTTAGAAGCCACACGGGGCAGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGAGCTTCACGCAGTCCAACAGCCGCAAGCTGCACGTGCGGACCGTGCACCTGAAGCAGCCCTCGCCCTACCTCAGCCGCGCCAGGCTCGAGCGCAGGGCCAAGCCCGCCAAGGACGAGCCCGCCTTCATATACTAA
Protein Sequence: MEFVKACRICLNMDVKLHNLRAFPLESYYDSVIGSNLLYTTNLPSYACYECAHLLRKFYHFKQRSLESQAALTGIVDKFGKLSPPEIKQIKRQSLLQLSSTNIIYIENLNSISDVEIKIERNQQDGFEELDDIIKEENDDYLSVAPLSSDDDEPLSHHKEKKEQHVIEIEKFDMKEDVDGIDFNESNEDQSQSLPDISEIIVKKKKGRPRKTPATSKCKKITKSKASIKNESNDDLRQFITVISLTEAEQIEEVQKRKTTSNYLNSPYQCELCFKGFIHPDTWNHHVSKHSPAAGDIECHICKFRFKTKRAFQKHLSSHEKKYACNSCPYVSTNMTQAKQHQGWHNGVTFKCKHCGEIFTVWTSYMSHMRIKHPSEFICGICGYSFISKLGLTMHKTMMHKDVLEKSTEVKEEEEPYCAECDVKFISTKAYKRHMVMSVKHTNNMDSVKGCRNCGETFKTSEELRLHHRKEHTRTRPKNYGKKQSNSWPAKCEHCSEEIANARAYWTHFRRAHPDKNYPVQKDYVCDVCGKSFRGNAFLVYHKRTHTEERAYKCSQCGKAFYNRTNLHVHEKTHSDHRPYPCSLCFKAFKGKGALNRHFRSHTGQKPYECEVCGKSFTQSNSRKLHVRTVHLKQPSPYLSRARLERRAKPAKDEPAFIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185525;
90% Identity: iTF_00327273;
80% Identity: -