Tni011144.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- Rfx2
- Assembly
- GCA_003590095.1
- Location
- NC:5078307-5096084[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-37 8.9e-34 115.7 0.0 3 78 245 320 243 321 0.97 2 2 0.53 4e+03 -1.8 0.0 24 39 651 667 638 673 0.74
Sequence Information
- Coding Sequence
- ATggataatataatagtaaaaaaaacaattgaaatcatTGATGACTATCCGAATAATGCTGTACTAATCTTTGAAGCAGAATGTCTAGAAGATTTTGAGTGCGCGGGCGACGAAGTGCTTGTTGAGTCGTCGCCGCCTGCCTCACCGGACATGGCGGCGCGGCTCGCGGCTCCCACAcagGGTGGCGGCGCCGGCGGTGGTGCGTCGCCGAGCGCCGTGCGTGAGCTCATCGTGATACCGGAAATACCCAATGCTATACATTTACAGCACGCCATGCAACAGGTAACCAGTACTGTCGTGGAGGTGAATGGAGACAGTTCAGGTCACTCCAGTCCCTCAGCTGATGCTCAGCACACCTACATCACAGTGGCAAGTGAGTTGCAGGGCGCTTGGAGCCACGGCGTCCACGTGAAGACCGAGGACCATAGCGACCAAGAAAGTGAGGGTGGAAACGGCGTCAACTACCACGTCCAATATGTTACGGAGCCGCAAGAAATATACACACAAGGGCACCAGACACATATGGACCCGTTGCGCTCCTACCCTGTGTACGGAGTGGCGACCGTCGGCACTGAAGCGACTGCGGAAGGAACGTCTGCTGACAATGGTTGGGGCGGTGCGTCTTCAGCTGAATATACCGCTTACGGCGTTGTGGTGGCCGGCGACGAGGCGGAGGCCCCGGCGTCCCCGGCCACGCCGGCGGGcgcgccgcagccgccgcgCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCCGAAGGCGTGTCCCTCCCGCGCTCGACGCTGTACGCTCACTACCTGCGACACTGCGCCACGCACCGCCTGGAGCCGGTCAACGCCGCGTCCTTCGGCAAGCTCATCCGCTCCGTGTTCATcgggctgcgcacgcgccgcctgGGCACGCGCGGGAACTCCAAGTACCACTACTACGGGATCCGAGCCAAGCCGGGCGTCGAGCAGGACCACAGCGACCTGAGGGACGACATCCTCGACCAGCATGATAACCTTGACGATAAGACCGATGTCATGGATCTTCAGGAGGGCCGGCGCGGgacgggcgcgggcggcgcgcgcgcggccagCAGCAGCCCGGCGCACGTGCACCGCGCGTTCCTGGGCCCGGCGCGGCCGCCGTCGCCGCCCGCGGGCCCGGCCGGGCTGGCGGGGCTGGgcgaggcggcggcgggcgcgctgcggCGCCACCACCGCGCGCACGGCGCCGCGCTGCTGGCGGCCGTGGCGGCGCTGGACACGGCGGCCccgctgggccgccgcgcgctgctgCGCCTGGCCGCCGAGCGCGCCGGCCGCGCCTGGCTGCGCCGCGCCGACCTGCAGCTGTACCAGCGCGCCGTGGACCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGCCGCAACTCACGCAGGCTATCCGCAACTTCGCGAAGAGCCTGGAGGgcgcgctggcggcgggcgcgggcgcgggcccgGCGGGCGGGGCCCCGGGCCccgctgcgcgcgcgcaggcctctgcggcggcggcgctgtcGGCCGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCCGCCAGGGCCGTGCTCACCAACCAACACCAGATACACCAGATGCTGGCGGACCTGAATCGCGTAGACTTCCGCGTGGTCCGCGAGCAGGCGGCCTGGGCCTGCAGCTGTGGAAGCGCCGCCACCGCGCACAAGCTGGAGGCTGATTTCAAGGCCACGCTGGGCCGCGGCGCGTCGCTGGAGCAGTGGGCGGGCTGGCTGGAGGCCTGCGTGCGCCAGGCGCTGGCCCCGCACGAGCGCCGCCCCGACTACACGGCGCGGGCCCGCCGTCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGGGAGCTCACGCTGCGGTCTGCAGCATCATTCGGTTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGTCGCGTGGCCGCACATCTCAACCAGCCGCCCATCGCAGTCATGCAACGCGATCTGGAAAATGACGACGAAGATATCCCTGAGGACCAGCTTCAGGACGAGCCTGATGATGAAGACCAGGACTGGGAGTGGGACGATGACGAGGAGGAAGACGACGAGCCTGAATGCAAGAAGGCCAAGCTGCCGGTCGAGTAG
- Protein Sequence
- MDNIIVKKTIEIIDDYPNNAVLIFEAECLEDFECAGDEVLVESSPPASPDMAARLAAPTQGGGAGGGASPSAVRELIVIPEIPNAIHLQHAMQQVTSTVVEVNGDSSGHSSPSADAQHTYITVASELQGAWSHGVHVKTEDHSDQESEGGNGVNYHVQYVTEPQEIYTQGHQTHMDPLRSYPVYGVATVGTEATAEGTSADNGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPQPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPGVEQDHSDLRDDILDQHDNLDDKTDVMDLQEGRRGTGAGGARAASSSPAHVHRAFLGPARPPSPPAGPAGLAGLGEAAAGALRRHHRAHGAALLAAVAALDTAAPLGRRALLRLAAERAGRAWLRRADLQLYQRAVDLLLPDVLRPIPPQLTQAIRNFAKSLEGALAAGAGAGPAGGAPGPAARAQASAAAALSAALRRYTSLNHLAQAARAVLTNQHQIHQMLADLNRVDFRVVREQAAWACSCGSAATAHKLEADFKATLGRGASLEQWAGWLEACVRQALAPHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHLNQPPIAVMQRDLENDDEDIPEDQLQDEPDDEDQDWEWDDDEEEDDEPECKKAKLPVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326820; iTF_00000919; iTF_00000053; iTF_00185039; iTF_01221230;
- 90% Identity
- iTF_00326820;
- 80% Identity
- -