Tsar015229.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- ZFX
- Assembly
- GCA_002249905.1
- Location
- NNAY01001601.1:1320-12255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 1.2e+02 3.2 0.1 3 23 25 45 24 45 0.94 2 15 0.71 76 3.9 2.6 1 20 1004 1023 1004 1027 0.76 3 15 0.00048 0.052 13.8 3.5 2 23 1112 1134 1111 1134 0.97 4 15 0.0017 0.18 12.1 0.3 2 23 1147 1168 1147 1168 0.98 5 15 1.2e-05 0.0013 18.8 2.3 2 23 1171 1192 1170 1192 0.97 6 15 0.015 1.6 9.2 0.4 1 23 1198 1220 1198 1220 0.95 7 15 1.7e-05 0.0018 18.4 4.5 2 23 1227 1248 1226 1249 0.95 8 15 0.076 8.1 6.9 3.7 5 23 1262 1280 1261 1280 0.97 9 15 1.5e-05 0.0016 18.5 1.5 3 23 1287 1308 1286 1308 0.97 10 15 0.007 0.75 10.2 0.3 2 23 1324 1344 1323 1344 0.97 11 15 4.6e-05 0.005 17.0 0.7 1 20 1350 1369 1350 1372 0.92 12 15 1.8e-05 0.0019 18.3 0.8 1 23 1380 1402 1380 1402 0.99 13 15 0.0016 0.17 12.2 3.2 1 23 1408 1430 1408 1430 0.97 14 15 1.6e-06 0.00018 21.6 3.9 1 23 1436 1458 1436 1458 0.99 15 15 0.00021 0.022 15.0 7.2 1 23 1464 1486 1464 1487 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAGCTCGGCTGTAAGCTCAATGTCCCCGGGAGGATCAaacggcggcggtggcggggCAGTGGCCTGTCCTGTTTGCACGCTGTACCTGCGGGAGGGCATCAGTCTGCAAAAGCACTTGGACACCCATCCAAAGGAGCAAGTGATAGAGGCCTTGATCAGGGCGAGTGGCGCGGGTGGCGCTTCGGCTCTCCTTAGTCAGGCTTGTGCACCACAGCCACAGCAGCAGTCTCCGGCACCCGCGCCTACGCCTACGCCGAGCCCCGGTGCGaaccagcaacagcagcaaccacCAGCAGCCTCGCCGTCACCACATGTTCCTCACGCTCAGTCGCCTTATCCGATTGGGCCAATTTTCGAGTGCCCGCCGATCAACGCCATGATACCGCCGCCCCAGTTCGCGTCGTTCAGCTATCAGCAATTTGTTAATAATGGTACAATGATGATACCCGCGCAGTACGCAATGGCTCAAGCGCAGGCTCCTCCAACAAGTCAGATGATGCAGATGCTGTACAGTCCATACGGCATGTACCATCAGCAGCAGATCCCTACGGTTCAAATGATCTCGGCCCCGCCAGCGATGATGCCAACTTCGACAACGACGATGCCGACGACGGTGCCGGCCGTGACGACCCGCATGAGGCCGGTCACAAGCACGAGCAACATCACAATTACCGAGGCACCTACGACGACGCCGATGTCGGTATCGCCACCGAGAACGACGAGTTGCgtgcagcaacaacaacagcccGAACCCCAACCCCAGCCTCAGCAGCTCGACGTCGAGCAGTCGCCTAAACAGCAGCCAACACAGATCGTTCATGAGATCATACCAGGTCCCGATCGCATTCTGCCGGATCTGGAGATGCCTCCGTCGCCAGAGCCGACGAACGTCGAGCCCGAGCACGAAGAGGGTCACATTGAACACAGAGAACAGCAGACTCAGAATACTTGCCCCCAGGAGGAGCAACGCCGCGTTGATCAATATCAGAGTGAGGGTCCACCAACTTTAATCAGTAATTCTCGCGATGACGCTACTGATGATGACAAGACTGAAAGGATTCTACCAGATATTGAGGATAACGAAGGAATCGAATCGCTGATAGTTCGAACTATAGAAAACAGGGTAGAAAGTCACAATGACACTGAAAGGCAGGTGGCAGAATCTGTGGAGCACATGGAAATCGCGATGCACGAAGAACAAGCAAAAGATGAGTCCATAGAAAATATCCAATGTAGTGAAACTCTAGAGAATTCTATGGAAGTCAAAGATAAGTCTAATGATGAGCAAACCGTATGTGACACCGTAGAGCCCCAAGATCTGACGGTCGAAGAAAGCCGTATCAACAATAGTACCCATAAGCTTGAAGTCGAGAAAATTGATAGAATGTTAGATAACATGGAATCCGAATTTAGCAATGTAGAGTTGAACAACAAAGTTGATGAGGAGGTACATAACGAAAAGCCTCAAGAAGAAATTCAAGACGCCTTATTGGAAGAACCCATTGATAAGCATAGCGAGGATGACGAGAACACAAGTGTATCGTACCATAAAAATAGTCCAGAGCCGATCGAATGTAAGATTATCCATGCTCACGAAGATACAGACGTGTCTTCCGTCGCCTCCTCGGACTCTATTCACTGCGACTTGGAAATTCAAAAGATCATGACCTCGTCCTATCACTACAAGTGCTCGCACTCTTTACCAACCTCGCCAGTAAGCAAAAAGCACTTCTATCGGTCACTTTCTCGCGCCTCTCAGCGTTCAGACTTTGATCATTCGAACGAAAATCTTTACTCGTACCCGGTGGGTTTTGAGGCTACCTCACTGCAAGATTACCTCAAAACCAATTACAACGACGAGGACATGGAATTGGAAGAACCTCTGCCGCACTCCTATATGAAGCAAAACAGTGGGATCATTGCGGAACGTGCTAATTCTCACACACCTCTCTCTGCAAGCATAAGCAGTGTATTCGTACTAAAAGCACGTCGTAGCAAAGTTCCCACTTCTCCAGTTTCCATTCGATCAGGTTTCTCTTATGGACACATGGATGAAGAAGATgaggaagaagatgaagaagactCGGATGCCGAAAGCTGCGACAGTCCCGACGAAAAAGATGAAGACGACGAAGACTTGgatgaggaagaagagagattACTTATGGAGCACAAAACCATAGAACGCGTTGACGTGAAAGAAAACTTCCATGAAGAATGCAAAGCTGCGATAGCAGCCGAAATTATGCTAAAGCAGCAGCCACAACAGGAACAACCCGCAGATTTCCGAGCTCAGAGTCTTATGGCTGAACATTACCCAGCGGGCCAATTTCCACTGGATAGTCATCACTCCTCGACTACACAGCAACAACAATCGACCGTCGTTTCAATGCATCACGAGACTTATCCTCTATCGGCAGAAATATCACAAAATCCATTTAATATGACTGAATGCGTGGACCCGATGACCAGTACAGATTCAAAGAGCTACTCTAGTTCCAGCAAGTTGACGATGCAGAAACCAACGACCGAGCTGTTAAACATCAGCGAGGATGCGCACGCGGGTCCCATTAACGTTTTCGAAATAGAAGAACCACCGATTTATGTACCAAGTTCCTTTATAAGCGAGTCATCGCAAAAAGCCGTGAGTGGCACGAGCCACCAGTCGATGTCGAGCAGCGAAAATGGCGCCGGTAACGACGAAGAGGTCAAGAGCGTGAATATGAGGGCAGACGAGACGATGCCGCCTAGAGGTGAATTGTCGGAACAGGAAAGCAACGGTTGTACTGAACAATCAGCTTGGCAGCTCTACATGGGACAAGACTCATCGCGCATGTCGACGTCCTACGATCTGATGGCGCGCGAGAGTTGGGAAGAGTCGGAGGGCTCAGATCACGAAGACAACAACGGAGGCCCTCTCCTGGACAGCCGCTCTCTCGCAACTCATTTCACCGCAAGTCTCTTTCCCGACCGCGACCGTAAAACGCCGACAAGACGTATCTTTAAGTGCTCCCACTGTCCAGAAGTGTTCGAGTGCCCCAAAGAACGCCGTGTTCACAGTACAATGGTGCACAAAGAAGCTGGTCCATCAGGGTGTAGCAACGACAATATGGACAACCAACAAGAGCTGAAAGACATCAAGTTGCTAGACGGTCGCGCTAATGTTTTCGAAGATATGTTCTTGCCAGGTAGTTTGCAGCAGGCTTACCTGCATCAACAACCACCGCTGCTTCATCAGCTTCAACCACCTCAACACTCGAGCTCTGCCAAGGCCGATACCGATCCTAAGATGGATGCGCAACATCTGTCGACCGTAGCCGAGGTTACGTGTACTCTGTGTAATCAACGTTTCAGCAGCGAAAAGTCACTGCAGATGCATCACAGGCGCATGCATGCAGCCGAACCTGCGAAACGTGTGCGTGAAAATGCCAAGTGTCAAATTTGCAGCGAGGAGTTCACTTCCGTTGCTAGCTTCAATCTTCATCTGAAGATTCACCCTCTCGAGTGTGGACAGTGCGGCAAGTACTTCTATcgcaaacaaaatttcaaactcCACATGAAGCGACATCTCGGTATCAAGCCATTCCCCTGTACGCTCTGCGACAAGGCCTTCCTAACCAAACAAAAGCTCGATGAACATACAAACGGCCATACTGGCAATGCTCCTGTCAAGTGTAACCTCTGCAATGAAACTTTCAGGCGGTACTCTAATCTTACACAACACAAAAATCGACACCATCTCAACATCAAAAAGAAGCTCAAAGACTACATATGCCATTGCGGTGAGGTCTTCCACACGAAGAAGAAACTTGCATGGCACAAGGAAACCCACGATGAGAAGCCCAAGGCCTGTACCTACTGCAACGAGCGTTTCATACACATGGCTAGTTTGACCCGACATATGCGCCGTGCCCATAACCGTCGCTTCGTTCCCGATGCccagcgcgagagcgaaaacgTTGAGTGCCCGATCTGCAAATGTATTTATCTGAGGTCCTCGCTGGCCGTGCACATGCGCGTACACAACGGCGAACGACCCTACGAGTGCCAGGTTTGCTCCAAGGCCTTCAGCACGAAATGGAATTTGCAGCTGCACAAGTGGACGCACGCAGCGCGTAGTACCAAACCGTTCAAGTGCAATCAATGTAGCGCCGCGTTTTACCGAAATAGTGACTACACGGCCCACATCAATTCTCACCGAAACGTAAGGCCGTACACGTGTAACTACTGTGGCGCCCAGTTTATCAGGAAATACAATTGTCTGCGACACGTTAAGGAGCATGAGGAAAACAAAGCGTATACTTGCGACATCTGCAACAAGACTTTCCACAGATCGTACTATCTCAAAGAGCATCTACGGGTGCACTCGGGGGCGCGACCCTATACCTGTCACATCTGCGGCAAATCGAGTAGCACAAAGTCCAATCATAATAAACACGTCAGGATTCATCACGCGCGTGAGCCTGTGAATACGGAGAATTAA
- Protein Sequence
- MDLSSAVSSMSPGGSNGGGGGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIRASGAGGASALLSQACAPQPQQQSPAPAPTPTPSPGANQQQQQPPAASPSPHVPHAQSPYPIGPIFECPPINAMIPPPQFASFSYQQFVNNGTMMIPAQYAMAQAQAPPTSQMMQMLYSPYGMYHQQQIPTVQMISAPPAMMPTSTTTMPTTVPAVTTRMRPVTSTSNITITEAPTTTPMSVSPPRTTSCVQQQQQPEPQPQPQQLDVEQSPKQQPTQIVHEIIPGPDRILPDLEMPPSPEPTNVEPEHEEGHIEHREQQTQNTCPQEEQRRVDQYQSEGPPTLISNSRDDATDDDKTERILPDIEDNEGIESLIVRTIENRVESHNDTERQVAESVEHMEIAMHEEQAKDESIENIQCSETLENSMEVKDKSNDEQTVCDTVEPQDLTVEESRINNSTHKLEVEKIDRMLDNMESEFSNVELNNKVDEEVHNEKPQEEIQDALLEEPIDKHSEDDENTSVSYHKNSPEPIECKIIHAHEDTDVSSVASSDSIHCDLEIQKIMTSSYHYKCSHSLPTSPVSKKHFYRSLSRASQRSDFDHSNENLYSYPVGFEATSLQDYLKTNYNDEDMELEEPLPHSYMKQNSGIIAERANSHTPLSASISSVFVLKARRSKVPTSPVSIRSGFSYGHMDEEDEEEDEEDSDAESCDSPDEKDEDDEDLDEEEERLLMEHKTIERVDVKENFHEECKAAIAAEIMLKQQPQQEQPADFRAQSLMAEHYPAGQFPLDSHHSSTTQQQQSTVVSMHHETYPLSAEISQNPFNMTECVDPMTSTDSKSYSSSSKLTMQKPTTELLNISEDAHAGPINVFEIEEPPIYVPSSFISESSQKAVSGTSHQSMSSSENGAGNDEEVKSVNMRADETMPPRGELSEQESNGCTEQSAWQLYMGQDSSRMSTSYDLMARESWEESEGSDHEDNNGGPLLDSRSLATHFTASLFPDRDRKTPTRRIFKCSHCPEVFECPKERRVHSTMVHKEAGPSGCSNDNMDNQQELKDIKLLDGRANVFEDMFLPGSLQQAYLHQQPPLLHQLQPPQHSSSAKADTDPKMDAQHLSTVAEVTCTLCNQRFSSEKSLQMHHRRMHAAEPAKRVRENAKCQICSEEFTSVASFNLHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTLCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRNSDYTAHINSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDICNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01274744;
- 90% Identity
- iTF_01037267;
- 80% Identity
- -