Basic Information

Insect: Trichomalopsis sarcophagae
Gene Symbol: -
Assembly: GCA_002249905.1
Location: NNAY01001637.1:702-2996[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.5 1.6e+02 2.9 2.1 1 23 25 48 25 48 0.92

2 12 0.00021 0.023 15.0 1.1 1 23 180 202 180 202 0.95

3 12 0.034 3.6 8.0 0.2 1 23 210 233 210 233 0.94

4 12 0.0027 0.29 11.5 4.4 1 23 283 305 283 305 0.98

5 12 0.00014 0.015 15.5 0.2 2 23 396 417 395 417 0.97

6 12 7.5e-07 8e-05 22.7 1.2 1 23 422 445 422 445 0.96

7 12 1.5e-05 0.0016 18.6 0.3 1 23 474 496 474 496 0.97

8 12 3.5e-07 3.8e-05 23.7 0.8 1 23 506 528 506 528 0.96

9 12 1.5e-06 0.00016 21.8 1.3 1 23 534 556 534 556 0.99

10 12 6.5e-06 0.0007 19.7 0.2 1 23 562 584 562 584 0.98

11 12 3.2e-06 0.00034 20.7 2.4 1 23 590 612 590 612 0.98

12 12 0.00025 0.027 14.7 0.3 1 21 618 638 618 639 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.5	1.6e+02	2.9	2.1	1	23	25	48	25	48	0.92
2	12	0.00021	0.023	15.0	1.1	1	23	180	202	180	202	0.95
3	12	0.034	3.6	8.0	0.2	1	23	210	233	210	233	0.94
4	12	0.0027	0.29	11.5	4.4	1	23	283	305	283	305	0.98
5	12	0.00014	0.015	15.5	0.2	2	23	396	417	395	417	0.97
6	12	7.5e-07	8e-05	22.7	1.2	1	23	422	445	422	445	0.96
7	12	1.5e-05	0.0016	18.6	0.3	1	23	474	496	474	496	0.97
8	12	3.5e-07	3.8e-05	23.7	0.8	1	23	506	528	506	528	0.96
9	12	1.5e-06	0.00016	21.8	1.3	1	23	534	556	534	556	0.99
10	12	6.5e-06	0.0007	19.7	0.2	1	23	562	584	562	584	0.98
11	12	3.2e-06	0.00034	20.7	2.4	1	23	590	612	590	612	0.98
12	12	0.00025	0.027	14.7	0.3	1	21	618	638	618	639	0.94

Sequence Information

Coding Sequence: gTTCAAGAAAATGATGGTTTACCTCGGGTTATTTGCACAAACTGTCGCAATCTAGTTTACATGTCTTACAATTTCAAATGCCAAGTTGAAAAATGTGATCAAGATCTTCGCCATTCCCTTCTTATGAGACATTCAACAAACCATTGGCCTGAAACTATTACCACAATAGAGTCTATGGTACCATATGCtcaaaaaaacattataaattctTGTATGGCGATCCAAAATGTTGAAAACAGTACAAATACCCATGagcaatttttattcgaaatagGAAATGCATGTGACAtgaacagcagcaacagtacGTTTGAACCTAATATCTTAGttgcaaaaaataacacaGTATCTCAAGGAATGAGTAATCTCTCATTGGAAACCCATAGATGTCAGGAGATTCAAATCAATTTTGAAGCCCATTATTCCATGAATGAGCAAAGtgataagaataattttattggaaCAGAATCACAAGCAGTGAAAGAAAATAGTAATCAGAGTGATGATGAAAAACCTCTGATATTGCGAACAAAACGTCATAAATGCAAGTATTGTATAAAATCATTTGCTAATCTATCTCTGTTAGAAAAACATGCAGTAATTCACAAAAAAACACCTGAAACAACATACAGTTGTTATTTATGTGATCAACAATTTCCATCAGTTGATAAAGTTCAAAGTCATGCATTATCTGTTCACAATCTAGACATGtgtaaagataaaattatgGACTACAATAAGAGACAAAGAAGTAGTGATgctaataatagaaaaatatgtgATGATAGCAATAGCAATGAATCAAATTCATCGCTTTACAATACAGAAGATAACGGAATTGGtcaattttattgtaaattttgtcCTAGACAGTTCACCTATCACAAACCTTTTATAGATCATATCAAAACACATCCAAATTATAGTGATAAATTAGGGAAATTAGTGAAATTAGTGAGCAATTTCGATGAAATTCCAGATGCTTCTTCACACATTCTTGATGAAGAAGGAAATTCACAATCACAAAGTTTTGAAAACAACGTTCAAGAAAATTcgaataatattaatgattttactGATAGAAATAGTACAGATCTGACTGACAATGATGATAATGATCTTAATGAAGGTGATAGCAGCAATGATAATGATTCAAATGATGACAATATACCTGAATCAAGTATACAATGCAATCAGTGTGGTGTAATTGTTGCCACAATGAGGAATCTCAAAAGACATCTTTTGACTCACACtggatttaaatataattgttcaATATGTGGCAAAGATTTTTCAAGATCAGACAAACTTAAAGAACATCAACAATTAAAACACAAGGAAGAGTTATTTGATTCAGATGACGAAGCTGTGGATGACAATTCACCAACCAAAAGCAAAaagGACAAAAGTAATAGGCCTCACAAATGTTCGATATGCCCAAAAGCATTTGCTCAAGCTCAATCACTGGCTAATCATGAAGAAAGGCACAGGCGCGCTCGAGATGTGCAAAAACGTTATTTGTGTGAAGTCTGTAGTAAATGCTTTGCTCAGAGTGGTTCATTAGTAGCTCATATGCGTACGCACACAGGCGTAAAACCATATGTTTGCAATATTTGCAGTAGAGGTTTTACTAAAAGCACCTATCTACAATTGCATCTTAGAACTCACAGTGGAGAAAAACCATACATTTGTCAGTATTGCAGCAGAGCTTTTGCTAGAGCAAATACTTTGGCTAGACATATAACTATGCATACAGGAGAAGCTAAATACCAATGTCAAATTTGCTCCAAGTCCTTTAGACGACTAACTTCTTTGAATGAACATACTTACACTCATACAGGACAAAGACCTTATGCTTGTAAAATATGTTCCAAAAGATataataatgctggatcttTGTATGCACACACAAAAAAGTGTAAAGTTACACAAGCCAATGCAGTACAGCAGAGCAATGACAAAACACCACCACAAACTGACATAGATGCTGCACCAcaagttttgatttttacagaAAAGAAATCGGATGAAACTATAACTGACAGAACAATCGCAACTGAACCATCTTGTCAATTTATGGTCGCAAATGTGCCTGAGCAAAAAACAATGACAACAGATATGCTTGAACCATTTACAATTCAAGAGTTGCAGGTATGTGacttaaattcaaaacaatttaaaacaCCTTATTATGGGTTGTATCCAAATATGtaa
Protein Sequence: VQENDGLPRVICTNCRNLVYMSYNFKCQVEKCDQDLRHSLLMRHSTNHWPETITTIESMVPYAQKNIINSCMAIQNVENSTNTHEQFLFEIGNACDMNSSNSTFEPNILVAKNNTVSQGMSNLSLETHRCQEIQINFEAHYSMNEQSDKNNFIGTESQAVKENSNQSDDEKPLILRTKRHKCKYCIKSFANLSLLEKHAVIHKKTPETTYSCYLCDQQFPSVDKVQSHALSVHNLDMCKDKIMDYNKRQRSSDANNRKICDDSNSNESNSSLYNTEDNGIGQFYCKFCPRQFTYHKPFIDHIKTHPNYSDKLGKLVKLVSNFDEIPDASSHILDEEGNSQSQSFENNVQENSNNINDFTDRNSTDLTDNDDNDLNEGDSSNDNDSNDDNIPESSIQCNQCGVIVATMRNLKRHLLTHTGFKYNCSICGKDFSRSDKLKEHQQLKHKEELFDSDDEAVDDNSPTKSKKDKSNRPHKCSICPKAFAQAQSLANHEERHRRARDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNICSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICSKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKVTQANAVQQSNDKTPPQTDIDAAPQVLIFTEKKSDETITDRTIATEPSCQFMVANVPEQKTMTTDMLEPFTIQELQVCDLNSKQFKTPYYGLYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01036507;
90% Identity: iTF_01037260;
80% Identity: -