Nvit003287.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- -
- Assembly
- GCA_009193385.2
- Location
- NC:33160500-33164508[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.7 1.4e+02 2.8 2.1 1 23 88 111 88 111 0.92 2 12 0.00024 0.02 14.8 1.1 1 23 243 265 243 265 0.95 3 12 0.038 3.2 7.9 0.2 1 23 273 296 273 296 0.94 4 12 0.0031 0.26 11.3 4.4 1 23 346 368 346 368 0.98 5 12 0.0009 0.075 13.0 0.2 2 23 456 477 455 477 0.97 6 12 6e-07 5.1e-05 23.0 0.7 1 23 482 505 482 505 0.96 7 12 1.7e-05 0.0014 18.5 0.3 1 23 534 556 534 556 0.97 8 12 4e-07 3.3e-05 23.6 0.8 1 23 566 588 566 588 0.96 9 12 1.7e-06 0.00014 21.6 1.3 1 23 594 616 594 616 0.99 10 12 7.4e-06 0.00062 19.6 0.2 1 23 622 644 622 644 0.98 11 12 3.6e-06 0.00031 20.6 2.4 1 23 650 672 650 672 0.98 12 12 0.00029 0.024 14.6 0.3 1 21 678 698 678 699 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGGTCAACATCTACGAGACGAGCCGGACTAATCACGTCGCTGGCGATAATGCACTGCTCGGGAACCAGGATGCAAACGGAACCTGCCGGCTTTGTCTCGGGACCTGTAGCTCCACCGATCAACGATGGGCTCTGTTCGCTGGCGATTTGCCCCAAAAGCTCATGGCATTCGCCGCTGTACAGgtTCAAGAAAATGATGGTTTACCTCGGGTTATTTGCACAAACTGTCGCAATCTAGTTTACATGTCTTACAATTTCAAATGCCAAGTTGAAAAATGTGATCAAGATCTTCGCCATTCCCTTCTTATGAGACATTCGACAAACCATTGGCCTGAAACTATTACCACAATAGAATCTATGGTACCATATGctcaaaaaaacattataaattCTTGTATGGCAATCCAAAATGAAGAAAACAGTACAAATACCCATGAGCaatttttattcgaaataGGAAATGCATGTGACATgaacagcagcaacagtacGTTTGAACCTAATATCTTAGTTGCAAAAAATAACACAGTATCTCAAGGAATGAGTAATCTCTCATTGGAAACCCATAGATGTCAGGAGATTCAAATCAATTTTGAAGCCCATTATTCCATGAATGAGCAAAGTgataagaataattttattagaaCAGAATCACAAGCAGTGAAAGAAAATAGTAATCAGAGTGATGATGAAAAACCTCTGATATTGCGAACAAAACGTCATAAATGCAAGTATTGTATAAAATCATTTGCCAATCTATCTTTGTTAGAAAAACATGCGGTAATTCACAAAAAAACACCTGAAACAACATATAGTTGTTATTTATGTGATCAACAATTTCCATCAGTTGATAAAGTTCAAAGTCATGCATTATCTGTTCACAATCTAGACAtgtgtaaagataaaattatGGACTACAATAAGACACAAAGAAATAGTGATGctaataatagaaaaatatgtgATGATAGCAATAGCAATGAATCAAATTCATCGTTTTACAATACAGAAGATAACAGAATTGgtcaattttattgtaaattttgtcCTAGACAGTTCACCTATCACAAACCTTTTATAGATCATATCAAAACACATCCAAATTATAGTGATAAATTAGTGAAATTAGTGAACAATTTGAATGAAATTCCAGATGCTTCTTCACACATTCTTGATGAAGAAGGAAATTCACAATCACAAAGTTTTGAAAACAACGTACAAGAAAATTCtaataatattaatgattttactGATAGAAATAGTACAGATCTGACTGACaatgatgataatgatcttaATGAAGGTGATAGCAGTAATGATAATGATTCAAATGATGACAATATACCTGAATCAAGTATACAATGCAATCAGTGTGGTGTACTTGTTGCCACAATGAGGAATCTCAAAAGACATCTTTTGACTCACACTGgatttaaatataattgttcAATATGTGGCAAAGATTTTTCAAGACCAGACAAACTTAAAGAACATCAACAATTAAAACACAAGGAAGAGTTGTTTGATTCAGATGATGAATCTGTGGATGACAATTCACCAACCAAAAGCAAAAagGACAAAAGTAATAGGCCTCACAAATGTTCGATATGCCCAAAAGCATTTGCTCAAGCTCAATCACTGGCTAATCATGAAGAAAGGCACAGGCGCGCTCGAGATGTGCAAAAACGTTATTTGTGTGAAGTCTGTAGTAAATGCTTTGCTCAGAGTGGTTCATTAGTAGCTCATATGCGTACACACACAGGCGTAAAACCATATGTTTGCAATATTTGCAGTAGAGGTTTTACTAAAAGCACCTATCTACAATTGCATCTTAGAACACACAGTGGAGAAAAACCATACATTTGTCAGTATTGCAGCAGAGCTTTTGCTAGAGCAAATACTTTGGCTAGACATATAACTATGCATACAGGAGAAGCTAAATACCAATGTCAAATTTGCTCCAAGTCCTTTAGACGACTAACTTCTTTGAATGAACATACTTACACTCATACAGGACAAAGACCTTATGCTTGTAAAATTTGTTCCAAAAGATATAATAATGCTGGATCTTTGTATGCACACACAAAAAAGTGTAAAGTTACACAAGCCAGTGGAGTACAGCAGAGCAATGACGAAACACCACCACAAACTGACATAGATGCTGCATCACaagttttgatttttacagAAAAGAAATCAGATGAAACTATAACTGACAAAACGATCGCAACTGAACCATCTTGTCAATTTATGGTCGCAAATGTGCCTGAGCAAAAAACAATGACAACAGATATGCTTGAACCATTTACAATTCAAGAGTCGCAGGTATATgaattaaattcaaaacaatttaaaacaCCTTATTATGGGTTGTATCCAAATATGTaa
- Protein Sequence
- MEEVNIYETSRTNHVAGDNALLGNQDANGTCRLCLGTCSSTDQRWALFAGDLPQKLMAFAAVQVQENDGLPRVICTNCRNLVYMSYNFKCQVEKCDQDLRHSLLMRHSTNHWPETITTIESMVPYAQKNIINSCMAIQNEENSTNTHEQFLFEIGNACDMNSSNSTFEPNILVAKNNTVSQGMSNLSLETHRCQEIQINFEAHYSMNEQSDKNNFIRTESQAVKENSNQSDDEKPLILRTKRHKCKYCIKSFANLSLLEKHAVIHKKTPETTYSCYLCDQQFPSVDKVQSHALSVHNLDMCKDKIMDYNKTQRNSDANNRKICDDSNSNESNSSFYNTEDNRIGQFYCKFCPRQFTYHKPFIDHIKTHPNYSDKLVKLVNNLNEIPDASSHILDEEGNSQSQSFENNVQENSNNINDFTDRNSTDLTDNDDNDLNEGDSSNDNDSNDDNIPESSIQCNQCGVLVATMRNLKRHLLTHTGFKYNCSICGKDFSRPDKLKEHQQLKHKEELFDSDDESVDDNSPTKSKKDKSNRPHKCSICPKAFAQAQSLANHEERHRRARDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNICSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICSKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKVTQASGVQQSNDETPPQTDIDAASQVLIFTEKKSDETITDKTIATEPSCQFMVANVPEQKTMTTDMLEPFTIQESQVYELNSKQFKTPYYGLYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036507;
- 90% Identity
- iTF_01035681; iTF_01487243;
- 80% Identity
- -